V-ATPase Ancestral Library

If you use these results in your work, please cite: Hanson-Smith and Johnson, PLoS Comp. Bio., 2016


Overview | Alignments | Sites | Trees | Ancestors | Mutations


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Select a Site:

Site 335 in Alignment 'msaprobs'


Similarity to Other Alignments

What percentage of the residues at this site are inferred to be a single site (i.e. homologous) in the alignments produced by other methods? A value of 100% indicates that the existence of site 335 is robust across multiple methods. Values less than 100% indicate that other alignment methods made different homology inferences.

Similarity of Site 335 in 'msaprobs'
to Sites in 'muscle'

What percentage of the residues at this site in msaprobs are inferred to be a single site (i.e. homologous) in the alignments produced by muscle? A value of 100% indicates that the existence of site 335 is reproduced using the muscle method. Values less than 100% indicate that muscle made different homology inferences for the residues at this site.


Species Residue at Site 335
in 'msaprobs'
muscle

The residue for every species at site 335 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

M_musculus_16 ------KILI V EIFGSAIGLF Site 284
O_mordax_3 ------GMIL I LIFAEVLGLY Site 284
D_rerio_3 ------GMIL I LIFAEVLGLY Site 284
M_grisea_16 ------KILV I EIFSSILGLF Site 284
M_grisea_11 ------GMVL I LIFGEVLGLY Site 284
A_niger_3 ------GMIL I LIFAEVLGLY Site 284
C_glabrata_3 ------GMIL I LIFSEVLGLY Site 284
A_terreus_11 SPLNREKVFD F VWYPNMLAIC Site 285
A_terreus_16 ------KILV I EIFSSVLGLF Site 284
C_parvum_16 ------KMLV V EIFAGALGLF Site 284
T_adhaerens_3 ------GMIL I LIFAEVLGLY Site 284
T_castaneum_3 ------GMIL I LIFAEVLGLY Site 284
X_tropicalis_3 ------GMIL I LIFAEVLGLY Site 284
G_zeae_3 ------GMIL I LIFAEVLGLY Site 284
L_elongisporus_3 ------GMIL I LIFAEVLGLY Site 284
A_fumigatus_3 ------GMIL I LIFAEVLGLY Site 284
M_grisea_3 ------GMIL I LIFAEVLGLY Site 284
S_pombe_3 ------AMIL I LIFAEVLGLY Site 284
C_albicans_3 ------GIVL I LIFAEVLGLY Site 284
B_bovis_16 ------KILM V EIFAGIIGLF Site 284
C_muris_3 ------GMIL I LIFGEALAIY Site 284
S_purpuratus_3 ------GMII I LIFAEVLGLY Site 284
C_immitis_16 ------KILV I EIFSSILGLF Site 284
M_mulatta_16 ------KILI V EIFGSAIGLF Site 284
Y_lipolytica_3 ------GMIL I LIFAEVLGLY Site 284
Species Residue at Site 335
in 'msaprobs'
muscle

The residue for every species at site 335 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

B_fuckeliana_16 ------KILV I EIFSSVLGLF Site 284
C_immitis_11 ------GMVL I LIFGEVLGLY Site 284
A_mellifera_16 ------KILI V EIFGSAIGLF Site 284
A_gossypii_11 ------GIVL I LIFAEVLGLY Site 284
T_annulata_16 ------KVLM V EIFASVLGLF Site 284
N_vectensis_3 ------GMIL I LIFAEVLGLY Site 284
S_Salar_16 ------KILI V EIFGSAIGLF Site 284
L_elongisporus_16 ------KILV V EIFGSVLGLF Site 284
C_neoformans_16 ------KILI V EIFGSVLGLF Site 284
C_neoformans_11 ------SMVL I LIFAEVIGLY Site 284
P_knowlesi_16 ------RMLM I EICASVIGLY Site 284
A_terreus_3 ------GMIL I LIFAEVLGLY Site 284
A_pisum_3 ------GMIL I LIFAEVLGLY Site 284
S_Salar_3 ------GMIL I LIFAEVLGLY Site 284
P_marneffei_3 ------GMIL I LIFAEVLGLY Site 284
P_stipitis_3 ------GMIL I LIFAEVLGLY Site 284
A_fumigatus_11 ------GMIL I LIFGEVLGLY Site 284
A_gossypii_3 ------GMIL I LIFAEVLGLY Site 284
C_hominis_3 ------ASML I LIFGEALAIY Site 284
C_muris_16 ------KMLV V EIFASALSLF Site 284
X_laevis_16 ------KILI V EIFGSAIGLF Site 284
M_mulatta_3 ------GMIL T LIFAEVLGLY Site 284
M_brevicollis_16 ------KILI V EIFGSAIGLF Site 284
K_lactis_3 ------GMIL I LIFAEVLGLY Site 284
T_castaneum_16 ------KILI V EIFGSAIGLF Site 284
Species Residue at Site 335
in 'msaprobs'
muscle

