Mcm1Arg80 Ancestral Library

If you use these results in your work, please cite: Hanson-Smith and Johnson, PLoS Comp. Bio., 2016


Overview | Alignments | Sites | Trees | Ancestors | Mutations


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Site 214 in Alignment 'msaprobs'


Similarity to Other Alignments

What percentage of the residues at this site are inferred to be a single site (i.e. homologous) in the alignments produced by other methods? A value of 100% indicates that the existence of site 214 is robust across multiple methods. Values less than 100% indicate that other alignment methods made different homology inferences.

Similarity of Site 214 in 'msaprobs'
to Sites in 'muscle'

What percentage of the residues at this site in msaprobs are inferred to be a single site (i.e. homologous) in the alignments produced by muscle? A value of 100% indicates that the existence of site 214 is reproduced using the muscle method. Values less than 100% indicate that muscle made different homology inferences for the residues at this site.


Species Residue at Site 214
in 'msaprobs'
muscle

The residue for every species at site 214 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

Tdel.paralog2 MGHNEMMRAQ D EDPSTMDQS- Site 110
Clus.ancMcm1 ---------- - -------DE-  
Tdel.paralog1 ---------- - ----------  
Kpol.paralog2 ---------- - --AHLENGAR  
Kpol.paralog1 ---------- - ----------  
Tpha.paralog1 ---IVADSAI D DDASHLEDD- Site 106
Tpha.paralog2 ---------- - ----------  
Klac.ancMcm1 ---------- - ----------  
Cgla.paralog1.duplicate ---------- - ----------  
Ncas.Paralog2 ---------- - -------NT-  
Kthe.ancMcm1 ---------- - -------EL-  
Scer.Paralog2 ---------- - -------IT-  
Kwal.ancMcm1 ---------- - -------EL-  
Xafr.paralog1.duplicate ---------- - ----------  
Scer.Paralog1 ---------- - ----------  
Sbay.paralog1 ---------- - ----------  
Ncas.paralog1.duplicate --------VQ D QIIINNQEA- Site 111
Lklu.ancMcm1 ---------- - -------P--  
Calb.ancMcm1 ---------- - -------DD-  
Ecym.ancMcm1 ---------- - ----------  
Zrou.paralog2 ---------- - -ASVDTQEPD  
Zrou.paralog1 ---------- - ----------  
Xnag.paralog1 ---PTLSPAN S AGNNVGGDPD Site 107
Tpha.paralog1.duplicate ---------- - -LKTDSKDSS  
Xnag.paralog2 DEDEDDDAQE D EDLDEE-DD- Site 128
Species Residue at Site 214
in 'msaprobs'
muscle

The residue for every species at site 214 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

Kpol.paralog1.duplicate ---------- - -------EN-  
Sbay.Paralog2 ---------- - -------NT-  
Ylip.ancMcm1 SDNVLKRESS Q GGPGDV-GS- Site 113
Cgla.paralog2 ---------- - -------ED-  
Xbla.paralog1 GNQDVVATAG N STAGNSVDT- Site 128
Ndar.paralog1.duplicate ---------- - ----------  
Ndar.paralog2 ---------- - -------RT-  
Ndar.paralog1 ---------- - ----------  
Cgla.paralog1 ---------- - ------SNN-  
Xbla.paralog1.duplicate GTPNSSTNTD P NSSTTLTNN- Site 111
Lelo.ancMcm1 ---------- - ------DDD-  
Xafr.paralog1 ---------- - -QTSHIEED-  
Xafr.paralog2 ---------- - -------SV-  
Ncas.paralog1 ---------- - ------DDS-  
ABR.ancMcm1 ---------- - ----------  

Generated by PhyloBot at 13:36, November 29th 2020
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