V-ATPase Ancestral Library

If you use these results in your work, please cite: Hanson-Smith and Johnson, PLoS Comp. Bio., 2016


Overview | Alignments | Sites | Trees | Ancestors | Mutations


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Select a Site:

Site 337 in Alignment 'msaprobs'


Similarity to Other Alignments

What percentage of the residues at this site are inferred to be a single site (i.e. homologous) in the alignments produced by other methods? A value of 100% indicates that the existence of site 337 is robust across multiple methods. Values less than 100% indicate that other alignment methods made different homology inferences.

Similarity of Site 337 in 'msaprobs'
to Sites in 'muscle'

What percentage of the residues at this site in msaprobs are inferred to be a single site (i.e. homologous) in the alignments produced by muscle? A value of 100% indicates that the existence of site 337 is reproduced using the muscle method. Values less than 100% indicate that muscle made different homology inferences for the residues at this site.


Species Residue at Site 337
in 'msaprobs'
muscle

The residue for every species at site 337 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

M_musculus_16 ----KILIVE I FGSAIGLFGV Site 286
O_mordax_3 ----GMILIL I FAEVLGLYGL Site 286
D_rerio_3 ----GMILIL I FAEVLGLYGL Site 286
M_grisea_16 ----KILVIE I FSSILGLFGL Site 286
M_grisea_11 ----GMVLIL I FGEVLGLYGL Site 286
A_niger_3 ----GMILIL I FAEVLGLYGL Site 286
C_glabrata_3 ----GMILIL I FSEVLGLYGL Site 286
A_terreus_11 LNREKVFDFV W YPNMLAICSF Site 287
A_terreus_16 ----KILVIE I FSSVLGLFGL Site 286
C_parvum_16 ----KMLVVE I FAGALGLFGM Site 286
T_adhaerens_3 ----GMILIL I FAEVLGLYGL Site 286
T_castaneum_3 ----GMILIL I FAEVLGLYGL Site 286
X_tropicalis_3 ----GMILIL I FAEVLGLYGL Site 286
G_zeae_3 ----GMILIL I FAEVLGLYGL Site 286
L_elongisporus_3 ----GMILIL I FAEVLGLYGL Site 286
A_fumigatus_3 ----GMILIL I FAEVLGLYGL Site 286
M_grisea_3 ----GMILIL I FAEVLGLYGL Site 286
S_pombe_3 ----AMILIL I FAEVLGLYGL Site 286
C_albicans_3 ----GIVLIL I FAEVLGLYGM Site 286
B_bovis_16 ----KILMVE I FAGIIGLFGV Site 286
C_muris_3 ----GMILIL I FGEALAIYGL Site 286
S_purpuratus_3 ----GMIIIL I FAEVLGLYGL Site 286
C_immitis_16 ----KILVIE I FSSILGLFGL Site 286
M_mulatta_16 ----KILIVE I FGSAIGLFGV Site 286
Y_lipolytica_3 ----GMILIL I FAEVLGLYGL Site 286
Species Residue at Site 337
in 'msaprobs'
muscle

The residue for every species at site 337 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

B_fuckeliana_16 ----KILVIE I FSSVLGLFGL Site 286
C_immitis_11 ----GMVLIL I FGEVLGLYGL Site 286
A_mellifera_16 ----KILIVE I FGSAIGLFGL Site 286
A_gossypii_11 ----GIVLIL I FAEVLGLYGM Site 286
T_annulata_16 ----KVLMVE I FASVLGLFGV Site 286
N_vectensis_3 ----GMILIL I FAEVLGLYGL Site 286
S_Salar_16 ----KILIVE I FGSAIGLFGV Site 286
L_elongisporus_16 ----KILVVE I FGSVLGLFGL Site 286
C_neoformans_16 ----KILIVE I FGSVLGLFGL Site 286
C_neoformans_11 ----SMVLIL I FAEVIGLYGL Site 286
P_knowlesi_16 ----RMLMIE I CASVIGLYGL Site 286
A_terreus_3 ----GMILIL I FAEVLGLYGL Site 286
A_pisum_3 ----GMILIL I FAEVLGLYGL Site 286
S_Salar_3 ----GMILIL I FAEVLGLYGL Site 286
P_marneffei_3 ----GMILIL I FAEVLGLYGL Site 286
P_stipitis_3 ----GMILIL I FAEVLGLYGL Site 286
A_fumigatus_11 ----GMILIL I FGEVLGLYGL Site 286
A_gossypii_3 ----GMILIL I FAEVLGLYGL Site 286
C_hominis_3 ----ASMLIL I FGEALAIYGI Site 286
C_muris_16 ----KMLVVE I FASALSLFGM Site 286
X_laevis_16 ----KILIVE I FGSAIGLFGV Site 286
M_mulatta_3 ----GMILTL I FAEVLGLYGL Site 286
M_brevicollis_16 ----KILIVE I FGSAIGLFGI Site 286
K_lactis_3 ----GMILIL I FAEVLGLYGL Site 286
T_castaneum_16 ----KILIVE I FGSAIGLFGL Site 286
Species Residue at Site 337
in 'msaprobs'
muscle

