V-ATPase Ancestral Library

If you use these results in your work, please cite: Hanson-Smith and Johnson, PLoS Comp. Bio., 2016


Overview | Alignments | Sites | Trees | Ancestors | Mutations


Select an Alignment:

Select a Site:

Site 355 in Alignment 'msaprobs'


Similarity to Other Alignments

What percentage of the residues at this site are inferred to be a single site (i.e. homologous) in the alignments produced by other methods? A value of 100% indicates that the existence of site 355 is robust across multiple methods. Values less than 100% indicate that other alignment methods made different homology inferences.

Similarity of Site 355 in 'msaprobs'
to Sites in 'muscle'

What percentage of the residues at this site in msaprobs are inferred to be a single site (i.e. homologous) in the alignments produced by muscle? A value of 100% indicates that the existence of site 355 is reproduced using the muscle method. Values less than 100% indicate that muscle made different homology inferences for the residues at this site.


Species Residue at Site 355
in 'msaprobs'
muscle

The residue for every species at site 355 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

M_musculus_16 FGVI-----V A ILQTSRVKM- Site 305
O_mordax_3 YGLI-----V A LILSTK---- Site 305
D_rerio_3 YGLI-----V A LILSTKG--- Site 305
M_grisea_16 FGLI-----I G LLTSGKAND- Site 305
M_grisea_11 YGLI-----V A LILNTRSQ-- Site 305
A_niger_3 YGLI-----V A LLMNSRSRI- Site 305
C_glabrata_3 YGLI-----V A LLMNSRATQ- Site 305
A_terreus_11 CSFL-----R N VLCPSIYAL- Site 300
A_terreus_16 FGLI-----V G LLVGGKATD- Site 305
C_parvum_16 FGMI-----V G FYQLSLADF- Site 305
T_adhaerens_3 YGLI-----V A LIMSTKS--- Site 305
T_castaneum_3 YGLI-----V A IYLYTK---- Site 305
X_tropicalis_3 YGLI-----V A LILSTK---- Site 305
G_zeae_3 YGLI-----V A LLMNSKATV- Site 305
L_elongisporus_3 YGLI-----V A LLLNSRASQ- Site 305
A_fumigatus_3 YGLI-----V A LLMNSRSRI- Site 305
M_grisea_3 YGLI-----V A LLMNSKATL- Site 305
S_pombe_3 YGLI-----V A LLLNTRATD- Site 305
C_albicans_3 YGMI-----I A LILNTKGS-- Site 305
B_bovis_16 FGVI-----F A VLLLSTM--- Site 305
C_muris_3 YGLI-----V G LILGTTKVP- Site 305
S_purpuratus_3 YGLI-----V A LVLSTK---- Site 305
C_immitis_16 FGLI-----V G LLIQGKAKD- Site 305
M_mulatta_16 FGVI-----V A ILQTSRVKM- Site 305
Y_lipolytica_3 YGLI-----V A LLLNSKAGA- Site 305
Species Residue at Site 355
in 'msaprobs'
muscle

The residue for every species at site 355 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

B_fuckeliana_16 FGLI-----I G LLVSSKAPD- Site 305
C_immitis_11 YGLMKSSLIV A LILNSK---- Site 305
A_mellifera_16 FGLI-----V G IYMTSKVKM- Site 305
A_gossypii_11 YGMI-----I A LILNTRGS-- Site 305
T_annulata_16 FGVI-----V G VIIVSLV--- Site 305
N_vectensis_3 YGLI-----V A LILTTKNS-- Site 305
S_Salar_16 FGVI-----V A ILQTSKVKM- Site 305
L_elongisporus_16 FGLI-----V G LLMTGKAQE- Site 305
C_neoformans_16 FGLI-----V G LLIVSRPPT- Site 305
C_neoformans_11 YGLI-----V A LILNTAVGE- Site 305
P_knowlesi_16 YGLI-----V A IVSIGDIQ-- Site 305
A_terreus_3 YGLI-----V A LLMNSRGSI- Site 305
A_pisum_3 YGLI-----V A IYLYTK---- Site 305
S_Salar_3 YGLI-----V A LILSTK---- Site 305
P_marneffei_3 YGLI-----V A LLMNSRSRG- Site 305
P_stipitis_3 YGLI-----V A LLLNSKAAQ- Site 305
A_fumigatus_11 YGLI-----V G LILNSKS--- Site 305
A_gossypii_3 YGLI-----V A LLLNSRATQ- Site 305
C_hominis_3 YGII-----V S LVLISSPSA- Site 305
C_muris_16 FGMI-----V G FYQLSLAHFP Site 305
X_laevis_16 FGVI-----V A ILQTSKVKM- Site 305
M_mulatta_3 YGLI-----V A LIHSTE---- Site 305
M_brevicollis_16 FGII-----I A IIQTQGKQF- Site 305
K_lactis_3 YGLI-----V A LLLNSRATQ- Site 305
T_castaneum_16 FGLI-----V G IYMVSKASM- Site 305
Species Residue at Site 355
in 'msaprobs'
muscle

