V-ATPase Ancestral Library

If you use these results in your work, please cite: Hanson-Smith and Johnson, PLoS Comp. Bio., 2016


Overview | Alignments | Sites | Trees | Ancestors | Mutations


Select an Alignment:

Select a Site:

Site 98 in Alignment 'muscle'


Similarity to Other Alignments

What percentage of the residues at this site are inferred to be a single site (i.e. homologous) in the alignments produced by other methods? A value of 100% indicates that the existence of site 98 is robust across multiple methods. Values less than 100% indicate that other alignment methods made different homology inferences.

Similarity of Site 98 in 'muscle'
to Sites in 'msaprobs'

What percentage of the residues at this site in muscle are inferred to be a single site (i.e. homologous) in the alignments produced by msaprobs? A value of 100% indicates that the existence of site 98 is reproduced using the msaprobs method. Values less than 100% indicate that msaprobs made different homology inferences for the residues at this site.


Species Residue at Site 98
in 'muscle'
msaprobs

The residue for every species at site 98 of the muscle alignment can be found in the msaprobs alignment, but with a possibly different site number.

M_musculus_16 TSPFM----W S NLGIGLAI-- Site 139
O_mordax_3 -SPFF----- A VMGASAAM-- Site 139
D_rerio_3 -SPFF----- A VMGASSAM-- Site 139
M_grisea_16 ISPFA----W A SLGIALCI-- Site 139
M_grisea_11 -APFV----- G MAGIAAAM-- Site 139
A_niger_3 -APFF----- G ALGCTSAI-- Site 139
C_glabrata_3 -APFF----- G AIGCAAAI-- Site 139
A_terreus_11 -APFF---SF M IFGCTYFF-- Site 141
A_terreus_16 VSPYA----W A NLGIAMCI-- Site 139
C_parvum_16 IPPLH----F A YLGVVLCI-- Site 139
T_adhaerens_3 -TPFF----- G VMGATAAM-- Site 139
T_castaneum_3 -GPFF----- G VMGAAAAI-- Site 139
X_tropicalis_3 -SAFF----- A VMGASSAM-- Site 139
G_zeae_3 -SPFF----- G AMGCTCAI-- Site 139
L_elongisporus_3 -APFF----- G SIGCAAAI-- Site 139
A_fumigatus_3 -APFF----- G ALGCTSAI-- Site 139
M_grisea_3 -APFF----- G AMGCTAAI-- Site 139
S_pombe_3 -APFF----- G VMGCTAAI-- Site 139
C_albicans_3 -APFL----- G FAGCAAAM-- Site 139
B_bovis_16 IPPSF----W G YLGTFLAL-- Site 139
C_muris_3 -SLFF----- G FMGIAGCV-- Site 139
S_purpuratus_3 -TPFF----- G VMGATSAM-- Site 139
C_immitis_16 VSPYA----W A NIGIGLCV-- Site 139
M_mulatta_16 TSPFM----W S NLGIGLAI-- Site 139
Y_lipolytica_3 -APFF----- G AIGCTAAI-- Site 139
Species Residue at Site 98
in 'muscle'
msaprobs

The residue for every species at site 98 of the muscle alignment can be found in the msaprobs alignment, but with a possibly different site number.

B_fuckeliana_16 LE-------W S ESN------- Site 139
C_immitis_11 -APFF----- G MAGIASAVND Site 139
A_mellifera_16 TSPYM----W A TLGIGLAV-- Site 139
A_gossypii_11 -APFF----- G FAGCAAAM-- Site 139
T_annulata_16 LSPSF----W G YLGIFFSL-- Site 139
N_vectensis_3 -VAFF----- G VMGATAAM-- Site 139
S_Salar_16 TSPFM----W A NLGIGLAI-- Site 139
L_elongisporus_16 TSPYM----W A SLGIASCI-- Site 139
C_neoformans_16 SSPYA----W A LVGVGLCI-- Site 139
C_neoformans_11 -GSILRLTDN S FAGVTSAI-- Site 139
P_knowlesi_16 ISPYN----W A MLGIAMAL-- Site 139
A_terreus_3 RGPFF----- G ALGCTSAI-- Site 139
A_pisum_3 -GPFF----- G VMGAASAI-- Site 139
S_Salar_3 -SPFF----- A VMGASAAM-- Site 139
P_marneffei_3 -APFF----- G ALGCTSAI-- Site 139
P_stipitis_3 -APFF----- G AIGCAASI-- Site 139
A_fumigatus_11 -APFF----- S FL---RIL-- Site 139
A_gossypii_3 -APFF----- G AIGCAAAI-- Site 139
C_hominis_3 TATLF----- G MLGSTLAT-- Site 139
C_muris_16 ISPFH----F A YFGVAMCL-- Site 139
X_laevis_16 TSPYM----W A NLGIGLAI-- Site 139
M_mulatta_3 -ASFF----- A VMGASAAM-- Site 139
M_brevicollis_16 TSPYM----W A ALGIAISI-- Site 139
K_lactis_3 -APFF----- G AIGCAAAI-- Site 139
T_castaneum_16 TSPYM----W C TIGIGLAV-- Site 139
Species Residue at Site 98
in 'muscle'
msaprobs