The residue for every species at site 335 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

C_intestinalis_16 ------KVLI V EIFGSAIGLF Site 284
E_caballus_3 ------GMIL I LIFAEVLGLY Site 284
C_globosum_3 ------GMIL I LIFAEVLGLY Site 284
A_clavatus_3 ------GMIL I LIFAEVLGLY Site 284
N_crassa_11 ------GMVL I LIFGEVLGLY Site 284
N_crassa_16 ------KILV I EIFSSVLGLF Site 284
X_tropicalis_16 ------KILI V EIFGSAIGLF Site 284
P_anserina_11 ------GMVL I LIFGEVLGLY Site 284
P_vivax_16 ------RMLM I EICASVIGLY Site 284
P_anserina_16 ------KILV I EIFSSVLGLF Site 284
H_sapiens_16 ------KILI V EIFGSAIGLF Site 284
T_annulata_3 ------GMVL T LVFAETLALY Site 284
C_intestinalis_3 ------GMIL I LIFAEVLGLY Site 284
L_elongisporus_11 ------GIVL I LIFAEVLGLY Site 284
A_gossypii_16 ------KILV I EIFGSVLGLL Site 284
A_pisum_16 ------KILI V EIFGSAIGLF Site 284
N_crassa_3 ------GMIL I LIFAEVLGLY Site 284
V_polyspora_3 ------GMIL I LIFAEVLGLY Site 284
S_cerevisiae_3 ------GMIL I LIFAEVLGLY Site 284
P_marneffei_16 ------KILV I EIFSSVLGLF Site 284
D_hansenii_3 ------GMIL I LIFAEVLGLY Site 284
S_pombe_11 ------SMVL I LIFAEVLGLY Site 284
T_guttata_3 ------GMIL I LIFAEVLGLY Site 284
S_pombe_16 ------KVLV V EIFGSVLGLF Site 284
B_fuckeliana_3 ------GMIL I LIFAEVLGLY Site 284
Species Residue at Site 335
in 'msaprobs'
muscle

The residue for every species at site 335 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

T_adhaerens_16 ------KVLI V EIFGSAIGLF Site 284
S_cerevisiae_16 ------KILV I EIFGSILGLL Site 284
R_norvegicus_3 ------GMIL I LIFAEVLGLY Site 284
S_cerevisiae_11 ------GIVL I LIFSEVLGLY Site 284
B_taurus_3 ------GMIL I LIFAEVLGLY Site 284
C_familiaris_3 ------GMIL I LIFAEVLGLY Site 284
P_anserina_3 ------GMIL I LIFAEVLGLY Site 284
P_marneffei_11 ------GMIL I LIFGEVLGLY Site 284
P_knowlesi_3 ------GMIL I LVFSETLALY Site 284
T_guttata_16 ------KILI V EIFGSAIGLF Site 284
B_fuckeliana_11 ------GMVL I LIFGEVLGLY Site 284
C_cinerea_okayama_3 ------GMIL I LIFSEVLGLY Site 284
P_falciparum_16 ------RMLM I EICASVIGLY Site 284
N_vectensis_16 ------KILI V EIFGSAIGLF Site 284
A_niger_11 ------GMIL I LIFGEVLGLY Site 284
A_niger_16 ------KILV I EIFSSVLGLF Site 284
C_parvum_3 ------GMIL I LVFGEALAIY Site 284
S_purpuratus_16 ------KVLI V EIFGSAIGLF Site 284
B_floridae_3 ------GMVL I LIFAEVLGLY Site 284
Y_lipolytica_16 ------KILV I EIFGSVLGLF Site 284
A_mellifera_3 ------GMIL I LIFAEVLGLY Site 284
A_clavatus_16 ------KILV I EIFSSVLGLF Site 284
A_clavatus_11 ------GMIL I LIFGEVLGLY Site 284
S_sclerotiorum_3 ------GMIL I LIFAEVLGLY Site 284
P_falciparum_3 ------GMIL I LVFSETLALY Site 284
Species Residue at Site 335
in 'msaprobs'
muscle

