Mcm1Arg80 Ancestral Library

If you use these results in your work, please cite: Hanson-Smith and Johnson, PLoS Comp. Bio., 2016


Overview | Alignments | Sites | Trees | Ancestors | Mutations


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Select a Site:

Site 115 in Alignment 'msaprobs'


Similarity to Other Alignments

What percentage of the residues at this site are inferred to be a single site (i.e. homologous) in the alignments produced by other methods? A value of 100% indicates that the existence of site 115 is robust across multiple methods. Values less than 100% indicate that other alignment methods made different homology inferences.

Similarity of Site 115 in 'msaprobs'
to Sites in 'muscle'

What percentage of the residues at this site in msaprobs are inferred to be a single site (i.e. homologous) in the alignments produced by muscle? A value of 100% indicates that the existence of site 115 is reproduced using the muscle method. Values less than 100% indicate that muscle made different homology inferences for the residues at this site.


Species Residue at Site 115
in 'msaprobs'
muscle

The residue for every species at site 115 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

Tdel.paralog2 ---------- - ----------  
Clus.ancMcm1 DVMGAPGAQF S RGSVSGVG-- Site 108
Tdel.paralog1 ---------- - ----------  
Kpol.paralog2 ---------- - ----------  
Kpol.paralog1 ---------- - ----------  
Tpha.paralog1 ---------- - ----------  
Tpha.paralog2 ---------- - ----------  
Klac.ancMcm1 ---------- - ----------  
Cgla.paralog1.duplicate ---------- - ----------  
Ncas.Paralog2 GEDEDDEEEE D TLNLNREELA Site 79
Kthe.ancMcm1 ---------- - ----------  
Scer.Paralog2 VETNEPTKPI R RLSTPSPEQD Site 81
Kwal.ancMcm1 ---------- - ----------  
Xafr.paralog1.duplicate ---------- - ----------  
Scer.Paralog1 ---------- - ----------  
Sbay.paralog1 ---------- - ----------  
Ncas.paralog1.duplicate ---------- - ----------  
Lklu.ancMcm1 ---------- - ----------  
Calb.ancMcm1 NNNSNNSNSN N NADVSAPV-- Site 107
Ecym.ancMcm1 ---------- - ----------  
Zrou.paralog2 ---------- - ----------  
Zrou.paralog1 ---------- - ----------  
Xnag.paralog1 ---------- - ----------  
Tpha.paralog1.duplicate ---------- - ----------  
Xnag.paralog2 ---------- - ----------  
Species Residue at Site 115
in 'msaprobs'
muscle

The residue for every species at site 115 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

Kpol.paralog1.duplicate ---------- - ----------  
Sbay.Paralog2 NIAAIDSNGS V RRPPSQLMQD Site 76
Ylip.ancMcm1 ---------- - ----------  
Cgla.paralog2 MPAHMPGQRP T VGGGDEVRGT Site 79
Xbla.paralog1 ---------- - ----------  
Ndar.paralog1.duplicate ---------- - ----------  
Ndar.paralog2 GLDEGEGGGK E EDEEEEDEDE Site 102
Ndar.paralog1 ---------- - ----------  
Cgla.paralog1 DGSMTGSVSG S NSVLNEMS-- Site 105
Xbla.paralog1.duplicate ---------- - ----------  
Lelo.ancMcm1 YENSANGNPI S SSLSNPPM-- Site 106
Xafr.paralog1 ---------- - ----------  
Xafr.paralog2 GDLEEENTKE P RRPPRGPSMN Site 75
Ncas.paralog1 ---------- - ----------  
ABR.ancMcm1 ---------- - ----------  

Generated by PhyloBot at 13:31, November 29th 2020
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