V-ATPase Ancestral Library

If you use these results in your work, please cite: Hanson-Smith and Johnson, PLoS Comp. Bio., 2016


Overview | Alignments | Sites | Trees | Ancestors | Mutations


Select an Alignment:

Select a Site:

Site 101 in Alignment 'muscle'


Similarity to Other Alignments

What percentage of the residues at this site are inferred to be a single site (i.e. homologous) in the alignments produced by other methods? A value of 100% indicates that the existence of site 101 is robust across multiple methods. Values less than 100% indicate that other alignment methods made different homology inferences.

Similarity of Site 101 in 'muscle'
to Sites in 'msaprobs'

What percentage of the residues at this site in muscle are inferred to be a single site (i.e. homologous) in the alignments produced by msaprobs? A value of 100% indicates that the existence of site 101 is reproduced using the msaprobs method. Values less than 100% indicate that msaprobs made different homology inferences for the residues at this site.


Species Residue at Site 101
in 'muscle'
msaprobs

The residue for every species at site 101 of the muscle alignment can be found in the msaprobs alignment, but with a possibly different site number.

M_musculus_16 FM----WSNL G IGLAI----- Site 144
O_mordax_3 FF-----AVM G ASAAM----- Site 144
D_rerio_3 FF-----AVM G ASSAM----- Site 144
M_grisea_16 FA----WASL G IALCI----- Site 144
M_grisea_11 FV-----GMA G IAAAM----- Site 144
A_niger_3 FF-----GAL G CTSAI----- Site 144
C_glabrata_3 FF-----GAI G CAAAI----- Site 144
A_terreus_11 FF---SFMIF G CTYFF----- Site 144
A_terreus_16 YA----WANL G IAMCI----- Site 144
C_parvum_16 LH----FAYL G VVLCI----- Site 144
T_adhaerens_3 FF-----GVM G ATAAM----- Site 144
T_castaneum_3 FF-----GVM G AAAAI----- Site 144
X_tropicalis_3 FF-----AVM G ASSAM----- Site 144
G_zeae_3 FF-----GAM G CTCAI----- Site 144
L_elongisporus_3 FF-----GSI G CAAAI----- Site 144
A_fumigatus_3 FF-----GAL G CTSAI----- Site 144
M_grisea_3 FF-----GAM G CTAAI----- Site 144
S_pombe_3 FF-----GVM G CTAAI----- Site 144
C_albicans_3 FL-----GFA G CAAAM----- Site 144
B_bovis_16 SF----WGYL G TFLAL----- Site 144
C_muris_3 FF-----GFM G IAGCV----- Site 144
S_purpuratus_3 FF-----GVM G ATSAM----- Site 144
C_immitis_16 YA----WANI G IGLCV----- Site 144
M_mulatta_16 FM----WSNL G IGLAI----- Site 144
Y_lipolytica_3 FF-----GAI G CTAAI----- Site 144
Species Residue at Site 101
in 'muscle'
msaprobs

The residue for every species at site 101 of the muscle alignment can be found in the msaprobs alignment, but with a possibly different site number.

B_fuckeliana_16 ------WSES N ---------- Site 187
C_immitis_11 FF-----GMA G IASAVNDIRM Site 144
A_mellifera_16 YM----WATL G IGLAV----- Site 144
A_gossypii_11 FF-----GFA G CAAAM----- Site 144
T_annulata_16 SF----WGYL G IFFSL----- Site 144
N_vectensis_3 FF-----GVM G ATAAM----- Site 144
S_Salar_16 FM----WANL G IGLAI----- Site 144
L_elongisporus_16 YM----WASL G IASCI----- Site 144
C_neoformans_16 YA----WALV G VGLCI----- Site 144
C_neoformans_11 ILRLTDNSFA G VTSAI----- Site 144
P_knowlesi_16 YN----WAML G IAMAL----- Site 144
A_terreus_3 FF-----GAL G CTSAI----- Site 144
A_pisum_3 FF-----GVM G AASAI----- Site 144
S_Salar_3 FF-----AVM G ASAAM----- Site 144
P_marneffei_3 FF-----GAL G CTSAI----- Site 144
P_stipitis_3 FF-----GAI G CAASI----- Site 144
A_fumigatus_11 FF-----SFL - --RIL-----  
A_gossypii_3 FF-----GAI G CAAAI----- Site 144
C_hominis_3 LF-----GML G STLAT----- Site 144
C_muris_16 FH----FAYF G VAMCL----- Site 144
X_laevis_16 YM----WANL G IGLAI----- Site 144
M_mulatta_3 FF-----AVM G ASAAM----- Site 144
M_brevicollis_16 YM----WAAL G IAISI----- Site 144
K_lactis_3 FF-----GAI G CAAAI----- Site 144
T_castaneum_16 YM----WCTI G IGLAV----- Site 144
Species Residue at Site 101
in 'muscle'
msaprobs