The residue for every species at site 335 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

D_discoideum_16 ------KMLI I EIFAGALGLY Site 284
C_cinerea_okayama_11 ------GMVL I LIFAEVLGLY Site 284
D_hansenii_16 ------KILV I EIFGSVLGLF Site 284
D_hansenii_11 ------GIVL I LIFAEVLGLY Site 284
C_cinerea_okayama_16 ------KILV V EVFGSILGLF Site 284
P_vivax_3 ------GMIL I LVFSETLALY Site 284
C_immitis_3 ------GMIL I LIFAEVLGLY Site 284
G_zeae_11 ------GMVL I LIFGEVLGLY Site 284
C_neoformans_3 ------GMIL I LIFAEVLGLY Site 284
H_sapiens_3 ------GMIL I LIFAEVLGLY Site 284
G_zeae_16 ------KILV I EIFSSVLGLF Site 284
Y_lipolytica_11 ------GIVL I LIFAEVLGLY Site 284
M_brevicollis_3 ------GMIL I LIFAEVLGLY Site 284
D_discoideum_3 ------IMML I LIFSEALGLY Site 284
P_stipitis_16 ------KILV I EIFGSVLGLF Site 284
C_albicans_16 ------KILV V EIFGSVLGLF Site 284
C_albicans_11 ------GIVL I LIFAEVLGLY Site 284
P_stipitis_11 ------GIVL I LIFAEVLGLY Site 284
X_laevis_3 ------GMIL I LIFAEVLGLY Site 284
C_glabrata_11 ------GIVL I LIFSEVLGLY Site 284
E_caballus_16 ------KILI V EIFGSAIGLF Site 284
C_glabrata_16 ------KILV I EIFGSILGLL Site 284
V_polyspora_11 ------GIVL I LIFSEVLGLY Site 284
V_polyspora_16 ------KILV I EIFGSILGLL Site 284
C_hominis_16 ------KMLV V EIFAGALGLF Site 284
Species Residue at Site 335
in 'msaprobs'
muscle

The residue for every species at site 335 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

C_globosum_11 ------GMVL I LIFGEVLGLY Site 284
C_globosum_16 ------KMLV I EIFSSVLGLF Site 284
O_mordax_16 ------KILI V EIFGSAIGLF Site 284
D_rerio_16 ------RILI V EIFGSAIGLF Site 284
B_bovis_3 ------GMVL T LVFAETLALY Site 284
B_floridae_16 ------KILI V EIFASVIGLF Site 284
M_musculus_3 ------GMIL I LIFAEVLGLY Site 284
A_fumigatus_16 ------KILV I EIFSSVLGLF Site 284
C_familiaris_16 ------KILI V EIFGSAIGLF Site 284
K_lactis_11 ------GIVL I LIFSEVLGLY Site 284
K_lactis_16 ------KILV I EIFGSVLGLL Site 284
B_taurus_16 ------KILI V EIFGSAIGLF Site 284
S_sclerotiorum_16 ------KILV I EIFSSVLGLF Site 284
S_sclerotiorum_11 ------GMVL I LIFGEVLGLY Site 284
R_norvegicus_16 ------KILI V EIFGSAIGLF Site 284

Generated by PhyloBot at 17:29, October 30th 2020
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