V-ATPase Ancestral Library

If you use these results in your work, please cite: Hanson-Smith and Johnson, PLoS Comp. Bio., 2016


Overview | Alignments | Sites | Trees | Ancestors | Mutations


Select an Alignment:

Select a Site:

Site 356 in Alignment 'msaprobs'


Similarity to Other Alignments

What percentage of the residues at this site are inferred to be a single site (i.e. homologous) in the alignments produced by other methods? A value of 100% indicates that the existence of site 356 is robust across multiple methods. Values less than 100% indicate that other alignment methods made different homology inferences.

Similarity of Site 356 in 'msaprobs'
to Sites in 'muscle'

What percentage of the residues at this site in msaprobs are inferred to be a single site (i.e. homologous) in the alignments produced by muscle? A value of 100% indicates that the existence of site 356 is reproduced using the muscle method. Values less than 100% indicate that muscle made different homology inferences for the residues at this site.


Species Residue at Site 356
in 'msaprobs'
muscle

The residue for every species at site 356 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

M_musculus_16 GVI-----VA I LQTSRVKM-- Site 306
O_mordax_3 GLI-----VA L ILSTK----- Site 306
D_rerio_3 GLI-----VA L ILSTKG---- Site 306
M_grisea_16 GLI-----IG L LTSGKAND-- Site 306
M_grisea_11 GLI-----VA L ILNTRSQ--- Site 306
A_niger_3 GLI-----VA L LMNSRSRI-D Site 306
C_glabrata_3 GLI-----VA L LMNSRATQ-D Site 306
A_terreus_11 SFL-----RN V LCPSIYAL-Y Site 301
A_terreus_16 GLI-----VG L LVGGKATD-- Site 306
C_parvum_16 GMI-----VG F YQLSLADF-P Site 306
T_adhaerens_3 GLI-----VA L IMSTKS---- Site 306
T_castaneum_3 GLI-----VA I YLYTK----- Site 306
X_tropicalis_3 GLI-----VA L ILSTK----- Site 306
G_zeae_3 GLI-----VA L LMNSKATV-D Site 306
L_elongisporus_3 GLI-----VA L LLNSRASQ-D Site 306
A_fumigatus_3 GLI-----VA L LMNSRSRI-D Site 306
M_grisea_3 GLI-----VA L LMNSKATL-N Site 306
S_pombe_3 GLI-----VA L LLNTRATD-N Site 306
C_albicans_3 GMI-----IA L ILNTKGS--- Site 306
B_bovis_16 GVI-----FA V LLLSTM---- Site 306
C_muris_3 GLI-----VG L ILGTTKVP-G Site 306
S_purpuratus_3 GLI-----VA L VLSTK----- Site 306
C_immitis_16 GLI-----VG L LIQGKAKD-- Site 306
M_mulatta_16 GVI-----VA I LQTSRVKM-- Site 306
Y_lipolytica_3 GLI-----VA L LLNSKAGA-D Site 306
Species Residue at Site 356
in 'msaprobs'
muscle

The residue for every species at site 356 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

B_fuckeliana_16 GLI-----IG L LVSSKAPD-- Site 306
C_immitis_11 GLMKSSLIVA L ILNSK----- Site 306
A_mellifera_16 GLI-----VG I YMTSKVKM-G Site 306
A_gossypii_11 GMI-----IA L ILNTRGS--- Site 306
T_annulata_16 GVI-----VG V IIVSLV---- Site 306
N_vectensis_3 GLI-----VA L ILTTKNS--- Site 306
S_Salar_16 GVI-----VA I LQTSKVKM-- Site 306
L_elongisporus_16 GLI-----VG L LMTGKAQE-- Site 306
C_neoformans_16 GLI-----VG L LIVSRPPT-- Site 306
C_neoformans_11 GLI-----VA L ILNTAVGE-A Site 306
P_knowlesi_16 GLI-----VA I VSIGDIQ--- Site 306
A_terreus_3 GLI-----VA L LMNSRGSI-D Site 306
A_pisum_3 GLI-----VA I YLYTK----- Site 306
S_Salar_3 GLI-----VA L ILSTK----- Site 306
P_marneffei_3 GLI-----VA L LMNSRSRG-- Site 306
P_stipitis_3 GLI-----VA L LLNSKAAQ-D Site 306
A_fumigatus_11 GLI-----VG L ILNSKS---- Site 306
A_gossypii_3 GLI-----VA L LLNSRATQ-D Site 306
C_hominis_3 GII-----VS L VLISSPSA-N Site 306
C_muris_16 GMI-----VG F YQLSLAHFPS Site 306
X_laevis_16 GVI-----VA I LQTSKVKM-- Site 306
M_mulatta_3 GLI-----VA L IHSTE----- Site 306
M_brevicollis_16 GII-----IA I IQTQGKQF-G Site 306
K_lactis_3 GLI-----VA L LLNSRATQ-D Site 306
T_castaneum_16 GLI-----VG I YMVSKASM-G Site 306
Species Residue at Site 356
in 'msaprobs'
muscle