The residue for every species at site 355 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

C_intestinalis_16 FGLI-----V A IIMSTKAKM- Site 305
E_caballus_3 YGLI-----V A LILSTK---- Site 305
C_globosum_3 YGLI-----V A LLMNSKATL- Site 305
A_clavatus_3 YGLI-----V A LLMNSRAKI- Site 305
N_crassa_11 YGLI-----V A LILNTKSK-- Site 305
N_crassa_16 FGLI-----V G LLVSGKAPD- Site 305
X_tropicalis_16 FGVI-----V A ILQTSKVKM- Site 305
P_anserina_11 YGLI-----V G LILNTKSK-- Site 305
P_vivax_16 YGLI-----V A IVSIGDIQ-- Site 305
P_anserina_16 FGLI-----I G LLVAGKAED- Site 305
H_sapiens_16 FGVI-----V A ILQTSRVKM- Site 305
T_annulata_3 YGLI-----I G LVVAMKAPK- Site 305
C_intestinalis_3 YGLI-----T A LVLVVKGG-- Site 305
L_elongisporus_11 YGMI-----I A LILNTKG--- Site 305
A_gossypii_16 LGLI-----V G LLMAGKTVE- Site 305
A_pisum_16 FGLI-----V G IYITSKVKM- Site 305
N_crassa_3 YGLI-----V A LLMNSKATL- Site 305
V_polyspora_3 YGLI-----V A LLLNSRATQ- Site 305
S_cerevisiae_3 YGLI-----V A LLLNSRATQ- Site 305
P_marneffei_16 FGLI-----I G LLVSGRANE- Site 305
D_hansenii_3 YGLI-----V A LLLNSRATQ- Site 305
S_pombe_11 YGLI-----V G LILQTKTSN- Site 305
T_guttata_3 YGLI-----V A LILSTK---- Site 305
S_pombe_16 FGLI-----V G LLIGGKASD- Site 305
B_fuckeliana_3 YGLI-----V A LLMNSKASL- Site 305
Species Residue at Site 355
in 'msaprobs'
muscle

The residue for every species at site 355 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

T_adhaerens_16 FGVI-----I G IIQVSKSGM- Site 305
S_cerevisiae_16 LGLI-----V G LLMAGKASE- Site 305
R_norvegicus_3 YGLI-----V A LILSTK---- Site 305
S_cerevisiae_11 YGMI-----V A LILNTRGS-- Site 305
B_taurus_3 YGLI-----V A LILSTK---- Site 305
C_familiaris_3 YGLI-----V A LILSTK---- Site 305
P_anserina_3 YGLI-----V A LLMNSKATI- Site 305
P_marneffei_11 YGLI-----V G LILNSRSG-- Site 305
P_knowlesi_3 YGLI-----I G IYISISDTP- Site 305
T_guttata_16 FGVI-----V A ILQTSKVKM- Site 305
B_fuckeliana_11 YG-------- - ----------  
C_cinerea_okayama_3 YGLI-----V A LIMNTKAQA- Site 305
P_falciparum_16 YGLI-----V A IVSIGDIQ-- Site 305
N_vectensis_16 FGVI-----I A IIQASDASM- Site 305
A_niger_11 YGLI-----V G LILNSKSS-- Site 305
A_niger_16 FGLI-----V G LLVGGKALD- Site 305
C_parvum_3 YGVI-----I G IIMGTTKPT- Site 305
S_purpuratus_16 FGVI-----V G ILQASKYSF- Site 305
B_floridae_3 YGLI-----V A LILSTKK--- Site 305
Y_lipolytica_16 FGLI-----V G LLMAGKASE- Site 305
A_mellifera_3 YGLI-----V A IYLYTK---- Site 305
A_clavatus_16 FGLI-----I G LLVGQKATD- Site 305
A_clavatus_11 YGLI-----V G LILNSKS--- Site 305
S_sclerotiorum_3 YGLI-----V A LLMNSKASL- Site 305
P_falciparum_3 YGLI-----I G IYISIAETP- Site 305
Species Residue at Site 355
in 'msaprobs'
muscle