The residue for every species at site 98 of the muscle alignment can be found in the msaprobs alignment, but with a possibly different site number.

C_intestinalis_16 ISPYA----F A TTGIGLAM-- Site 139
E_caballus_3 -ASFF----- A VMGASAAM-- Site 139
C_globosum_3 ----M----- - --GCTAAI--  
A_clavatus_3 -APFF----- G ALGCTSAI-- Site 139
N_crassa_11 -APFI----- G MAGIAAAM-- Site 139
N_crassa_16 VSPYA----W A DLGIALCI-- Site 139
X_tropicalis_16 TSPYM----W A NLGIGLSI-- Site 139
P_anserina_11 -APFF----- G MAGIAAAM-- Site 139
P_vivax_16 ISPYN----W A MLGIAMAL-- Site 139
P_anserina_16 VSPYA----W A DTGIALCI-- Site 139
H_sapiens_16 TSPFM----W S NLGIGLAI-- Site 139
T_annulata_3 -SIFF----- G MMGVVCAM-- Site 139
C_intestinalis_3 -AAFF----- S SMGAASAM-- Site 139
L_elongisporus_11 -APWL----- G FAGCAAAM-- Site 139
A_gossypii_16 TSPYM----W A NLGISLCI-- Site 139
A_pisum_16 TSPYM----W A VLGISLAV-- Site 139
N_crassa_3 -APFF----- G AMGCTAAI-- Site 139
V_polyspora_3 -APFF----- G AIGCAASI-- Site 139
S_cerevisiae_3 -APFF----- G AIGCASAI-- Site 139
P_marneffei_16 VSPYT----W A NIGIAMCI-- Site 139
D_hansenii_3 -APFF----- G SMGCAAAI-- Site 139
S_pombe_11 -SSFF----- G FAGVCASM-- Site 139
T_guttata_3 -ASFF----- A VMGASAAM-- Site 139
S_pombe_16 TSPYT----W G LLGIASCV-- Site 139
B_fuckeliana_3 ----M----- - --GCTSAI--  
Species Residue at Site 98
in 'muscle'
msaprobs

The residue for every species at site 98 of the muscle alignment can be found in the msaprobs alignment, but with a possibly different site number.

T_adhaerens_16 TSPFM----W A DLGIGLAI-- Site 139
S_cerevisiae_16 TSPYM----W A NLGIALCV-- Site 139
R_norvegicus_3 -SSFF----- G VMGASSAM-- Site 139
S_cerevisiae_11 -APFF----- G FAGCAAAM-- Site 139
B_taurus_3 -ASFF----- A VMGASAAM-- Site 139
C_familiaris_3 -ASFF----- A VMGASAAM-- Site 139
P_anserina_3 -APFF----- G AMGCTAAI-- Site 139
P_marneffei_11 -APFF----- S FAGVAAAM-- Site 139
P_knowlesi_3 -SAFF----- G FMGIAASS-- Site 139
T_guttata_16 TSPYM----W C NLGIGLAI-- Site 139
B_fuckeliana_11 -APFF----- G MAGIAFAM-- Site 139
C_cinerea_okayama_3 -APFF----- S AMGCTAAI-- Site 139
P_falciparum_16 ISPYN----W A MLGIALSL-- Site 139
N_vectensis_16 SSPYM----W A CLGIAIAI-- Site 139
A_niger_11 -APFF----- S FAGIAAAM-- Site 139
A_niger_16 VSPYA----W A NFGIAMCI-- Site 139
C_parvum_3 -SLFF----- G FLGIAGCL-- Site 139
S_purpuratus_16 IPPYM----W A DIGVGLSI-- Site 139
B_floridae_3 -VHFF----- G VMGATSAI-- Site 139
Y_lipolytica_16 TSPLM----W A NLGIGMCI-- Site 139
A_mellifera_3 -APFF----- G VMGAASAI-- Site 139
A_clavatus_16 VSPYA----W A NLGIAMCI-- Site 139
A_clavatus_11 -APFF----- S FAGIASAM-- Site 139
S_sclerotiorum_3 -APFF----- G AMGCTAAI-- Site 139
P_falciparum_3 -SAFF----- G FMGIAASS-- Site 139
Species Residue at Site 98
in 'muscle'
msaprobs