The residue for every species at site 356 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

C_intestinalis_16 GLI-----VA I IMSTKAKM-V Site 306
E_caballus_3 GLI-----VA L ILSTK----- Site 306
C_globosum_3 GLI-----VA L LMNSKATL-N Site 306
A_clavatus_3 GLI-----VA L LMNSRAKI-D Site 306
N_crassa_11 GLI-----VA L ILNTKSK--- Site 306
N_crassa_16 GLI-----VG L LVSGKAPD-- Site 306
X_tropicalis_16 GVI-----VA I LQTSKVKM-- Site 306
P_anserina_11 GLI-----VG L ILNTKSK--- Site 306
P_vivax_16 GLI-----VA I VSIGDIQ--- Site 306
P_anserina_16 GLI-----IG L LVAGKAED-- Site 306
H_sapiens_16 GVI-----VA I LQTSRVKM-- Site 306
T_annulata_3 GLI-----IG L VVAMKAPK-G Site 306
C_intestinalis_3 GLI-----TA L VLVVKGG--- Site 306
L_elongisporus_11 GMI-----IA L ILNTKG---- Site 306
A_gossypii_16 GLI-----VG L LMAGKTVE-- Site 306
A_pisum_16 GLI-----VG I YITSKVKM-G Site 306
N_crassa_3 GLI-----VA L LMNSKATL-N Site 306
V_polyspora_3 GLI-----VA L LLNSRATQ-D Site 306
S_cerevisiae_3 GLI-----VA L LLNSRATQ-D Site 306
P_marneffei_16 GLI-----IG L LVSGRANE-- Site 306
D_hansenii_3 GLI-----VA L LLNSRATQ-D Site 306
S_pombe_11 GLI-----VG L ILQTKTSN-- Site 306
T_guttata_3 GLI-----VA L ILSTK----- Site 306
S_pombe_16 GLI-----VG L LIGGKASD-- Site 306
B_fuckeliana_3 GLI-----VA L LMNSKASL-D Site 306
Species Residue at Site 356
in 'msaprobs'
muscle

The residue for every species at site 356 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

T_adhaerens_16 GVI-----IG I IQVSKSGM-G Site 306
S_cerevisiae_16 GLI-----VG L LMAGKASE-- Site 306
R_norvegicus_3 GLI-----VA L ILSTK----- Site 306
S_cerevisiae_11 GMI-----VA L ILNTRGS--- Site 306
B_taurus_3 GLI-----VA L ILSTK----- Site 306
C_familiaris_3 GLI-----VA L ILSTK----- Site 306
P_anserina_3 GLI-----VA L LMNSKATI-N Site 306
P_marneffei_11 GLI-----VG L ILNSRSG--- Site 306
P_knowlesi_3 GLI-----IG I YISISDTP-K Site 306
T_guttata_16 GVI-----VA I LQTSKVKM-- Site 306
B_fuckeliana_11 G--------- - ----------  
C_cinerea_okayama_3 GLI-----VA L IMNTKAQA-M Site 306
P_falciparum_16 GLI-----VA I VSIGDIQ--- Site 306
N_vectensis_16 GVI-----IA I IQASDASM-E Site 306
A_niger_11 GLI-----VG L ILNSKSS--- Site 306
A_niger_16 GLI-----VG L LVGGKALD-- Site 306
C_parvum_3 GVI-----IG I IMGTTKPT-G Site 306
S_purpuratus_16 GVI-----VG I LQASKYSF-K Site 306
B_floridae_3 GLI-----VA L ILSTKK---- Site 306
Y_lipolytica_16 GLI-----VG L LMAGKASE-- Site 306
A_mellifera_3 GLI-----VA I YLYTK----- Site 306
A_clavatus_16 GLI-----IG L LVGQKATD-- Site 306
A_clavatus_11 GLI-----VG L ILNSKS---- Site 306
S_sclerotiorum_3 GLI-----VA L LMNSKASL-D Site 306
P_falciparum_3 GLI-----IG I YISIAETP-K Site 306
Species Residue at Site 356
in 'msaprobs'
muscle

