V-ATPase Ancestral Library

If you use these results in your work, please cite: Hanson-Smith and Johnson, PLoS Comp. Bio., 2016


Overview | Alignments | Sites | Trees | Ancestors | Mutations


Select an Alignment:

Select a Site:

Site 322 in Alignment 'msaprobs'


Similarity to Other Alignments

What percentage of the residues at this site are inferred to be a single site (i.e. homologous) in the alignments produced by other methods? A value of 100% indicates that the existence of site 322 is robust across multiple methods. Values less than 100% indicate that other alignment methods made different homology inferences.

Similarity of Site 322 in 'msaprobs'
to Sites in 'muscle'

What percentage of the residues at this site in msaprobs are inferred to be a single site (i.e. homologous) in the alignments produced by muscle? A value of 100% indicates that the existence of site 322 is reproduced using the muscle method. Values less than 100% indicate that muscle made different homology inferences for the residues at this site.


Species Residue at Site 322
in 'msaprobs'
muscle

The residue for every species at site 322 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

M_musculus_16 AALADAQNPS L FV------KI Site 277
O_mordax_3 GVRGTAQQPR L FV------GM Site 277
D_rerio_3 GVRGTAQQPR L FV------GM Site 277
M_grisea_16 AALADAADPT L FV------KI Site 277
M_grisea_11 GVRAYMEQSR I FV------GM Site 277
A_niger_3 GVRGTAQQPR L YV------GM Site 277
C_glabrata_3 GVRGTAQQPR L FV------GM Site 277
A_terreus_11 FDRR--SDPE L EKSPLNREKV Site 272
A_terreus_16 AALADAADAS L FV------KI Site 277
C_parvum_16 TALADAQRGE L FS------KM Site 277
T_adhaerens_3 GVRGTAQQPR L FV------GM Site 277
T_castaneum_3 GVRGTAQQPR L FV------GM Site 277
X_tropicalis_3 GVRGTAQQPR L FV------GM Site 277
G_zeae_3 GVRGTAQQPR L FV------GM Site 277
L_elongisporus_3 GVRGTAQQPR L FV------GM Site 277
A_fumigatus_3 GVRGTAQQPR L YV------GM Site 277
M_grisea_3 GVRGTAQQPR L FV------GM Site 277
S_pombe_3 GVRGTAQQPR L FV------AM Site 277
C_albicans_3 GVRQFMHQPR L FV------GI Site 277
B_bovis_16 CALADAQKPQ L FV------KI Site 277
C_muris_3 GVRAAAQQPR L LT------GM Site 277
S_purpuratus_3 GVRGTAQQPR L FV------GM Site 277
C_immitis_16 AALADASDPS L FV------KI Site 277
M_mulatta_16 AALADAQNPS L FV------KI Site 277
Y_lipolytica_3 GVRGTAQQPR L FV------GM Site 277
Species Residue at Site 322
in 'msaprobs'
muscle

The residue for every species at site 322 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

B_fuckeliana_16 AALADAADPS L FV------KI Site 277
C_immitis_11 GTRAFMQQSR V FV------GM Site 277
A_mellifera_16 AALSDAANSA L FV------KI Site 277
A_gossypii_11 GVRKFMHQPR L FV------GI Site 277
T_annulata_16 CALADAQKPQ L FV------KV Site 277
N_vectensis_3 GVRGTAQQPR L FV------GM Site 277
S_Salar_16 AALADAQNGS L FV------KI Site 277
L_elongisporus_16 AAISDAADSA L FV------KI Site 277
C_neoformans_16 AAVADAADPQ L FV------KI Site 277
C_neoformans_11 CVRAYLYESK V FV------SM Site 277
P_knowlesi_16 CALGDAHNSD L FV------RM Site 277
A_terreus_3 GVRGTAQQPR L YV------GM Site 277
A_pisum_3 GVRGTAQQPR L FV------GM Site 277
S_Salar_3 GVRGTAQQPR L FV------GM Site 277
P_marneffei_3 GVRGSAQQPR L YV------GM Site 277
P_stipitis_3 GVRGNAQQPR L FV------GM Site 277
A_fumigatus_11 GVRAYMQQSR V YV------GM Site 277
A_gossypii_3 GVRGNAQQPR L FV------GM Site 277
C_hominis_3 GIRGTAQQSK L FV------AS Site 277
C_muris_16 AALCDAQKAE L FP------KM Site 277
X_laevis_16 AALADAQNPS L FV------KI Site 277
M_mulatta_3 GVRATAQQPR L FM------GM Site 277
M_brevicollis_16 AALADAQNGA L FV------KI Site 277
K_lactis_3 GVRGTAQQPR L FV------GM Site 277
T_castaneum_16 AALADAANAA L FV------KI Site 277
Species Residue at Site 322
in 'msaprobs'
muscle

