V-ATPase Ancestral Library

If you use these results in your work, please cite: Hanson-Smith and Johnson, PLoS Comp. Bio., 2016


Overview | Alignments | Sites | Trees | Ancestors | Mutations


Select an Alignment:

Select a Site:

Site 96 in Alignment 'muscle'


Similarity to Other Alignments

What percentage of the residues at this site are inferred to be a single site (i.e. homologous) in the alignments produced by other methods? A value of 100% indicates that the existence of site 96 is robust across multiple methods. Values less than 100% indicate that other alignment methods made different homology inferences.

Similarity of Site 96 in 'muscle'
to Sites in 'msaprobs'

What percentage of the residues at this site in muscle are inferred to be a single site (i.e. homologous) in the alignments produced by msaprobs? A value of 100% indicates that the existence of site 96 is reproduced using the msaprobs method. Values less than 100% indicate that msaprobs made different homology inferences for the residues at this site.


Species Residue at Site 96
in 'muscle'
msaprobs

The residue for every species at site 96 of the muscle alignment can be found in the msaprobs alignment, but with a possibly different site number.

M_musculus_16 TETSPFM--- - WSNLGIGLAI  
O_mordax_3 ---SPFF--- - -AVMGASAAM  
D_rerio_3 ---SPFF--- - -AVMGASSAM  
M_grisea_16 EEISPFA--- - WASLGIALCI  
M_grisea_11 ---APFV--- - -GMAGIAAAM  
A_niger_3 ---APFF--- - -GALGCTSAI  
C_glabrata_3 ---APFF--- - -GAIGCAAAI  
A_terreus_11 ---APFF--- S FMIFGCTYFF Site 139
A_terreus_16 ESVSPYA--- - WANLGIAMCI  
C_parvum_16 LSIPPLH--- - FAYLGVVLCI  
T_adhaerens_3 ---TPFF--- - -GVMGATAAM  
T_castaneum_3 ---GPFF--- - -GVMGAAAAI  
X_tropicalis_3 ---SAFF--- - -AVMGASSAM  
G_zeae_3 ---SPFF--- - -GAMGCTCAI  
L_elongisporus_3 ---APFF--- - -GSIGCAAAI  
A_fumigatus_3 ---APFF--- - -GALGCTSAI  
M_grisea_3 ---APFF--- - -GAMGCTAAI  
S_pombe_3 ---APFF--- - -GVMGCTAAI  
C_albicans_3 ---APFL--- - -GFAGCAAAM  
B_bovis_16 ANIPPSF--- - WGYLGTFLAL  
C_muris_3 ---SLFF--- - -GFMGIAGCV  
S_purpuratus_3 ---TPFF--- - -GVMGATSAM  
C_immitis_16 EAVSPYA--- - WANIGIGLCV  
M_mulatta_16 TETSPFM--- - WSNLGIGLAI  
Y_lipolytica_3 ---APFF--- - -GAIGCTAAI  
Species Residue at Site 96
in 'muscle'
msaprobs

The residue for every species at site 96 of the muscle alignment can be found in the msaprobs alignment, but with a possibly different site number.

B_fuckeliana_16 RDLE------ - WSESN-----  
C_immitis_11 ---APFF--- - -GMAGIASAV  
A_mellifera_16 ENTSPYM--- - WATLGIGLAV  
A_gossypii_11 ---APFF--- - -GFAGCAAAM  
T_annulata_16 KDLSPSF--- - WGYLGIFFSL  
N_vectensis_3 ---VAFF--- - -GVMGATAAM  
S_Salar_16 TETSPFM--- - WANLGIGLAI  
L_elongisporus_16 ESTSPYM--- - WASLGIASCI  
C_neoformans_16 AESSPYA--- - WALVGVGLCI  
C_neoformans_11 ---GSILRLT D NSFAGVTSAI Site 137
P_knowlesi_16 RSISPYN--- - WAMLGIAMAL  
A_terreus_3 LPRGPFF--- - -GALGCTSAI  
A_pisum_3 ---GPFF--- - -GVMGAASAI  
S_Salar_3 ---SPFF--- - -AVMGASAAM  
P_marneffei_3 ---APFF--- - -GALGCTSAI  
P_stipitis_3 ---APFF--- - -GAIGCAASI  
A_fumigatus_11 ---APFF--- - -SFL---RIL  
A_gossypii_3 ---APFF--- - -GAIGCAAAI  
C_hominis_3 TPTATLF--- - -GMLGSTLAT  
C_muris_16 LAISPFH--- - FAYFGVAMCL  
X_laevis_16 TETSPYM--- - WANLGIGLAI  
M_mulatta_3 ---ASFF--- - -AVMGASAAM  
M_brevicollis_16 GTTSPYM--- - WAALGIAISI  
K_lactis_3 ---APFF--- - -GAIGCAAAI  
T_castaneum_16 EKTSPYM--- - WCTIGIGLAV  
Species Residue at Site 96
in 'muscle'
msaprobs