The residue for every species at site 356 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

D_discoideum_16 AVI-----VG I LMTTNALG-V Site 306
C_cinerea_okayama_11 GLI-----VA L IMNTKVSS-Q Site 306
D_hansenii_16 GLI-----VG L LMAGKALE-- Site 306
D_hansenii_11 GMI-----IA L ILNTKGS--- Site 306
C_cinerea_okayama_16 GLI-----VG L IMVGSAGD-F Site 306
P_vivax_3 GLI-----IG I YISISDTP-K Site 306
C_immitis_3 GLI-----VA L LMNSRASG-- Site 306
G_zeae_11 GLI-----VA L ILNTKSK--- Site 306
C_neoformans_3 GLI-----VA L ILNTNSAV-D Site 306
H_sapiens_3 GLI-----VA L ILSTK----- Site 306
G_zeae_16 GLI-----IG L LVSSKAPA-- Site 306
Y_lipolytica_11 GMI-----IA L ILNTKGS--- Site 306
M_brevicollis_3 GLI-----VA L ILNTKASK-G Site 306
D_discoideum_3 GLI-----IG I LLSSVSDT-Y Site 306
P_stipitis_16 GLI-----VG L LMAGKAQE-- Site 306
C_albicans_16 GLI-----VG L LMTGKAQE-- Site 306
C_albicans_11 GMI-----IA L ILNTKGS--- Site 306
P_stipitis_11 GMI-----IA L ILNTKGS--- Site 306
X_laevis_3 GLI-----VA L ILSTK----- Site 306
C_glabrata_11 GMI-----IA L ILNTKGS--- Site 306
E_caballus_16 GVI-----VA I LQTSRVKM-- Site 306
C_glabrata_16 GLI-----VG L LMAGKAAD-- Site 306
V_polyspora_11 GMI-----VA L ILNTKGS--- Site 306
V_polyspora_16 GLI-----VG L LMTEKAAE-- Site 306
C_hominis_16 GMI-----VG F YQLSLADF-P Site 306
Species Residue at Site 356
in 'msaprobs'
muscle

The residue for every species at site 356 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

C_globosum_11 GLI-----VA L ILNTKSK--- Site 306
C_globosum_16 GLI-----VG L LVSNKAPD-- Site 306
O_mordax_16 GVI-----VA I LQTSKVKM-- Site 306
D_rerio_16 GVI-----VA I LQTSKVKM-- Site 306
B_bovis_3 GLI-----VG L IVALKPVA-G Site 306
B_floridae_16 GVI-----IG I IQTSRVSM-G Site 306
M_musculus_3 GLI-----VA L ILSTK----- Site 306
A_fumigatus_16 GLI-----IG L LVGGKATD-- Site 306
C_familiaris_16 GVI-----VA I LQTSRVKM-- Site 306
K_lactis_11 GMI-----VA L ILNTRGS--- Site 306
K_lactis_16 GLI-----VG L LMAGKAVE-- Site 306
B_taurus_16 GVI-----VA I LQTSRVKM-- Site 306
S_sclerotiorum_16 GLI-----IG L LVSSKAPD-- Site 306
S_sclerotiorum_11 GLI-----VA L ILNTKSR--- Site 306
R_norvegicus_16 GVI-----VA I LQTSRVKM-- Site 306

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