The residue for every species at site 101 of the muscle alignment can be found in the msaprobs alignment, but with a possibly different site number.

C_intestinalis_16 YA----FATT G IGLAM----- Site 144
E_caballus_3 FF-----AVM G ASAAM----- Site 144
C_globosum_3 -M-------- G CTAAI----- Site 144
A_clavatus_3 FF-----GAL G CTSAI----- Site 144
N_crassa_11 FI-----GMA G IAAAM----- Site 144
N_crassa_16 YA----WADL G IALCI----- Site 144
X_tropicalis_16 YM----WANL G IGLSI----- Site 144
P_anserina_11 FF-----GMA G IAAAM----- Site 144
P_vivax_16 YN----WAML G IAMAL----- Site 144
P_anserina_16 YA----WADT G IALCI----- Site 144
H_sapiens_16 FM----WSNL G IGLAI----- Site 144
T_annulata_3 FF-----GMM G VVCAM----- Site 144
C_intestinalis_3 FF-----SSM G AASAM----- Site 144
L_elongisporus_11 WL-----GFA G CAAAM----- Site 144
A_gossypii_16 YM----WANL G ISLCI----- Site 144
A_pisum_16 YM----WAVL G ISLAV----- Site 144
N_crassa_3 FF-----GAM G CTAAI----- Site 144
V_polyspora_3 FF-----GAI G CAASI----- Site 144
S_cerevisiae_3 FF-----GAI G CASAI----- Site 144
P_marneffei_16 YT----WANI G IAMCI----- Site 144
D_hansenii_3 FF-----GSM G CAAAI----- Site 144
S_pombe_11 FF-----GFA G VCASM----- Site 144
T_guttata_3 FF-----AVM G ASAAM----- Site 144
S_pombe_16 YT----WGLL G IASCV----- Site 144
B_fuckeliana_3 -M-------- G CTSAI----- Site 144
Species Residue at Site 101
in 'muscle'
msaprobs

The residue for every species at site 101 of the muscle alignment can be found in the msaprobs alignment, but with a possibly different site number.

T_adhaerens_16 FM----WADL G IGLAI----- Site 144
S_cerevisiae_16 YM----WANL G IALCV----- Site 144
R_norvegicus_3 FF-----GVM G ASSAM----- Site 144
S_cerevisiae_11 FF-----GFA G CAAAM----- Site 144
B_taurus_3 FF-----AVM G ASAAM----- Site 144
C_familiaris_3 FF-----AVM G ASAAM----- Site 144
P_anserina_3 FF-----GAM G CTAAI----- Site 144
P_marneffei_11 FF-----SFA G VAAAM----- Site 144
P_knowlesi_3 FF-----GFM G IAASS----- Site 144
T_guttata_16 YM----WCNL G IGLAI----- Site 144
B_fuckeliana_11 FF-----GMA G IAFAM----- Site 144
C_cinerea_okayama_3 FF-----SAM G CTAAI----- Site 144
P_falciparum_16 YN----WAML G IALSL----- Site 144
N_vectensis_16 YM----WACL G IAIAI----- Site 144
A_niger_11 FF-----SFA G IAAAM----- Site 144
A_niger_16 YA----WANF G IAMCI----- Site 144
C_parvum_3 FF-----GFL G IAGCL----- Site 144
S_purpuratus_16 YM----WADI G VGLSI----- Site 144
B_floridae_3 FF-----GVM G ATSAI----- Site 144
Y_lipolytica_16 LM----WANL G IGMCI----- Site 144
A_mellifera_3 FF-----GVM G AASAI----- Site 144
A_clavatus_16 YA----WANL G IAMCI----- Site 144
A_clavatus_11 FF-----SFA G IASAM----- Site 144
S_sclerotiorum_3 FF-----GAM G CTAAI----- Site 144
P_falciparum_3 FF-----GFM G IAASS----- Site 144
Species Residue at Site 101
in 'muscle'
msaprobs

