Mcm1Arg80 Ancestral Library

If you use these results in your work, please cite: Hanson-Smith and Johnson, PLoS Comp. Bio., 2016


Overview | Alignments | Sites | Trees | Ancestors | Mutations


Select an Alignment:

Select a Site:

Site 144 in Alignment 'msaprobs'


Similarity to Other Alignments

What percentage of the residues at this site are inferred to be a single site (i.e. homologous) in the alignments produced by other methods? A value of 100% indicates that the existence of site 144 is robust across multiple methods. Values less than 100% indicate that other alignment methods made different homology inferences.

Similarity of Site 144 in 'msaprobs'
to Sites in 'muscle'

What percentage of the residues at this site in msaprobs are inferred to be a single site (i.e. homologous) in the alignments produced by muscle? A value of 100% indicates that the existence of site 144 is reproduced using the muscle method. Values less than 100% indicate that muscle made different homology inferences for the residues at this site.


Species Residue at Site 144
in 'msaprobs'
muscle

The residue for every species at site 144 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

Tdel.paralog2 ---------- - ---------M  
Clus.ancMcm1 ---------- - --------DD  
Tdel.paralog1 ---------- - ---------E  
Kpol.paralog2 ---------- - ---------E  
Kpol.paralog1 ---------- - ---------D  
Tpha.paralog1 ---------- - ---------G  
Tpha.paralog2 ---------- - ----------  
Klac.ancMcm1 ---------- - ---------D  
Cgla.paralog1.duplicate ---------- - ---------T  
Ncas.Paralog2 EEEEGDEEED L ELEEETTPSL Site 127
Kthe.ancMcm1 ---------- - ---------D  
Scer.Paralog2 DD------DD K FSVSTSTPTP Site 119
Kwal.ancMcm1 ---------- - ---------E  
Xafr.paralog1.duplicate ---------- - ---------N  
Scer.Paralog1 ---------- - ---------T  
Sbay.paralog1 ---------- - ---------T  
Ncas.paralog1.duplicate ---------- - ----------  
Lklu.ancMcm1 ---------- - ---------E  
Calb.ancMcm1 ---------- - --------DD  
Ecym.ancMcm1 ---------- - ----------  
Zrou.paralog2 ---------- - ----------  
Zrou.paralog1 ---------- - ---------E  
Xnag.paralog1 ---------- - ---------E  
Tpha.paralog1.duplicate ---------- - ---------K  
Xnag.paralog2 ---------- - ---------D  
Species Residue at Site 144
in 'msaprobs'
muscle

The residue for every species at site 144 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

Kpol.paralog1.duplicate ---------- - ---------G  
Sbay.Paralog2 DDEDKSSVEP S TPTPTTTKTK Site 124
Ylip.ancMcm1 ---------- - ---------D  
Cgla.paralog2 GNGNEHEIEN E QENENENEND Site 108
Xbla.paralog1 ---------- - ---------T  
Ndar.paralog1.duplicate ---------- - ---------P  
Ndar.paralog2 SYRESSASVP A TSVDKVTLTN Site 131
Ndar.paralog1 ---------- - ----------  
Cgla.paralog1 ---------- - --------EP  
Xbla.paralog1.duplicate ---------- - ---------T  
Lelo.ancMcm1 ---------- - --------DD  
Xafr.paralog1 ---------- - ---------E  
Xafr.paralog2 NVNKDSLVEG T NNETSIPSPE Site 119
Ncas.paralog1 ---------- - ---------E  
ABR.ancMcm1 ---------- - ----------  

Generated by PhyloBot at 04:58, November 30th 2020
Questions/Comments? help@phylobot.com