V-ATPase Ancestral Library

If you use these results in your work, please cite: Hanson-Smith and Johnson, PLoS Comp. Bio., 2016


Overview | Alignments | Sites | Trees | Ancestors | Mutations


Select an Alignment:

Select a Site:

Site 290 in Alignment 'muscle'


Similarity to Other Alignments

What percentage of the residues at this site are inferred to be a single site (i.e. homologous) in the alignments produced by other methods? A value of 100% indicates that the existence of site 290 is robust across multiple methods. Values less than 100% indicate that other alignment methods made different homology inferences.

Similarity of Site 290 in 'muscle'
to Sites in 'msaprobs'

What percentage of the residues at this site in muscle are inferred to be a single site (i.e. homologous) in the alignments produced by msaprobs? A value of 100% indicates that the existence of site 290 is reproduced using the msaprobs method. Values less than 100% indicate that msaprobs made different homology inferences for the residues at this site.


Species Residue at Site 290
in 'muscle'
msaprobs

The residue for every species at site 290 of the muscle alignment can be found in the msaprobs alignment, but with a possibly different site number.

M_musculus_16 KILIVEI-FG S AIGLFG---- Site 340
O_mordax_3 GMILILI-FA E VLGLYG---- Site 340
D_rerio_3 GMILILI-FA E VLGLYG---- Site 340
M_grisea_16 KILVIEI-FS S ILGLFG---- Site 340
M_grisea_11 GMVLILI-FG E VLGLYG---- Site 340
A_niger_3 GMILILI-FA E VLGLYG---- Site 340
C_glabrata_3 GMILILI-FS E VLGLYG---- Site 340
A_terreus_11 EKVFDFVWYP N MLAICSFLRN Site 340
A_terreus_16 KILVIEI-FS S VLGLFG---- Site 340
C_parvum_16 KMLVVEI-FA G ALGLFG---- Site 340
T_adhaerens_3 GMILILI-FA E VLGLYG---- Site 340
T_castaneum_3 GMILILI-FA E VLGLYG---- Site 340
X_tropicalis_3 GMILILI-FA E VLGLYG---- Site 340
G_zeae_3 GMILILI-FA E VLGLYG---- Site 340
L_elongisporus_3 GMILILI-FA E VLGLYG---- Site 340
A_fumigatus_3 GMILILI-FA E VLGLYG---- Site 340
M_grisea_3 GMILILI-FA E VLGLYG---- Site 340
S_pombe_3 AMILILI-FA E VLGLYG---- Site 340
C_albicans_3 GIVLILI-FA E VLGLYG---- Site 340
B_bovis_16 KILMVEI-FA G IIGLFG---- Site 340
C_muris_3 GMILILI-FG E ALAIYG---- Site 340
S_purpuratus_3 GMIIILI-FA E VLGLYG---- Site 340
C_immitis_16 KILVIEI-FS S ILGLFG---- Site 340
M_mulatta_16 KILIVEI-FG S AIGLFG---- Site 340
Y_lipolytica_3 GMILILI-FA E VLGLYG---- Site 340
Species Residue at Site 290
in 'muscle'
msaprobs

The residue for every species at site 290 of the muscle alignment can be found in the msaprobs alignment, but with a possibly different site number.

B_fuckeliana_16 KILVIEI-FS S VLGLFG---- Site 340
C_immitis_11 GMVLILI-FG E VLGLYGLMKS Site 340
A_mellifera_16 KILIVEI-FG S AIGLFG---- Site 340
A_gossypii_11 GIVLILI-FA E VLGLYG---- Site 340
T_annulata_16 KVLMVEI-FA S VLGLFG---- Site 340
N_vectensis_3 GMILILI-FA E VLGLYG---- Site 340
S_Salar_16 KILIVEI-FG S AIGLFG---- Site 340
L_elongisporus_16 KILVVEI-FG S VLGLFG---- Site 340
C_neoformans_16 KILIVEI-FG S VLGLFG---- Site 340
C_neoformans_11 SMVLILI-FA E VIGLYG---- Site 340
P_knowlesi_16 RMLMIEI-CA S VIGLYG---- Site 340
A_terreus_3 GMILILI-FA E VLGLYG---- Site 340
A_pisum_3 GMILILI-FA E VLGLYG---- Site 340
S_Salar_3 GMILILI-FA E VLGLYG---- Site 340
P_marneffei_3 GMILILI-FA E VLGLYG---- Site 340
P_stipitis_3 GMILILI-FA E VLGLYG---- Site 340
A_fumigatus_11 GMILILI-FG E VLGLYG---- Site 340
A_gossypii_3 GMILILI-FA E VLGLYG---- Site 340
C_hominis_3 ASMLILI-FG E ALAIYG---- Site 340
C_muris_16 KMLVVEI-FA S ALSLFG---- Site 340
X_laevis_16 KILIVEI-FG S AIGLFG---- Site 340
M_mulatta_3 GMILTLI-FA E VLGLYG---- Site 340
M_brevicollis_16 KILIVEI-FG S AIGLFG---- Site 340
K_lactis_3 GMILILI-FA E VLGLYG---- Site 340
T_castaneum_16 KILIVEI-FG S AIGLFG---- Site 340
Species Residue at Site 290
in 'muscle'
msaprobs

