Mcm1Arg80 Ancestral Library

If you use these results in your work, please cite: Hanson-Smith and Johnson, PLoS Comp. Bio., 2016


Overview | Alignments | Sites | Trees | Ancestors | Mutations


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Select a Site:

Site 229 in Alignment 'msaprobs'


Similarity to Other Alignments

What percentage of the residues at this site are inferred to be a single site (i.e. homologous) in the alignments produced by other methods? A value of 100% indicates that the existence of site 229 is robust across multiple methods. Values less than 100% indicate that other alignment methods made different homology inferences.

Similarity of Site 229 in 'msaprobs'
to Sites in 'muscle'

What percentage of the residues at this site in msaprobs are inferred to be a single site (i.e. homologous) in the alignments produced by muscle? A value of 100% indicates that the existence of site 229 is reproduced using the muscle method. Values less than 100% indicate that muscle made different homology inferences for the residues at this site.


Species Residue at Site 229
in 'msaprobs'
muscle

The residue for every species at site 229 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

Tdel.paralog2 TMDQS-NS-- - ATPV----SI  
Clus.ancMcm1 ---DE--D-- - DEPS----GG  
Tdel.paralog1 -------T-- - -G-S----RT  
Kpol.paralog2 LENGARPYPT Y IDDP----ED Site 126
Kpol.paralog1 -------S-- - TGNG----SG  
Tpha.paralog1 HLEDD--E-- - DATG----KK  
Tpha.paralog2 ---------- - ----------  
Klac.ancMcm1 ---------- - ---S----VT  
Cgla.paralog1.duplicate ---------- - ---T----PT  
Ncas.Paralog2 ---NT--P-- - TGDASDQLGG  
Kthe.ancMcm1 ---EL--S-- - AGPQ----PQ  
Scer.Paralog2 ---IT--K-- - TKDS----SD  
Kwal.ancMcm1 ---EL--S-- - VGAQ----SQ  
Xafr.paralog1.duplicate -------N-- - TSQD----KV  
Scer.Paralog1 ---------- - --PT----NN  
Sbay.paralog1 ---------- - --PT----NN  
Ncas.paralog1.duplicate NNQEA--E-- - SSST----ST  
Lklu.ancMcm1 ---P---G-- - AGTS----QQ  
Calb.ancMcm1 ---DD--D-- - DGTS----QG  
Ecym.ancMcm1 ---------- - ---Q----DQ  
Zrou.paralog2 DTQEPDDD-- - EDEE----ER  
Zrou.paralog1 -------N-- - --SS----RA  
Xnag.paralog1 VGGDPDTPTG S GSGG----NG Site 126
Tpha.paralog1.duplicate DSKDSSLL-- - SPSS----TG  
Xnag.paralog2 EE-DD--H-- - DLDL----ME  
Species Residue at Site 229
in 'msaprobs'
muscle

The residue for every species at site 229 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

Kpol.paralog1.duplicate ---EN--T-- - TVNS----ND  
Sbay.Paralog2 ---NT--S-- - TILT----TT  
Ylip.ancMcm1 DV-GS--D-- - DDDA----GG  
Cgla.paralog2 ---ED--E-- - EVST----PS  
Xbla.paralog1 NSVDT--P-- - GSGS----AT  
Ndar.paralog1.duplicate -------G-- - --SQ----QS  
Ndar.paralog2 ---RT--P-- - SVPE----SP  
Ndar.paralog1 ---------- - -TPI----EE  
Cgla.paralog1 --SNN--G-- - TSFE----NT  
Xbla.paralog1.duplicate TLTNN-PS-- - AASA----AL  
Lelo.ancMcm1 --DDD--E-- S GAAS----SG Site 126
Xafr.paralog1 HIEED--P-- - SLSP----ST  
Xafr.paralog2 ---SV--E-- - EEEE----DY  
Ncas.paralog1 --DDS--I-- - VADS----PA  
ABR.ancMcm1 ---------- - ---A----EQ  

Generated by PhyloBot at 14:02, November 29th 2020
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