V-ATPase Ancestral Library

If you use these results in your work, please cite: Hanson-Smith and Johnson, PLoS Comp. Bio., 2016


Overview | Alignments | Sites | Trees | Ancestors | Mutations


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Select a Site:

Site 333 in Alignment 'msaprobs'


Similarity to Other Alignments

What percentage of the residues at this site are inferred to be a single site (i.e. homologous) in the alignments produced by other methods? A value of 100% indicates that the existence of site 333 is robust across multiple methods. Values less than 100% indicate that other alignment methods made different homology inferences.

Similarity of Site 333 in 'msaprobs'
to Sites in 'muscle'

What percentage of the residues at this site in msaprobs are inferred to be a single site (i.e. homologous) in the alignments produced by muscle? A value of 100% indicates that the existence of site 333 is reproduced using the muscle method. Values less than 100% indicate that muscle made different homology inferences for the residues at this site.


Species Residue at Site 333
in 'msaprobs'
muscle

The residue for every species at site 333 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

M_musculus_16 FV------KI L IVEIFGSAIG Site 282
O_mordax_3 FV------GM I LILIFAEVLG Site 282
D_rerio_3 FV------GM I LILIFAEVLG Site 282
M_grisea_16 FV------KI L VIEIFSSILG Site 282
M_grisea_11 FV------GM V LILIFGEVLG Site 282
A_niger_3 YV------GM I LILIFAEVLG Site 282
C_glabrata_3 FV------GM I LILIFSEVLG Site 282
A_terreus_11 EKSPLNREKV F DFVWYPNMLA Site 283
A_terreus_16 FV------KI L VIEIFSSVLG Site 282
C_parvum_16 FS------KM L VVEIFAGALG Site 282
T_adhaerens_3 FV------GM I LILIFAEVLG Site 282
T_castaneum_3 FV------GM I LILIFAEVLG Site 282
X_tropicalis_3 FV------GM I LILIFAEVLG Site 282
G_zeae_3 FV------GM I LILIFAEVLG Site 282
L_elongisporus_3 FV------GM I LILIFAEVLG Site 282
A_fumigatus_3 YV------GM I LILIFAEVLG Site 282
M_grisea_3 FV------GM I LILIFAEVLG Site 282
S_pombe_3 FV------AM I LILIFAEVLG Site 282
C_albicans_3 FV------GI V LILIFAEVLG Site 282
B_bovis_16 FV------KI L MVEIFAGIIG Site 282
C_muris_3 LT------GM I LILIFGEALA Site 282
S_purpuratus_3 FV------GM I IILIFAEVLG Site 282
C_immitis_16 FV------KI L VIEIFSSILG Site 282
M_mulatta_16 FV------KI L IVEIFGSAIG Site 282
Y_lipolytica_3 FV------GM I LILIFAEVLG Site 282
Species Residue at Site 333
in 'msaprobs'
muscle

The residue for every species at site 333 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

B_fuckeliana_16 FV------KI L VIEIFSSVLG Site 282
C_immitis_11 FV------GM V LILIFGEVLG Site 282
A_mellifera_16 FV------KI L IVEIFGSAIG Site 282
A_gossypii_11 FV------GI V LILIFAEVLG Site 282
T_annulata_16 FV------KV L MVEIFASVLG Site 282
N_vectensis_3 FV------GM I LILIFAEVLG Site 282
S_Salar_16 FV------KI L IVEIFGSAIG Site 282
L_elongisporus_16 FV------KI L VVEIFGSVLG Site 282
C_neoformans_16 FV------KI L IVEIFGSVLG Site 282
C_neoformans_11 FV------SM V LILIFAEVIG Site 282
P_knowlesi_16 FV------RM L MIEICASVIG Site 282
A_terreus_3 YV------GM I LILIFAEVLG Site 282
A_pisum_3 FV------GM I LILIFAEVLG Site 282
S_Salar_3 FV------GM I LILIFAEVLG Site 282
P_marneffei_3 YV------GM I LILIFAEVLG Site 282
P_stipitis_3 FV------GM I LILIFAEVLG Site 282
A_fumigatus_11 YV------GM I LILIFGEVLG Site 282
A_gossypii_3 FV------GM I LILIFAEVLG Site 282
C_hominis_3 FV------AS M LILIFGEALA Site 282
C_muris_16 FP------KM L VVEIFASALS Site 282
X_laevis_16 FV------KI L IVEIFGSAIG Site 282
M_mulatta_3 FM------GM I LTLIFAEVLG Site 282
M_brevicollis_16 FV------KI L IVEIFGSAIG Site 282
K_lactis_3 FV------GM I LILIFAEVLG Site 282
T_castaneum_16 FV------KI L IVEIFGSAIG Site 282
Species Residue at Site 333
in 'msaprobs'
muscle

