Mcm1Arg80 Ancestral Library

If you use these results in your work, please cite: Hanson-Smith and Johnson, PLoS Comp. Bio., 2016


Overview | Alignments | Sites | Trees | Ancestors | Mutations


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Select a Site:

Site 251 in Alignment 'msaprobs'


Similarity to Other Alignments

What percentage of the residues at this site are inferred to be a single site (i.e. homologous) in the alignments produced by other methods? A value of 100% indicates that the existence of site 251 is robust across multiple methods. Values less than 100% indicate that other alignment methods made different homology inferences.

Similarity of Site 251 in 'msaprobs'
to Sites in 'muscle'

What percentage of the residues at this site in msaprobs are inferred to be a single site (i.e. homologous) in the alignments produced by muscle? A value of 100% indicates that the existence of site 251 is reproduced using the muscle method. Values less than 100% indicate that muscle made different homology inferences for the residues at this site.


Species Residue at Site 251
in 'msaprobs'
muscle

The residue for every species at site 251 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

Tdel.paralog2 GKGAKQKVPV K YIANPARRHV Site 163
Clus.ancMcm1 QQKERRKIEI K FIQDKSRRHI Site 163
Tdel.paralog1 QPKERRKIEI K FIENKTRRHV Site 163
Kpol.paralog2 PNGKKRKLQL K YISNKSRRQV Site 163
Kpol.paralog1 QQKERRKIEI K FIENKTRRHV Site 163
Tpha.paralog1 GQKERRKIEI K FIENKTRRHV Site 163
Tpha.paralog2 HKTKNKKIKI D FIVNKTKRRL Site 163
Klac.ancMcm1 ETKERRKIEI K FIQDKTRRHI Site 163
Cgla.paralog1.duplicate GQRERRKIEI K FIENKTRRHV Site 163
Ncas.Paralog2 PDSMRQRIPI K YIENKTRRHV Site 163
Kthe.ancMcm1 QQKERRKIEI K FIQDKTRRHI Site 163
Scer.Paralog2 STVTRRKQPI R YIENKTRRHV Site 163
Kwal.ancMcm1 QQKERRKIEI K FIQDKTRRHI Site 163
Xafr.paralog1.duplicate IIKERKKIDI K YIENKTRRHV Site 163
Scer.Paralog1 QQKERRKIEI K FIENKTRRHV Site 163
Sbay.paralog1 QQKERRKIEI K FIENKTRRHV Site 163
Ncas.paralog1.duplicate DPKERRKIEI K FIENKTRRHV Site 163
Lklu.ancMcm1 QQKERRKIEI K FIQDKTRRHI Site 163
Calb.ancMcm1 TQKERRKIEI K FIQEKSRRHI Site 163
Ecym.ancMcm1 QQKERRKIEI K FIQDKTRRHI Site 163
Zrou.paralog2 SSQQKRKYPI K YIENRTRRHV Site 163
Zrou.paralog1 QQKERRKIEI K FIENKTRRHV Site 163
Xnag.paralog1 SQKERRKIEI K FIENKTRRHV Site 163
Tpha.paralog1.duplicate TAKERRKIEI K FIENKTRRHV Site 163
Xnag.paralog2 PRDVRRKVPI K YLENRTRRQV Site 163
Species Residue at Site 251
in 'msaprobs'
muscle

The residue for every species at site 251 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

Kpol.paralog1.duplicate STKERRKIEI K FIENKTRRHV Site 163
Sbay.Paralog2 TTTARQKQPI K YIENKTRRHV Site 163
Ylip.ancMcm1 LGRERRKIEI K FIQDKSRRHI Site 163
Cgla.paralog2 AVGKRRKAPL K YIENTTRRHV Site 163
Xbla.paralog1 GPKERRKIEI K FIENKTRRHV Site 163
Ndar.paralog1.duplicate STKERRKIEI K FIENKTRRHV Site 163
Ndar.paralog2 SSSSKQKIPI S FIENKSRRHV Site 163
Ndar.paralog1 STKERRKIEI K FIENKTRRHV Site 163
Cgla.paralog1 TPKDRRKIEI K FIENKTRRHV Site 163
Xbla.paralog1.duplicate AQRERRKIEI K FIENKTRRHV Site 163
Lelo.ancMcm1 TQKERRKIEI K FIQDKSRRHI Site 163
Xafr.paralog1 NGKERRKIEI K FIENKTRRHV Site 163
Xafr.paralog2 LKRARRKNPI K YIENKTRRQV Site 163
Ncas.paralog1 NQKERRKIEI K FIENKTRRHV Site 163
ABR.ancMcm1 QQKERRKIEI K FIQDKTRRHI Site 163

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