The residue for every species at site 96 of the muscle alignment can be found in the msaprobs alignment, but with a possibly different site number.

C_intestinalis_16 TNISPYA--- - FATTGIGLAM  
E_caballus_3 ---ASFF--- - -AVMGASAAM  
C_globosum_3 ------M--- - ----GCTAAI  
A_clavatus_3 ---APFF--- - -GALGCTSAI  
N_crassa_11 ---APFI--- - -GMAGIAAAM  
N_crassa_16 ESVSPYA--- - WADLGIALCI  
X_tropicalis_16 TETSPYM--- - WANLGIGLSI  
P_anserina_11 ---APFF--- - -GMAGIAAAM  
P_vivax_16 RSISPYN--- - WAMLGIAMAL  
P_anserina_16 ESVSPYA--- - WADTGIALCI  
H_sapiens_16 TETSPFM--- - WSNLGIGLAI  
T_annulata_3 ---SIFF--- - -GMMGVVCAM  
C_intestinalis_3 ---AAFF--- - -SSMGAASAM  
L_elongisporus_11 ---APWL--- - -GFAGCAAAM  
A_gossypii_16 SRTSPYM--- - WANLGISLCI  
A_pisum_16 ANTSPYM--- - WAVLGISLAV  
N_crassa_3 ---APFF--- - -GAMGCTAAI  
V_polyspora_3 ---APFF--- - -GAIGCAASI  
S_cerevisiae_3 ---APFF--- - -GAIGCASAI  
P_marneffei_16 ETVSPYT--- - WANIGIAMCI  
D_hansenii_3 ---APFF--- - -GSMGCAAAI  
S_pombe_11 ---SSFF--- - -GFAGVCASM  
T_guttata_3 ---ASFF--- - -AVMGASAAM  
S_pombe_16 LDTSPYT--- - WGLLGIASCV  
B_fuckeliana_3 ------M--- - ----GCTSAI  
Species Residue at Site 96
in 'muscle'
msaprobs

The residue for every species at site 96 of the muscle alignment can be found in the msaprobs alignment, but with a possibly different site number.

T_adhaerens_16 ESTSPFM--- - WADLGIGLAI  
S_cerevisiae_16 LRTSPYM--- - WANLGIALCV  
R_norvegicus_3 ---SSFF--- - -GVMGASSAM  
S_cerevisiae_11 ---APFF--- - -GFAGCAAAM  
B_taurus_3 ---ASFF--- - -AVMGASAAM  
C_familiaris_3 ---ASFF--- - -AVMGASAAM  
P_anserina_3 ---APFF--- - -GAMGCTAAI  
P_marneffei_11 ---APFF--- - -SFAGVAAAM  
P_knowlesi_3 ---SAFF--- - -GFMGIAASS  
T_guttata_16 TETSPYM--- - WCNLGIGLAI  
B_fuckeliana_11 ---APFF--- - -GMAGIAFAM  
C_cinerea_okayama_3 ---APFF--- - -SAMGCTAAI  
P_falciparum_16 RSISPYN--- - WAMLGIALSL  
N_vectensis_16 SESSPYM--- - WACLGIAIAI  
A_niger_11 ---APFF--- - -SFAGIAAAM  
A_niger_16 ESVSPYA--- - WANFGIAMCI  
C_parvum_3 ---SLFF--- - -GFLGIAGCL  
S_purpuratus_16 LAIPPYM--- - WADIGVGLSI  
B_floridae_3 ---VHFF--- - -GVMGATSAI  
Y_lipolytica_16 STTSPLM--- - WANLGIGMCI  
A_mellifera_3 ---APFF--- - -GVMGAASAI  
A_clavatus_16 EAVSPYA--- - WANLGIAMCI  
A_clavatus_11 ---APFF--- - -SFAGIASAM  
S_sclerotiorum_3 ---APFF--- - -GAMGCTAAI  
P_falciparum_3 ---SAFF--- - -GFMGIAASS  
Species Residue at Site 96
in 'muscle'
msaprobs

