Mcm1Arg80 Ancestral Library

If you use these results in your work, please cite: Hanson-Smith and Johnson, PLoS Comp. Bio., 2016


Overview | Alignments | Sites | Trees | Ancestors | Mutations


Select an Alignment:

Select a Site:

Site 12 in Alignment 'msaprobs'


Similarity to Other Alignments

What percentage of the residues at this site are inferred to be a single site (i.e. homologous) in the alignments produced by other methods? A value of 100% indicates that the existence of site 12 is robust across multiple methods. Values less than 100% indicate that other alignment methods made different homology inferences.

Similarity of Site 12 in 'msaprobs'
to Sites in 'muscle'

What percentage of the residues at this site in msaprobs are inferred to be a single site (i.e. homologous) in the alignments produced by muscle? A value of 100% indicates that the existence of site 12 is reproduced using the muscle method. Values less than 100% indicate that muscle made different homology inferences for the residues at this site.


Species Residue at Site 12
in 'msaprobs'
muscle

The residue for every species at site 12 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

Tdel.paralog2 CKG------- - ----------  
Clus.ancMcm1 SEV------- - ----------  
Tdel.paralog1 SDI------- - ----------  
Kpol.paralog2 VKV------- - ----------  
Kpol.paralog1 SDV------- - ----------  
Tpha.paralog1 EEP------- - ----------  
Tpha.paralog2 TD-------- - ----------  
Klac.ancMcm1 SDS------- - ----------  
Cgla.paralog1.duplicate SDI------- - ----------  
Ncas.Paralog2 EIN------- - ----------  
Kthe.ancMcm1 SDT------- - ----------  
Scer.Paralog2 TSN------- - ----------  
Kwal.ancMcm1 SDT------- - ----------  
Xafr.paralog1.duplicate SDK------- - ----------  
Scer.Paralog1 SDI------- - ----------  
Sbay.paralog1 SDI------- - ----------  
Ncas.paralog1.duplicate SDT------- - ----------  
Lklu.ancMcm1 SNT------- - ----------  
Calb.ancMcm1 AIK------- - ----------  
Ecym.ancMcm1 SDT------- - ----------  
Zrou.paralog2 DEE------- - ----------  
Zrou.paralog1 SDI------- - ----------  
Xnag.paralog1 SDQ------- - ----------  
Tpha.paralog1.duplicate SDS------- - ----------  
Xnag.paralog2 KGA------- - ----------  
Species Residue at Site 12
in 'msaprobs'
muscle

The residue for every species at site 12 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

Kpol.paralog1.duplicate GDS------- - ----------  
Sbay.Paralog2 AWN------- - ----------  
Ylip.ancMcm1 SDE------- - ----------  
Cgla.paralog2 NSQ------- - ----------  
Xbla.paralog1 SDI------- - ----------  
Ndar.paralog1.duplicate SDV------- - ----------  
Ndar.paralog2 VVKKRGLNED E RNDNEYDQSK Site 12
Ndar.paralog1 SDT------- - ----------  
Cgla.paralog1 SDK------- - ----------  
Xbla.paralog1.duplicate SDI------- - ----------  
Lelo.ancMcm1 SLK------- - ----------  
Xafr.paralog1 SDQ------- - ----------  
Xafr.paralog2 HIR------- - ----------  
Ncas.paralog1 SEE------- - ----------  
ABR.ancMcm1 SDA------- - ----------  

Generated by PhyloBot at 14:27, November 29th 2020
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