The residue for every species at site 333 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

C_intestinalis_16 FV------KV L IVEIFGSAIG Site 282
E_caballus_3 FV------GM I LILIFAEVLG Site 282
C_globosum_3 FV------GM I LILIFAEVLG Site 282
A_clavatus_3 YV------GM I LILIFAEVLG Site 282
N_crassa_11 FV------GM V LILIFGEVLG Site 282
N_crassa_16 FV------KI L VIEIFSSVLG Site 282
X_tropicalis_16 FV------KI L IVEIFGSAIG Site 282
P_anserina_11 FV------GM V LILIFGEVLG Site 282
P_vivax_16 FV------RM L MIEICASVIG Site 282
P_anserina_16 FV------KI L VIEIFSSVLG Site 282
H_sapiens_16 FV------KI L IVEIFGSAIG Site 282
T_annulata_3 FV------GM V LTLVFAETLA Site 282
C_intestinalis_3 FV------GM I LILIFAEVLG Site 282
L_elongisporus_11 FV------GI V LILIFAEVLG Site 282
A_gossypii_16 FV------KI L VIEIFGSVLG Site 282
A_pisum_16 FV------KI L IVEIFGSAIG Site 282
N_crassa_3 FV------GM I LILIFAEVLG Site 282
V_polyspora_3 FV------GM I LILIFAEVLG Site 282
S_cerevisiae_3 FV------GM I LILIFAEVLG Site 282
P_marneffei_16 FV------KI L VIEIFSSVLG Site 282
D_hansenii_3 FV------GM I LILIFAEVLG Site 282
S_pombe_11 FV------SM V LILIFAEVLG Site 282
T_guttata_3 FV------GM I LILIFAEVLG Site 282
S_pombe_16 FV------KV L VVEIFGSVLG Site 282
B_fuckeliana_3 FV------GM I LILIFAEVLG Site 282
Species Residue at Site 333
in 'msaprobs'
muscle

The residue for every species at site 333 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

T_adhaerens_16 FV------KV L IVEIFGSAIG Site 282
S_cerevisiae_16 FV------KI L VIEIFGSILG Site 282
R_norvegicus_3 FV------GM I LILIFAEVLG Site 282
S_cerevisiae_11 FV------GI V LILIFSEVLG Site 282
B_taurus_3 FV------GM I LILIFAEVLG Site 282
C_familiaris_3 FV------GM I LILIFAEVLG Site 282
P_anserina_3 FV------GM I LILIFAEVLG Site 282
P_marneffei_11 YV------GM I LILIFGEVLG Site 282
P_knowlesi_3 FI------GM I LILVFSETLA Site 282
T_guttata_16 FV------KI L IVEIFGSAIG Site 282
B_fuckeliana_11 FV------GM V LILIFGEVLG Site 282
C_cinerea_okayama_3 FV------GM I LILIFSEVLG Site 282
P_falciparum_16 FV------RM L MIEICASVIG Site 282
N_vectensis_16 FV------KI L IVEIFGSAIG Site 282
A_niger_11 YV------GM I LILIFGEVLG Site 282
A_niger_16 FV------KI L VIEIFSSVLG Site 282
C_parvum_3 LT------GM I LILVFGEALA Site 282
S_purpuratus_16 FV------KV L IVEIFGSAIG Site 282
B_floridae_3 FV------GM V LILIFAEVLG Site 282
Y_lipolytica_16 FV------KI L VIEIFGSVLG Site 282
A_mellifera_3 FV------GM I LILIFAEVLG Site 282
A_clavatus_16 FV------KI L VIEIFSSVLG Site 282
A_clavatus_11 YV------GM I LILIFGEVLG Site 282
S_sclerotiorum_3 FV------GM I LILIFAEVLG Site 282
P_falciparum_3 FI------GM I LILVFSETLA Site 282
Species Residue at Site 333
in 'msaprobs'
muscle