The residue for every species at site 96 of the muscle alignment can be found in the msaprobs alignment, but with a possibly different site number.

D_discoideum_16 VTISPST--- - WAALGIGLSL  
C_cinerea_okayama_11 ---------- - ---------M  
D_hansenii_16 ESTSPYM--- - WANLGIASCI  
D_hansenii_11 ---APFL--- - -GFAGCAAAM  
C_cinerea_okayama_16 EEISPYA--- - WGATGIGLCI  
P_vivax_3 ---SAFF--- - -GFMGIAASS  
C_immitis_3 ---APFF--- - -GALGCSSAI  
G_zeae_11 ---APFI--- - -GMAGIAAAM  
C_neoformans_3 ---APFF--- - -GAMGCTSAI  
H_sapiens_3 ---ASFF--- - -AVMGASAAM  
G_zeae_16 EAVSPYT--- - WATLGIAFCI  
Y_lipolytica_11 ---APFF--- - -GFAGCCAAM  
M_brevicollis_3 ---SSFF--- - -GVMGASAAM  
D_discoideum_3 ---APFF--- - -GAMGVTAAL  
P_stipitis_16 ESTSPYM--- - WACLGIASCI  
C_albicans_16 ESTSPYM--- - WASLGIGSCI  
C_albicans_11 ---APFL--- - -GFAGCAAAM  
P_stipitis_11 ---APFL--- - -GFAGCAAAM  
X_laevis_3 ---SAFF--- - -AVMGASSAM  
C_glabrata_11 ---APFF--- - -GFAGCALAM  
E_caballus_16 TETSPFM--- - WSNLGIGLAI  
C_glabrata_16 SKTSPYM--- - WANLGIASCI  
V_polyspora_11 ---APFF--- - -GFAGCAFAM  
V_polyspora_16 LKTSPYM--- - WASLGISLCI  
C_hominis_16 LSIPPLH--- - FAYLGVVLCI  
Species Residue at Site 96
in 'muscle'
msaprobs

The residue for every species at site 96 of the muscle alignment can be found in the msaprobs alignment, but with a possibly different site number.

C_globosum_11 ---APFI--- - -GMGGIAAAM  
C_globosum_16 ESVSPYA--- - WADLGIALCI  
O_mordax_16 TETSPFM--- - WANLGIGLAI  
D_rerio_16 TETSPFM--- - WANLGIGLAI  
B_bovis_3 ---SIFF--- - -GLMGAVSSM  
B_floridae_16 TETSPYM--- - WANLGVGLTI  
M_musculus_3 ---SSFF--- - -GVMGASSAM  
A_fumigatus_16 ESVSPYA--- - WANIGIALCI  
C_familiaris_16 TETSPFM--- - WSNLGIGLAI  
K_lactis_11 ---APFF--- - -GFAGCAFAM  
K_lactis_16 MKTSPYM--- - WANLGIALCI  
B_taurus_16 TETSPFM--- - WSNLGIGLAI  
S_sclerotiorum_16 EEISPYA--- - WADMGIGMCI  
S_sclerotiorum_11 ---APFF--- - ----GMLQGI  
R_norvegicus_16 TETSPFM--- - WSNLGIGLAI  

Generated by PhyloBot at 12:52, November 29th 2020
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