The residue for every species at site 101 of the muscle alignment can be found in the msaprobs alignment, but with a possibly different site number.

D_discoideum_16 ST----WAAL G IGLSL----- Site 144
C_cinerea_okayama_11 ---------- - ----M-----  
D_hansenii_16 YM----WANL G IASCI----- Site 144
D_hansenii_11 FL-----GFA G CAAAM----- Site 144
C_cinerea_okayama_16 YA----WGAT G IGLCI----- Site 144
P_vivax_3 FF-----GFM G IAASS----- Site 144
C_immitis_3 FF-----GAL G CSSAI----- Site 144
G_zeae_11 FI-----GMA G IAAAM----- Site 144
C_neoformans_3 FF-----GAM G CTSAI----- Site 144
H_sapiens_3 FF-----AVM G ASAAM----- Site 144
G_zeae_16 YT----WATL G IAFCI----- Site 144
Y_lipolytica_11 FF-----GFA G CCAAM----- Site 144
M_brevicollis_3 FF-----GVM G ASAAM----- Site 144
D_discoideum_3 FF-----GAM G VTAAL----- Site 144
P_stipitis_16 YM----WACL G IASCI----- Site 144
C_albicans_16 YM----WASL G IGSCI----- Site 144
C_albicans_11 FL-----GFA G CAAAM----- Site 144
P_stipitis_11 FL-----GFA G CAAAM----- Site 144
X_laevis_3 FF-----AVM G ASSAM----- Site 144
C_glabrata_11 FF-----GFA G CALAM----- Site 144
E_caballus_16 FM----WSNL G IGLAI----- Site 144
C_glabrata_16 YM----WANL G IASCI----- Site 144
V_polyspora_11 FF-----GFA G CAFAM----- Site 144
V_polyspora_16 YM----WASL G ISLCI----- Site 144
C_hominis_16 LH----FAYL G VVLCI----- Site 144
Species Residue at Site 101
in 'muscle'
msaprobs

The residue for every species at site 101 of the muscle alignment can be found in the msaprobs alignment, but with a possibly different site number.

C_globosum_11 FI-----GMG G IAAAM----- Site 144
C_globosum_16 YA----WADL G IALCI----- Site 144
O_mordax_16 FM----WANL G IGLAI----- Site 144
D_rerio_16 FM----WANL G IGLAI----- Site 144
B_bovis_3 FF-----GLM G AVSSM----- Site 144
B_floridae_16 YM----WANL G VGLTI----- Site 144
M_musculus_3 FF-----GVM G ASSAM----- Site 144
A_fumigatus_16 YA----WANI G IALCI----- Site 144
C_familiaris_16 FM----WSNL G IGLAI----- Site 144
K_lactis_11 FF-----GFA G CAFAM----- Site 144
K_lactis_16 YM----WANL G IALCI----- Site 144
B_taurus_16 FM----WSNL G IGLAI----- Site 144
S_sclerotiorum_16 YA----WADM G IGMCI----- Site 144
S_sclerotiorum_11 FF-------- G MLQGI----- Site 139
R_norvegicus_16 FM----WSNL G IGLAI----- Site 144

Generated by PhyloBot at 13:49, November 29th 2020
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