The residue for every species at site 337 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

C_intestinalis_16 ----KVLIVE I FGSAIGLFGL Site 286
E_caballus_3 ----GMILIL I FAEVLGLYGL Site 286
C_globosum_3 ----GMILIL I FAEVLGLYGL Site 286
A_clavatus_3 ----GMILIL I FAEVLGLYGL Site 286
N_crassa_11 ----GMVLIL I FGEVLGLYGL Site 286
N_crassa_16 ----KILVIE I FSSVLGLFGL Site 286
X_tropicalis_16 ----KILIVE I FGSAIGLFGV Site 286
P_anserina_11 ----GMVLIL I FGEVLGLYGL Site 286
P_vivax_16 ----RMLMIE I CASVIGLYGL Site 286
P_anserina_16 ----KILVIE I FSSVLGLFGL Site 286
H_sapiens_16 ----KILIVE I FGSAIGLFGV Site 286
T_annulata_3 ----GMVLTL V FAETLALYGL Site 286
C_intestinalis_3 ----GMILIL I FAEVLGLYGL Site 286
L_elongisporus_11 ----GIVLIL I FAEVLGLYGM Site 286
A_gossypii_16 ----KILVIE I FGSVLGLLGL Site 286
A_pisum_16 ----KILIVE I FGSAIGLFGL Site 286
N_crassa_3 ----GMILIL I FAEVLGLYGL Site 286
V_polyspora_3 ----GMILIL I FAEVLGLYGL Site 286
S_cerevisiae_3 ----GMILIL I FAEVLGLYGL Site 286
P_marneffei_16 ----KILVIE I FSSVLGLFGL Site 286
D_hansenii_3 ----GMILIL I FAEVLGLYGL Site 286
S_pombe_11 ----SMVLIL I FAEVLGLYGL Site 286
T_guttata_3 ----GMILIL I FAEVLGLYGL Site 286
S_pombe_16 ----KVLVVE I FGSVLGLFGL Site 286
B_fuckeliana_3 ----GMILIL I FAEVLGLYGL Site 286
Species Residue at Site 337
in 'msaprobs'
muscle

The residue for every species at site 337 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

T_adhaerens_16 ----KVLIVE I FGSAIGLFGV Site 286
S_cerevisiae_16 ----KILVIE I FGSILGLLGL Site 286
R_norvegicus_3 ----GMILIL I FAEVLGLYGL Site 286
S_cerevisiae_11 ----GIVLIL I FSEVLGLYGM Site 286
B_taurus_3 ----GMILIL I FAEVLGLYGL Site 286
C_familiaris_3 ----GMILIL I FAEVLGLYGL Site 286
P_anserina_3 ----GMILIL I FAEVLGLYGL Site 286
P_marneffei_11 ----GMILIL I FGEVLGLYGL Site 286
P_knowlesi_3 ----GMILIL V FSETLALYGL Site 286
T_guttata_16 ----KILIVE I FGSAIGLFGV Site 286
B_fuckeliana_11 ----GMVLIL I FGEVLGLYG- Site 286
C_cinerea_okayama_3 ----GMILIL I FSEVLGLYGL Site 286
P_falciparum_16 ----RMLMIE I CASVIGLYGL Site 286
N_vectensis_16 ----KILIVE I FGSAIGLFGV Site 286
A_niger_11 ----GMILIL I FGEVLGLYGL Site 286
A_niger_16 ----KILVIE I FSSVLGLFGL Site 286
C_parvum_3 ----GMILIL V FGEALAIYGV Site 286
S_purpuratus_16 ----KVLIVE I FGSAIGLFGV Site 286
B_floridae_3 ----GMVLIL I FAEVLGLYGL Site 286
Y_lipolytica_16 ----KILVIE I FGSVLGLFGL Site 286
A_mellifera_3 ----GMILIL I FAEVLGLYGL Site 286
A_clavatus_16 ----KILVIE I FSSVLGLFGL Site 286
A_clavatus_11 ----GMILIL I FGEVLGLYGL Site 286
S_sclerotiorum_3 ----GMILIL I FAEVLGLYGL Site 286
P_falciparum_3 ----GMILIL V FSETLALYGL Site 286
Species Residue at Site 337
in 'msaprobs'
muscle