The residue for every species at site 290 of the muscle alignment can be found in the msaprobs alignment, but with a possibly different site number.

C_intestinalis_16 KVLIVEI-FG S AIGLFG---- Site 340
E_caballus_3 GMILILI-FA E VLGLYG---- Site 340
C_globosum_3 GMILILI-FA E VLGLYG---- Site 340
A_clavatus_3 GMILILI-FA E VLGLYG---- Site 340
N_crassa_11 GMVLILI-FG E VLGLYG---- Site 340
N_crassa_16 KILVIEI-FS S VLGLFG---- Site 340
X_tropicalis_16 KILIVEI-FG S AIGLFG---- Site 340
P_anserina_11 GMVLILI-FG E VLGLYG---- Site 340
P_vivax_16 RMLMIEI-CA S VIGLYG---- Site 340
P_anserina_16 KILVIEI-FS S VLGLFG---- Site 340
H_sapiens_16 KILIVEI-FG S AIGLFG---- Site 340
T_annulata_3 GMVLTLV-FA E TLALYG---- Site 340
C_intestinalis_3 GMILILI-FA E VLGLYG---- Site 340
L_elongisporus_11 GIVLILI-FA E VLGLYG---- Site 340
A_gossypii_16 KILVIEI-FG S VLGLLG---- Site 340
A_pisum_16 KILIVEI-FG S AIGLFG---- Site 340
N_crassa_3 GMILILI-FA E VLGLYG---- Site 340
V_polyspora_3 GMILILI-FA E VLGLYG---- Site 340
S_cerevisiae_3 GMILILI-FA E VLGLYG---- Site 340
P_marneffei_16 KILVIEI-FS S VLGLFG---- Site 340
D_hansenii_3 GMILILI-FA E VLGLYG---- Site 340
S_pombe_11 SMVLILI-FA E VLGLYG---- Site 340
T_guttata_3 GMILILI-FA E VLGLYG---- Site 340
S_pombe_16 KVLVVEI-FG S VLGLFG---- Site 340
B_fuckeliana_3 GMILILI-FA E VLGLYG---- Site 340
Species Residue at Site 290
in 'muscle'
msaprobs

The residue for every species at site 290 of the muscle alignment can be found in the msaprobs alignment, but with a possibly different site number.

T_adhaerens_16 KVLIVEI-FG S AIGLFG---- Site 340
S_cerevisiae_16 KILVIEI-FG S ILGLLG---- Site 340
R_norvegicus_3 GMILILI-FA E VLGLYG---- Site 340
S_cerevisiae_11 GIVLILI-FS E VLGLYG---- Site 340
B_taurus_3 GMILILI-FA E VLGLYG---- Site 340
C_familiaris_3 GMILILI-FA E VLGLYG---- Site 340
P_anserina_3 GMILILI-FA E VLGLYG---- Site 340
P_marneffei_11 GMILILI-FG E VLGLYG---- Site 340
P_knowlesi_3 GMILILV-FS E TLALYG---- Site 340
T_guttata_16 KILIVEI-FG S AIGLFG---- Site 340
B_fuckeliana_11 GMVLILI-FG E VLGLYG---- Site 340
C_cinerea_okayama_3 GMILILI-FS E VLGLYG---- Site 340
P_falciparum_16 RMLMIEI-CA S VIGLYG---- Site 340
N_vectensis_16 KILIVEI-FG S AIGLFG---- Site 340
A_niger_11 GMILILI-FG E VLGLYG---- Site 340
A_niger_16 KILVIEI-FS S VLGLFG---- Site 340
C_parvum_3 GMILILV-FG E ALAIYG---- Site 340
S_purpuratus_16 KVLIVEI-FG S AIGLFG---- Site 340
B_floridae_3 GMVLILI-FA E VLGLYG---- Site 340
Y_lipolytica_16 KILVIEI-FG S VLGLFG---- Site 340
A_mellifera_3 GMILILI-FA E VLGLYG---- Site 340
A_clavatus_16 KILVIEI-FS S VLGLFG---- Site 340
A_clavatus_11 GMILILI-FG E VLGLYG---- Site 340
S_sclerotiorum_3 GMILILI-FA E VLGLYG---- Site 340
P_falciparum_3 GMILILV-FS E TLALYG---- Site 340
Species Residue at Site 290
in 'muscle'
msaprobs