The residue for every species at site 322 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

C_intestinalis_16 AAIADAANPN L FV------KV Site 277
E_caballus_3 GVRGTAQQPR L FV------GM Site 277
C_globosum_3 GVRGTAQQPR L FV------GM Site 277
A_clavatus_3 GVRGTAQQPR L YV------GM Site 277
N_crassa_11 GVRSFMLQSR I FV------GM Site 277
N_crassa_16 AALADAADPT L FV------KI Site 277
X_tropicalis_16 AALADAQNPS L FV------KI Site 277
P_anserina_11 GVRSYMQQSR V FV------GM Site 277
P_vivax_16 CALGDAHNSD L FV------RM Site 277
P_anserina_16 AALADAADPT L FV------KI Site 277
H_sapiens_16 AALADAQNPS L FV------KI Site 277
T_annulata_3 GVRAHAQQTR L FV------GM Site 277
C_intestinalis_3 GVRGTAQQPK L FV------GM Site 277
L_elongisporus_11 GVRQFMHQPR L FV------GI Site 277
A_gossypii_16 AAVSDAANSA L FV------KI Site 277
A_pisum_16 AALADAANSS L FV------KI Site 277
N_crassa_3 GVRGTAQQPR L FV------GM Site 277
V_polyspora_3 GVRGTAQQPR L FV------GM Site 277
S_cerevisiae_3 GVRGSSQQPR L FV------GM Site 277
P_marneffei_16 AALADAADPS L FV------KI Site 277
D_hansenii_3 GVRGTAQQPR L FV------GM Site 277
S_pombe_11 GVQSFMRQDR I FV------SM Site 277
T_guttata_3 GVRGTAQQPR L FV------GM Site 277
S_pombe_16 AALADAQDAS L FV------KV Site 277
B_fuckeliana_3 GVRGTAQQPR L FV------GM Site 277
Species Residue at Site 322
in 'msaprobs'
muscle

The residue for every species at site 322 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

T_adhaerens_16 AALADAQNAS L FV------KV Site 277
S_cerevisiae_16 AAISDAADSA L FV------KI Site 277
R_norvegicus_3 GVRGTAQQPR L FV------GM Site 277
S_cerevisiae_11 GVRKYMHQPR L FV------GI Site 277
B_taurus_3 GVRGTAQQPR L FV------GM Site 277
C_familiaris_3 GVRGTAQQPR L FV------GM Site 277
P_anserina_3 GVRGTAQQPR L FV------GM Site 277
P_marneffei_11 GVRSYMQQSR V YV------GM Site 277
P_knowlesi_3 GVRANAQQNR L FI------GM Site 277
T_guttata_16 AALADAQNAS L FV------KI Site 277
B_fuckeliana_11 GVRSYMQQSR I FV------GM Site 277
C_cinerea_okayama_3 GVRGTAQQPR L FV------GM Site 277
P_falciparum_16 CAIGDAHSSD L FV------RM Site 277
N_vectensis_16 AALADAQNGA L FV------KI Site 277
A_niger_11 GVRAYMQQSR V YV------GM Site 277
A_niger_16 AALADAADPS L FV------KI Site 277
C_parvum_3 GVRAAAQQPR L LT------GM Site 277
S_purpuratus_16 AALADAQNAS L FV------KV Site 277
B_floridae_3 GVRGTAQQPR L FV------GM Site 277
Y_lipolytica_16 AAVADAADSA L FV------KI Site 277
A_mellifera_3 GVRGTAQQPR L FV------GM Site 277
A_clavatus_16 AALADAADPS L FV------KI Site 277
A_clavatus_11 GVRAYMQQSR V YV------GM Site 277
S_sclerotiorum_3 GVRGTAQQPR L FV------GM Site 277
P_falciparum_3 GVRANAQQNR L FI------GM Site 277
Species Residue at Site 322
in 'msaprobs'
muscle

