V-ATPase Ancestral Library

If you use these results in your work, please cite: Hanson-Smith and Johnson, PLoS Comp. Bio., 2016


Overview | Alignments | Sites | Trees | Ancestors | Mutations


Select an Alignment:

Select a Site:

Site 165 in Alignment 'muscle'


Similarity to Other Alignments

What percentage of the residues at this site are inferred to be a single site (i.e. homologous) in the alignments produced by other methods? A value of 100% indicates that the existence of site 165 is robust across multiple methods. Values less than 100% indicate that other alignment methods made different homology inferences.

Similarity of Site 165 in 'muscle'
to Sites in 'msaprobs'

What percentage of the residues at this site in muscle are inferred to be a single site (i.e. homologous) in the alignments produced by msaprobs? A value of 100% indicates that the existence of site 165 is reproduced using the msaprobs method. Values less than 100% indicate that msaprobs made different homology inferences for the residues at this site.


Species Residue at Site 165
in 'muscle'
msaprobs

The residue for every species at site 165 of the muscle alignment can be found in the msaprobs alignment, but with a possibly different site number.

M_musculus_16 ITGSSIIGGG V KAPRIKTKNL Site 208
O_mordax_3 KSGTGIAAMS V MRPELIMKSI Site 208
D_rerio_3 KSGTDIAAMS V MRPELIMKSI Site 208
M_grisea_16 ITGSSILGGG V KAPRIRTKNL Site 208
M_grisea_11 KSGIGIAGVG T FRPDLIMKCL Site 208
A_niger_3 KAGVGVCGMA V LRPDLIVKNI Site 208
C_glabrata_3 KSGVGVCVTC V LRPDLLIKSI Site 208
A_terreus_11 KSGIGISGVG T FRPDLIMKSL Site 208
A_terreus_16 LTGSSIVAGG V KAPRIRTKNL Site 208
C_parvum_16 TTGNSLVGAA L RSPRIRSKNL Site 208
T_adhaerens_3 KSGTGIAAMS V MRPELIMKSI Site 208
T_castaneum_3 KSGTGIAAMS V MRPELIMKSI Site 208
X_tropicalis_3 KSGTGIAAMS V MRPELIMKSI Site 208
G_zeae_3 KSGVGIAAMG V LRPDLIVKNI Site 208
L_elongisporus_3 KSGVGICATS V TRPDLLVKNV Site 208
A_fumigatus_3 KAGVGVCGMA V LRPDLIVKNI Site 208
M_grisea_3 KSGVGIAAMG V LRPDLIVKNI Site 208
S_pombe_3 KAGVGISAMG V LRPDLIVKNT Site 208
C_albicans_3 KSGIGIAGIG T FKPELIMKSL Site 208
B_bovis_16 LCGTSIMGGS V NSPRITVKNL Site 208
C_muris_3 RAGVGISSMG V MRPELIMKSI Site 208
S_purpuratus_3 KSGTGVAAMS V MRPELIMKSI Site 208
C_immitis_16 ITGSSIIGGG V KAPRIRTKNL Site 208
M_mulatta_16 ITGSSIIGGG V KAPRIKTKNL Site 208
Y_lipolytica_3 KSGVGICATS V LRPDLLIKNT Site 208
Species Residue at Site 165
in 'muscle'
msaprobs

The residue for every species at site 165 of the muscle alignment can be found in the msaprobs alignment, but with a possibly different site number.

B_fuckeliana_16 ITGSSILGGG V KAPRIRTKNL Site 208
C_immitis_11 KAGIGIANVG T FRPDLIMKSL Site 208
A_mellifera_16 TTGVSIIGGG V KAPRIKTKNL Site 208
A_gossypii_11 KSGIGISGIG T FRPELIMKSL Site 208
T_annulata_16 LCGPSIMGGS V KSPRITVKNL Site 208
N_vectensis_3 KSGTGIAAMS V MRPELIMKSI Site 208
S_Salar_16 ITGSSIIGGG V KAPRIKTKNL Site 208
L_elongisporus_16 ITGTSIIGAG V KAPRITTKNL Site 208
C_neoformans_16 VTGASILGGG V RAPRIRTKNL Site 208
C_neoformans_11 KAGIGIAGLG T FRPDLIMKSL Site 208
P_knowlesi_16 VCGTSIVGAS V KSPRIISKNL Site 208
A_terreus_3 KAGVGVCSMA V LRPDLIVKNI Site 208
A_pisum_3 KSGTGIAAMS V MRPELIMKSI Site 208
S_Salar_3 KSGTGIAAMS V MRPELIMKSI Site 208
P_marneffei_3 KAGVGVCGMA V LRPDLIVRNI Site 208
P_stipitis_3 KSGVGICATC V TRPDLLVKNV Site 208
A_fumigatus_11 KSGIGISGVG T FRPDLIMKSL Site 208
A_gossypii_3 KSGVSICATC V LRPDLLFKNI Site 208
C_hominis_3 KAGLAIASCG V MRPDLVMRSI Site 208
C_muris_16 TTGSSLVGAS V KSPRIRSKNL Site 208
X_laevis_16 ITGSSILGGG V KAPRIKTKNL Site 208
M_mulatta_3 KSRAGIAAMS V MRPELIMKSI Site 208
M_brevicollis_16 ITGASILGGG V MAPRIKTKNL Site 208
K_lactis_3 KSGVGICATC V LRPDLLFKNI Site 208
T_castaneum_16 TTGVSIIGGG V KAPRIKTKNL Site 208
Species Residue at Site 165
in 'muscle'
msaprobs