The residue for every species at site 290 of the muscle alignment can be found in the msaprobs alignment, but with a possibly different site number.

D_discoideum_16 KMLIIEI-FA G ALGLYA---- Site 340
C_cinerea_okayama_11 GMVLILI-FA E VLGLYG---- Site 340
D_hansenii_16 KILVIEI-FG S VLGLFG---- Site 340
D_hansenii_11 GIVLILI-FA E VLGLYG---- Site 340
C_cinerea_okayama_16 KILVVEV-FG S ILGLFG---- Site 340
P_vivax_3 GMILILV-FS E TLALYG---- Site 340
C_immitis_3 GMILILI-FA E VLGLYG---- Site 340
G_zeae_11 GMVLILI-FG E VLGLYG---- Site 340
C_neoformans_3 GMILILI-FA E VLGLYG---- Site 340
H_sapiens_3 GMILILI-FA E VLGLYG---- Site 340
G_zeae_16 KILVIEI-FS S VLGLFG---- Site 340
Y_lipolytica_11 GIVLILI-FA E VLGLYG---- Site 340
M_brevicollis_3 GMILILI-FA E VLGLYG---- Site 340
D_discoideum_3 IMMLILI-FS E ALGLYG---- Site 340
P_stipitis_16 KILVIEI-FG S VLGLFG---- Site 340
C_albicans_16 KILVVEI-FG S VLGLFG---- Site 340
C_albicans_11 GIVLILI-FA E VLGLYG---- Site 340
P_stipitis_11 GIVLILI-FA E VLGLYG---- Site 340
X_laevis_3 GMILILI-FA E VLGLYG---- Site 340
C_glabrata_11 GIVLILI-FS E VLGLYG---- Site 340
E_caballus_16 KILIVEI-FG S AIGLFG---- Site 340
C_glabrata_16 KILVIEI-FG S ILGLLG---- Site 340
V_polyspora_11 GIVLILI-FS E VLGLYG---- Site 340
V_polyspora_16 KILVIEI-FG S ILGLLG---- Site 340
C_hominis_16 KMLVVEI-FA G ALGLFG---- Site 340
Species Residue at Site 290
in 'muscle'
msaprobs

The residue for every species at site 290 of the muscle alignment can be found in the msaprobs alignment, but with a possibly different site number.

C_globosum_11 GMVLILI-FG E VLGLYG---- Site 340
C_globosum_16 KMLVIEI-FS S VLGLFG---- Site 340
O_mordax_16 KILIVEI-FG S AIGLFG---- Site 340
D_rerio_16 RILIVEI-FG S AIGLFG---- Site 340
B_bovis_3 GMVLTLV-FA E TLALYG---- Site 340
B_floridae_16 KILIVEI-FA S VIGLFG---- Site 340
M_musculus_3 GMILILI-FA E VLGLYG---- Site 340
A_fumigatus_16 KILVIEI-FS S VLGLFG---- Site 340
C_familiaris_16 KILIVEI-FG S AIGLFG---- Site 340
K_lactis_11 GIVLILI-FS E VLGLYG---- Site 340
K_lactis_16 KILVIEI-FG S VLGLLG---- Site 340
B_taurus_16 KILIVEI-FG S AIGLFG---- Site 340
S_sclerotiorum_16 KILVIEI-FS S VLGLFG---- Site 340
S_sclerotiorum_11 GMVLILI-FG E VLGLYG---- Site 340
R_norvegicus_16 KILIVEI-FG S AIGLFG---- Site 340

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