The residue for every species at site 333 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

D_discoideum_16 FV------KM L IIEIFAGALG Site 282
C_cinerea_okayama_11 FV------GM V LILIFAEVLG Site 282
D_hansenii_16 FV------KI L VIEIFGSVLG Site 282
D_hansenii_11 FV------GI V LILIFAEVLG Site 282
C_cinerea_okayama_16 FV------KI L VVEVFGSILG Site 282
P_vivax_3 FI------GM I LILVFSETLA Site 282
C_immitis_3 FV------GM I LILIFAEVLG Site 282
G_zeae_11 FV------GM V LILIFGEVLG Site 282
C_neoformans_3 FV------GM I LILIFAEVLG Site 282
H_sapiens_3 FV------GM I LILIFAEVLG Site 282
G_zeae_16 FV------KI L VIEIFSSVLG Site 282
Y_lipolytica_11 FV------GI V LILIFAEVLG Site 282
M_brevicollis_3 FV------GM I LILIFAEVLG Site 282
D_discoideum_3 YV------IM M LILIFSEALG Site 282
P_stipitis_16 FV------KI L VIEIFGSVLG Site 282
C_albicans_16 FV------KI L VVEIFGSVLG Site 282
C_albicans_11 FV------GI V LILIFAEVLG Site 282
P_stipitis_11 FV------GI V LILIFAEVLG Site 282
X_laevis_3 FV------GM I LILIFAEVLG Site 282
C_glabrata_11 FV------GI V LILIFSEVLG Site 282
E_caballus_16 FV------KI L IVEIFGSAIG Site 282
C_glabrata_16 FV------KI L VIEIFGSILG Site 282
V_polyspora_11 FV------GI V LILIFSEVLG Site 282
V_polyspora_16 FV------KI L VIEIFGSILG Site 282
C_hominis_16 FS------KM L VVEIFAGALG Site 282
Species Residue at Site 333
in 'msaprobs'
muscle

The residue for every species at site 333 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

C_globosum_11 FV------GM V LILIFGEVLG Site 282
C_globosum_16 FV------KM L VIEIFSSVLG Site 282
O_mordax_16 FV------KI L IVEIFGSAIG Site 282
D_rerio_16 FV------RI L IVEIFGSAIG Site 282
B_bovis_3 FV------GM V LTLVFAETLA Site 282
B_floridae_16 FV------KI L IVEIFASVIG Site 282
M_musculus_3 FV------GM I LILIFAEVLG Site 282
A_fumigatus_16 FV------KI L VIEIFSSVLG Site 282
C_familiaris_16 FV------KI L IVEIFGSAIG Site 282
K_lactis_11 FV------GI V LILIFSEVLG Site 282
K_lactis_16 FV------KI L VIEIFGSVLG Site 282
B_taurus_16 FV------KI L IVEIFGSAIG Site 282
S_sclerotiorum_16 FV------KI L VIEIFSSVLG Site 282
S_sclerotiorum_11 FV------GM V LILIFGEVLG Site 282
R_norvegicus_16 FV------KI L IVEIFGSAIG Site 282

Generated by PhyloBot at 16:33, October 30th 2020
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