The residue for every species at site 165 of the muscle alignment can be found in the msaprobs alignment, but with a possibly different site number.

C_intestinalis_16 TTGSSIMGAG V ITPRIYSKNL Site 208
E_caballus_3 KSGTGIAAMS V MRPELIMKSI Site 208
C_globosum_3 KSGVGIAAMG V LRPDLIVKNI Site 208
A_clavatus_3 KAGVGVCGMA V LRPDLIVKNI Site 208
N_crassa_11 KSGIGIAGVG T FRPDLIMKCL Site 208
N_crassa_16 ITGSSILGGG V KAPRIRTKNL Site 208
X_tropicalis_16 ITGSSILGGG V KAPRIKTKNL Site 208
P_anserina_11 KAGIGIAGVG T FRPDLIMKCL Site 208
P_vivax_16 ICGTSIVGAS V KSPRIISKNL Site 208
P_anserina_16 ITGSSILGGG V KAPRIRTKNL Site 208
H_sapiens_16 ITGSSIIGGG V KAPRIKTKNL Site 208
T_annulata_3 RSGVGISSMG V MRPDLVMKSI Site 208
C_intestinalis_3 KSGTGIAAMS V MRPELIMKSV Site 208
L_elongisporus_11 KSGIGIAGIG T FKPELIMKSL Site 208
A_gossypii_16 ITGASIIGAG V RAPRITTKNL Site 208
A_pisum_16 TTGVSIVGGG V KAPRIKTKNL Site 208
N_crassa_3 KSGVGIAAMG V LRPDLIVKNI Site 208
V_polyspora_3 KSGVGICATC V LRPDLLIKNV Site 208
S_cerevisiae_3 KSGVGICATC V LRPDLLFKNI Site 208
P_marneffei_16 LTGSSILGGG V KAPRIRTKNL Site 208
D_hansenii_3 KSGVGICATC V LRPDLLVKNI Site 208
S_pombe_11 LAGRGIAAVG A FRPEIVMKSL Site 208
T_guttata_3 KSGTGIAAMS V MRPELIMKSI Site 208
S_pombe_16 ICGTSILGGA V KAPRIKTKNL Site 208
B_fuckeliana_3 KSGVGICAMG V LRPDLIVKNI Site 208
Species Residue at Site 165
in 'muscle'
msaprobs

The residue for every species at site 165 of the muscle alignment can be found in the msaprobs alignment, but with a possibly different site number.

T_adhaerens_16 ATGSSIVGGG V KAPRIKTKNL Site 208
S_cerevisiae_16 ITGSSMIGAG V RAPRITTKNL Site 208
R_norvegicus_3 KSGTGIAAMS V MRPELIMKSI Site 208
S_cerevisiae_11 KSGIGIAGIG T FKPELIMKSL Site 208
B_taurus_3 KSGTGIAAMS V MRPEMIMKSI Site 208
C_familiaris_3 KSGTGIAAMS V MRPELIMKSI Site 208
P_anserina_3 KSGVGIAAMG V LRPDLIVKNI Site 208
P_marneffei_11 KSGIGIAGVG Q YRPDLIMRSL Site 208
P_knowlesi_3 KSGVGVCSVG V MRPDLIMKSI Site 208
T_guttata_16 ITGSTIIAGG V KAPRIKTKNL Site 208
B_fuckeliana_11 KSGIGIAGVG T FRPDLIMKSL Site 208
C_cinerea_okayama_3 KSGVGISAMS V LRPDMMMKCS Site 208
P_falciparum_16 ICGTSIVGAS V KSPRIISKNL Site 208
N_vectensis_16 LTGASICGGG V KAPRIKAKNL Site 208
A_niger_11 KSGIGISGVG T FRPDLIMKSL Site 208
A_niger_16 LTGSSIVGGG V KAPRIRTKNL Site 208
C_parvum_3 KSGVGISSMA V MRPDLIMRSI Site 208
S_purpuratus_16 TTGTSIVGGG V KAPRIRTKNL Site 208
B_floridae_3 KSGMGIAAMS V MRPELIMKSI Site 208
Y_lipolytica_16 ITGSTIIGAG V KAPRITTKNL Site 208
A_mellifera_3 KSGTGIAAMS V MRPELIMKSI Site 208
A_clavatus_16 LTGSSIVGGG V RAPRIRTKNL Site 208
A_clavatus_11 KSGIGISGVG T FRPDLIMKSL Site 208
S_sclerotiorum_3 KSGVGICAMG V LRPDLIVKNI Site 208
P_falciparum_3 KSGVGVCSVG V MRPDLIMKSI Site 208
Species Residue at Site 165
in 'muscle'
msaprobs

