Mcm1Arg80 Ancestral Library

If you use these results in your work, please cite: Hanson-Smith and Johnson, PLoS Comp. Bio., 2016


Overview | Alignments | Sites | Trees | Ancestors | Mutations


Select an Alignment:

Select a Site:

Site 105 in Alignment 'msaprobs'


Similarity to Other Alignments

What percentage of the residues at this site are inferred to be a single site (i.e. homologous) in the alignments produced by other methods? A value of 100% indicates that the existence of site 105 is robust across multiple methods. Values less than 100% indicate that other alignment methods made different homology inferences.

Similarity of Site 105 in 'msaprobs'
to Sites in 'muscle'

What percentage of the residues at this site in msaprobs are inferred to be a single site (i.e. homologous) in the alignments produced by muscle? A value of 100% indicates that the existence of site 105 is reproduced using the muscle method. Values less than 100% indicate that muscle made different homology inferences for the residues at this site.


Species Residue at Site 105
in 'msaprobs'
muscle

The residue for every species at site 105 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

Tdel.paralog2 ---------- - ----------  
Clus.ancMcm1 ---AKLESNE D VMGAPGAQFS Site 83
Tdel.paralog1 ---------- - ----------  
Kpol.paralog2 ---------- - ----------  
Kpol.paralog1 ---------- - ----------  
Tpha.paralog1 ---------- - ----------  
Tpha.paralog2 ---------- - ----------  
Klac.ancMcm1 ---------- - ----------  
Cgla.paralog1.duplicate ---------- - ----------  
Ncas.Paralog2 VSDDEGDLEC G EDEDDEEEED Site 69
Kthe.ancMcm1 ---------- - ----------  
Scer.Paralog2 SPVEKPITGD V ETNEPTKPIR Site 71
Kwal.ancMcm1 ---------- - ----------  
Xafr.paralog1.duplicate ---------- - ----------  
Scer.Paralog1 ---------- - ----------  
Sbay.paralog1 ---------- - ----------  
Ncas.paralog1.duplicate ---------- - ----------  
Lklu.ancMcm1 ---------- - ----------  
Calb.ancMcm1 ---NSHSTNN N NNSNNSNSNN Site 82
Ecym.ancMcm1 ---------- - ----------  
Zrou.paralog2 ---------- - ----------  
Zrou.paralog1 ---------- - ----------  
Xnag.paralog1 ---------- - ----------  
Tpha.paralog1.duplicate ---------- - ----------  
Xnag.paralog2 ---------- - ----------  
Species Residue at Site 105
in 'msaprobs'
muscle

The residue for every species at site 105 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

Kpol.paralog1.duplicate ---------- - ----------  
Sbay.Paralog2 IRVLEEPTVG N IAAIDSNGSV Site 66
Ylip.ancMcm1 ---------- - ----------  
Cgla.paralog2 QDQRPQRQVQ M PAHMPGQRPT Site 69
Xbla.paralog1 ---------- - ----------  
Ndar.paralog1.duplicate ---------- - ----------  
Ndar.paralog2 NKEELSGNLG G LDEGEGGGKE Site 92
Ndar.paralog1 ---------- - ----------  
Cgla.paralog1 MEDKVDDIDD D GSMTGSVSGS Site 80
Xbla.paralog1.duplicate ---------- - ----------  
Lelo.ancMcm1 -----EDGPE Y ENSANGNPIS Site 81
Xafr.paralog1 ---------- - ----------  
Xafr.paralog2 DMRNHSDFVA G DLEEENTKEP Site 65
Ncas.paralog1 ---------- - ----------  
ABR.ancMcm1 ---------- - ----------  

Generated by PhyloBot at 14:18, November 29th 2020
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