The residue for every species at site 98 of the muscle alignment can be found in the msaprobs alignment, but with a possibly different site number.

D_discoideum_16 ISPST----W A ALGIGLSL-- Site 139
C_cinerea_okayama_11 ---------- - -------M--  
D_hansenii_16 TSPYM----W A NLGIASCI-- Site 139
D_hansenii_11 -APFL----- G FAGCAAAM-- Site 139
C_cinerea_okayama_16 ISPYA----W G ATGIGLCI-- Site 139
P_vivax_3 -SAFF----- G FMGIAASS-- Site 139
C_immitis_3 -APFF----- G ALGCSSAI-- Site 139
G_zeae_11 -APFI----- G MAGIAAAM-- Site 139
C_neoformans_3 -APFF----- G AMGCTSAI-- Site 139
H_sapiens_3 -ASFF----- A VMGASAAM-- Site 139
G_zeae_16 VSPYT----W A TLGIAFCI-- Site 139
Y_lipolytica_11 -APFF----- G FAGCCAAM-- Site 139
M_brevicollis_3 -SSFF----- G VMGASAAM-- Site 139
D_discoideum_3 -APFF----- G AMGVTAAL-- Site 139
P_stipitis_16 TSPYM----W A CLGIASCI-- Site 139
C_albicans_16 TSPYM----W A SLGIGSCI-- Site 139
C_albicans_11 -APFL----- G FAGCAAAM-- Site 139
P_stipitis_11 -APFL----- G FAGCAAAM-- Site 139
X_laevis_3 -SAFF----- A VMGASSAM-- Site 139
C_glabrata_11 -APFF----- G FAGCALAM-- Site 139
E_caballus_16 TSPFM----W S NLGIGLAI-- Site 139
C_glabrata_16 TSPYM----W A NLGIASCI-- Site 139
V_polyspora_11 -APFF----- G FAGCAFAM-- Site 139
V_polyspora_16 TSPYM----W A SLGISLCI-- Site 139
C_hominis_16 IPPLH----F A YLGVVLCI-- Site 139
Species Residue at Site 98
in 'muscle'
msaprobs

The residue for every species at site 98 of the muscle alignment can be found in the msaprobs alignment, but with a possibly different site number.

C_globosum_11 -APFI----- G MGGIAAAM-- Site 139
C_globosum_16 VSPYA----W A DLGIALCI-- Site 139
O_mordax_16 TSPFM----W A NLGIGLAI-- Site 139
D_rerio_16 TSPFM----W A NLGIGLAI-- Site 139
B_bovis_3 -SIFF----- G LMGAVSSM-- Site 139
B_floridae_16 TSPYM----W A NLGVGLTI-- Site 139
M_musculus_3 -SSFF----- G VMGASSAM-- Site 139
A_fumigatus_16 VSPYA----W A NIGIALCI-- Site 139
C_familiaris_16 TSPFM----W S NLGIGLAI-- Site 139
K_lactis_11 -APFF----- G FAGCAFAM-- Site 139
K_lactis_16 TSPYM----W A NLGIALCI-- Site 139
B_taurus_16 TSPFM----W S NLGIGLAI-- Site 139
S_sclerotiorum_16 ISPYA----W A DMGIGMCI-- Site 139
S_sclerotiorum_11 -APFF----- - --GMLQGI--  
R_norvegicus_16 TSPFM----W S NLGIGLAI-- Site 139

Generated by PhyloBot at 14:17, November 29th 2020
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