The residue for every species at site 165 of the muscle alignment can be found in the msaprobs alignment, but with a possibly different site number.

D_discoideum_16 VTASSLMGAA V KEPRIRSKNI Site 208
C_cinerea_okayama_11 KAGIGIAGLG Q FKPELIMKSL Site 208
D_hansenii_16 ITGSSIIGAG V KAPRITTKNL Site 208
D_hansenii_11 KSGIGISGIG T FKPELIMKSL Site 208
C_cinerea_okayama_16 ---------- - ----------  
P_vivax_3 KSGVGVCSVG V MRPDLIMKSI Site 208
C_immitis_3 KAGVGVCSTA V LRPDLIVKNI Site 208
G_zeae_11 KSGIGIAGVG T FRPDLIMKCL Site 208
C_neoformans_3 KSGVGISAMA V LRPDLMMKCA Site 208
H_sapiens_3 KSGTGIAAMS V MRPEQIMKSI Site 208
G_zeae_16 ITGSSILGGG V KAPRIRTKNL Site 208
Y_lipolytica_11 KSGIGIAGIG V FKPELIMKSL Site 208
M_brevicollis_3 KSGTGIAAMS V MRPELIMKSI Site 208
D_discoideum_3 KASVGISNMG V MKPDLVIKAF Site 208
P_stipitis_16 ITGSTILGAG V KAPRITTKNL Site 208
C_albicans_16 ITGTSILGAG V KAPRITTKNL Site 208
C_albicans_11 KSGIGIAGIG T FKPELIMKSL Site 208
P_stipitis_11 KSGVGIAGIG T FKPELIMKSL Site 208
X_laevis_3 KSGTGIAAMS V MRPELIMKSI Site 208
C_glabrata_11 KSGIGIAGIG T FKPELIMKSL Site 208
E_caballus_16 ITGSSIIGGG V KAPRIKTKNL Site 208
C_glabrata_16 ITGSSMIGAG V RAPRITTKNL Site 208
V_polyspora_11 KSGIGIAGIG T FKPELLMKSL Site 208
V_polyspora_16 ITGSSIIGAG V RAPRITTKNL Site 208
C_hominis_16 TTGNSLVGAA L RSPRIRSKNL Site 208
Species Residue at Site 165
in 'muscle'
msaprobs

The residue for every species at site 165 of the muscle alignment can be found in the msaprobs alignment, but with a possibly different site number.

C_globosum_11 KSGIGIAGVG T FRPDLIMKCL Site 208
C_globosum_16 ITGSSILGGG V KAPRIRTKNL Site 208
O_mordax_16 ITGSSIIGGG V KAPRIKTKNL Site 208
D_rerio_16 ITGSSIIGGG V KAPRIKTKNL Site 208
B_bovis_3 RSGVGISSMG V MRPDLVMRSI Site 208
B_floridae_16 TTGSSIIGGG V KAPRIRTKNL Site 208
M_musculus_3 KSGTGIAAMS V MRPELIMKSI Site 208
A_fumigatus_16 LTGSSIVGGG V KAPRIRTKNL Site 208
C_familiaris_16 ITGSSIIGGG V KAPRIKTKNL Site 208
K_lactis_11 KSGIGISGIG T FKPELIMKSL Site 208
K_lactis_16 ITGSSIIGAG V RAPRITTKNL Site 208
B_taurus_16 ITGSSIIGGG V KAPRIKTKNL Site 208
S_sclerotiorum_16 ITGSSILGGG V KAPRIRTKNL Site 208
S_sclerotiorum_11 KSGIGIAGVG T FRPDLIMKSL Site 208
R_norvegicus_16 ITGSSIIGGG V KAPRIKTKNL Site 208

Generated by PhyloBot at 12:48, November 29th 2020
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