The residue for every species at site 355 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

D_discoideum_16 YAVI-----V G ILMTTNALG- Site 305
C_cinerea_okayama_11 YGLI-----V A LIMNTKVSS- Site 305
D_hansenii_16 FGLI-----V G LLMAGKALE- Site 305
D_hansenii_11 YGMI-----I A LILNTKGS-- Site 305
C_cinerea_okayama_16 FGLI-----V G LIMVGSAGD- Site 305
P_vivax_3 YGLI-----I G IYISISDTP- Site 305
C_immitis_3 YGLI-----V A LLMNSRASG- Site 305
G_zeae_11 YGLI-----V A LILNTKSK-- Site 305
C_neoformans_3 YGLI-----V A LILNTNSAV- Site 305
H_sapiens_3 YGLI-----V A LILSTK---- Site 305
G_zeae_16 FGLI-----I G LLVSSKAPA- Site 305
Y_lipolytica_11 YGMI-----I A LILNTKGS-- Site 305
M_brevicollis_3 YGLI-----V A LILNTKASK- Site 305
D_discoideum_3 YGLI-----I G ILLSSVSDT- Site 305
P_stipitis_16 FGLI-----V G LLMAGKAQE- Site 305
C_albicans_16 FGLI-----V G LLMTGKAQE- Site 305
C_albicans_11 YGMI-----I A LILNTKGS-- Site 305
P_stipitis_11 YGMI-----I A LILNTKGS-- Site 305
X_laevis_3 YGLI-----V A LILSTK---- Site 305
C_glabrata_11 YGMI-----I A LILNTKGS-- Site 305
E_caballus_16 FGVI-----V A ILQTSRVKM- Site 305
C_glabrata_16 LGLI-----V G LLMAGKAAD- Site 305
V_polyspora_11 YGMI-----V A LILNTKGS-- Site 305
V_polyspora_16 LGLI-----V G LLMTEKAAE- Site 305
C_hominis_16 FGMI-----V G FYQLSLADF- Site 305
Species Residue at Site 355
in 'msaprobs'
muscle

The residue for every species at site 355 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

C_globosum_11 YGLI-----V A LILNTKSK-- Site 305
C_globosum_16 FGLI-----V G LLVSNKAPD- Site 305
O_mordax_16 FGVI-----V A ILQTSKVKM- Site 305
D_rerio_16 FGVI-----V A ILQTSKVKM- Site 305
B_bovis_3 YGLI-----V G LIVALKPVA- Site 305
B_floridae_16 FGVI-----I G IIQTSRVSM- Site 305
M_musculus_3 YGLI-----V A LILSTK---- Site 305
A_fumigatus_16 FGLI-----I G LLVGGKATD- Site 305
C_familiaris_16 FGVI-----V A ILQTSRVKM- Site 305
K_lactis_11 YGMI-----V A LILNTRGS-- Site 305
K_lactis_16 LGLI-----V G LLMAGKAVE- Site 305
B_taurus_16 FGVI-----V A ILQTSRVKM- Site 305
S_sclerotiorum_16 FGLI-----I G LLVSSKAPD- Site 305
S_sclerotiorum_11 YGLI-----V A LILNTKSR-- Site 305
R_norvegicus_16 FGVI-----V A ILQTSRVKM- Site 305

Generated by PhyloBot at 14:27, October 27th 2020
Questions/Comments? help@phylobot.com