The residue for every species at site 337 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

D_discoideum_16 ----KMLIIE I FAGALGLYAV Site 286
C_cinerea_okayama_11 ----GMVLIL I FAEVLGLYGL Site 286
D_hansenii_16 ----KILVIE I FGSVLGLFGL Site 286
D_hansenii_11 ----GIVLIL I FAEVLGLYGM Site 286
C_cinerea_okayama_16 ----KILVVE V FGSILGLFGL Site 286
P_vivax_3 ----GMILIL V FSETLALYGL Site 286
C_immitis_3 ----GMILIL I FAEVLGLYGL Site 286
G_zeae_11 ----GMVLIL I FGEVLGLYGL Site 286
C_neoformans_3 ----GMILIL I FAEVLGLYGL Site 286
H_sapiens_3 ----GMILIL I FAEVLGLYGL Site 286
G_zeae_16 ----KILVIE I FSSVLGLFGL Site 286
Y_lipolytica_11 ----GIVLIL I FAEVLGLYGM Site 286
M_brevicollis_3 ----GMILIL I FAEVLGLYGL Site 286
D_discoideum_3 ----IMMLIL I FSEALGLYGL Site 286
P_stipitis_16 ----KILVIE I FGSVLGLFGL Site 286
C_albicans_16 ----KILVVE I FGSVLGLFGL Site 286
C_albicans_11 ----GIVLIL I FAEVLGLYGM Site 286
P_stipitis_11 ----GIVLIL I FAEVLGLYGM Site 286
X_laevis_3 ----GMILIL I FAEVLGLYGL Site 286
C_glabrata_11 ----GIVLIL I FSEVLGLYGM Site 286
E_caballus_16 ----KILIVE I FGSAIGLFGV Site 286
C_glabrata_16 ----KILVIE I FGSILGLLGL Site 286
V_polyspora_11 ----GIVLIL I FSEVLGLYGM Site 286
V_polyspora_16 ----KILVIE I FGSILGLLGL Site 286
C_hominis_16 ----KMLVVE I FAGALGLFGM Site 286
Species Residue at Site 337
in 'msaprobs'
muscle

The residue for every species at site 337 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

C_globosum_11 ----GMVLIL I FGEVLGLYGL Site 286
C_globosum_16 ----KMLVIE I FSSVLGLFGL Site 286
O_mordax_16 ----KILIVE I FGSAIGLFGV Site 286
D_rerio_16 ----RILIVE I FGSAIGLFGV Site 286
B_bovis_3 ----GMVLTL V FAETLALYGL Site 286
B_floridae_16 ----KILIVE I FASVIGLFGV Site 286
M_musculus_3 ----GMILIL I FAEVLGLYGL Site 286
A_fumigatus_16 ----KILVIE I FSSVLGLFGL Site 286
C_familiaris_16 ----KILIVE I FGSAIGLFGV Site 286
K_lactis_11 ----GIVLIL I FSEVLGLYGM Site 286
K_lactis_16 ----KILVIE I FGSVLGLLGL Site 286
B_taurus_16 ----KILIVE I FGSAIGLFGV Site 286
S_sclerotiorum_16 ----KILVIE I FSSVLGLFGL Site 286
S_sclerotiorum_11 ----GMVLIL I FGEVLGLYGL Site 286
R_norvegicus_16 ----KILIVE I FGSAIGLFGV Site 286

Generated by PhyloBot at 14:59, October 27th 2020
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