The residue for every species at site 322 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

D_discoideum_16 CALGDAQNPS L FV------KM Site 277
C_cinerea_okayama_11 CVRAYVHESK I FV------GM Site 277
D_hansenii_16 AAISDAADSS L FV------KI Site 277
D_hansenii_11 GVRQFMHQPR L FV------GI Site 277
C_cinerea_okayama_16 AALGDAADPD L FV------KI Site 277
P_vivax_3 GVRANAQQNR L FI------GM Site 277
C_immitis_3 GVRGTAQQPR L FV------GM Site 277
G_zeae_11 GVRAYMEQSR I FV------GM Site 277
C_neoformans_3 GVRGTAQQPR L FV------GM Site 277
H_sapiens_3 GVRGTAQQPR L FV------GM Site 277
G_zeae_16 AALADAADPS L FV------KI Site 277
Y_lipolytica_11 GVRNFMLQPR L FV------GI Site 277
M_brevicollis_3 GVRGTAQQPK L FV------GM Site 277
D_discoideum_3 GVRAFGQQPK L YV------IM Site 277
P_stipitis_16 AAISDAADSS L FV------KI Site 277
C_albicans_16 AAISDAADSS L FV------KI Site 277
C_albicans_11 GVRQFMHQPR L FV------GI Site 277
P_stipitis_11 GVRQFMHQPK L FV------GI Site 277
X_laevis_3 GVRGTAQQPR L FV------GM Site 277
C_glabrata_11 GVRKYMHQPR L FV------GI Site 277
E_caballus_16 AALADAQNPS L FV------KI Site 277
C_glabrata_16 AAVADAADSS L FV------KI Site 277
V_polyspora_11 GVRKFMHQQR L FV------GI Site 277
V_polyspora_16 AAISDAADPT L FV------KI Site 277
C_hominis_16 TALADAQRGE L FS------KM Site 277
Species Residue at Site 322
in 'msaprobs'
muscle

The residue for every species at site 322 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

C_globosum_11 GVRAYMLQSR V FV------GM Site 277
C_globosum_16 AALADAADPT L FV------KM Site 277
O_mordax_16 AALADAQNAS L FV------KI Site 277
D_rerio_16 AALADAQNAN L FV------RI Site 277
B_bovis_3 GVRANAQQTR L FV------GM Site 277
B_floridae_16 AALADAQNAS L FV------KI Site 277
M_musculus_3 GVRGTAQQPR L FV------GM Site 277
A_fumigatus_16 AALADAADPS L FV------KI Site 277
C_familiaris_16 AALADAQNPS L FV------KI Site 277
K_lactis_11 GVRKYMHQPR L FV------GI Site 277
K_lactis_16 AAISDAADSS L FV------KI Site 277
B_taurus_16 AALADAQNPS L FV------KI Site 277
S_sclerotiorum_16 AALADAADPS L FV------KI Site 277
S_sclerotiorum_11 GVRSYMQQSR I FV------GM Site 277
R_norvegicus_16 AALADAQNPS L FV------KI Site 277

Generated by PhyloBot at 14:30, October 27th 2020
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