V-ATPase Ancestral Library

If you use these results in your work, please cite: Hanson-Smith and Johnson, PLoS Comp. Bio., 2016


Overview | Alignments | Sites | Trees | Ancestors | Mutations


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Select a Site:

Site 315 in Alignment 'msaprobs'


Similarity to Other Alignments

What percentage of the residues at this site are inferred to be a single site (i.e. homologous) in the alignments produced by other methods? A value of 100% indicates that the existence of site 315 is robust across multiple methods. Values less than 100% indicate that other alignment methods made different homology inferences.

Similarity of Site 315 in 'msaprobs'
to Sites in 'muscle'

What percentage of the residues at this site in msaprobs are inferred to be a single site (i.e. homologous) in the alignments produced by muscle? A value of 100% indicates that the existence of site 315 is reproduced using the muscle method. Values less than 100% indicate that muscle made different homology inferences for the residues at this site.


Species Residue at Site 315
in 'msaprobs'
muscle

The residue for every species at site 315 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

M_musculus_16 VGIVGSGAAL A DAQNPSLFV- Site 270
O_mordax_3 IGIVGDAGVR G TAQQPRLFV- Site 270
D_rerio_3 IGIVGDAGVR G TAQQPRLFV- Site 270
M_grisea_16 VGINGSGAAL A DAADPTLFV- Site 270
M_grisea_11 IGIVGDKGVR A YMEQSRIFV- Site 270
A_niger_3 IGIVGDAGVR G TAQQPRLYV- Site 270
C_glabrata_3 IGIVGDAGVR G TAQQPRLFV- Site 270
A_terreus_11 IGTVGDAFDR R --SDPELEKS Site 267
A_terreus_16 VGINGSGAAL A DAADASLFV- Site 270
C_parvum_16 VGITGSSTAL A DAQRGELFS- Site 270
T_adhaerens_3 IGIVGDAGVR G TAQQPRLFV- Site 270
T_castaneum_3 IGIVGDAGVR G TAQQPRLFV- Site 270
X_tropicalis_3 IGIVGDAGVR G TAQQPRLFV- Site 270
G_zeae_3 IGIVGDAGVR G TAQQPRLFV- Site 270
L_elongisporus_3 IGIVGDAGVR G TAQQPRLFV- Site 270
A_fumigatus_3 IGIVGDAGVR G TAQQPRLYV- Site 270
M_grisea_3 IGIVGDAGVR G TAQQPRLFV- Site 270
S_pombe_3 IGIVGDAGVR G TAQQPRLFV- Site 270
C_albicans_3 IGIVGDEGVR Q FMHQPRLFV- Site 270
B_bovis_16 VGAVGSACAL A DAQKPQLFV- Site 270
C_muris_3 IGIVGDAGVR A AAQQPRLLT- Site 270
S_purpuratus_3 IGIVGDAGVR G TAQQPRLFV- Site 270
C_immitis_16 VGINGSSAAL A DASDPSLFV- Site 270
M_mulatta_16 VGIVGSGAAL A DAQNPSLFV- Site 270
Y_lipolytica_3 IGIVGDAGVR G TAQQPRLFV- Site 270
Species Residue at Site 315
in 'msaprobs'
muscle

The residue for every species at site 315 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

B_fuckeliana_16 VGINGSGAAL A DAADPSLFV- Site 270
C_immitis_11 IGIVGDAGTR A FMQQSRVFV- Site 270
A_mellifera_16 VGIVGSGAAL S DAANSALFV- Site 270
A_gossypii_11 IGIVGDVGVR K FMHQPRLFV- Site 270
T_annulata_16 VGVVGSACAL A DAQKPQLFV- Site 270
N_vectensis_3 IGIVGDAGVR G TAQQPRLFV- Site 270
S_Salar_16 VGIVGSGAAL A DAQNGSLFV- Site 270
L_elongisporus_16 VGITGSTAAI S DAADSALFV- Site 270
C_neoformans_16 VGITGSTAAV A DAADPQLFV- Site 270
C_neoformans_11 IGIVGDACVR A YLYESKVFV- Site 270
P_knowlesi_16 VGITGSSCAL G DAHNSDLFV- Site 270
A_terreus_3 IGIVGDAGVR G TAQQPRLYV- Site 270
A_pisum_3 IGIVGDAGVR G TAQQPRLFV- Site 270
S_Salar_3 IGIVGDAGVR G TAQQPRLFV- Site 270
P_marneffei_3 IGIVGDAGVR G SAQQPRLYV- Site 270
P_stipitis_3 IGIVGDAGVR G NAQQPRLFV- Site 270
A_fumigatus_11 IGIVGDAGVR A YMQQSRVYV- Site 270
A_gossypii_3 IGIVGDAGVR G NAQQPRLFV- Site 270
C_hominis_3 IGVAGDAGIR G TAQQSKLFV- Site 270
C_muris_16 VGITGSSAAL C DAQKAELFP- Site 270
X_laevis_16 VGIVGSGAAL A DAQNPSLFV- Site 270
M_mulatta_3 VGIVRNAGVR A TAQQPRLFM- Site 270
M_brevicollis_16 VGIVGSGAAL A DAQNGALFV- Site 270
K_lactis_3 IGIVGDAGVR G TAQQPRLFV- Site 270
T_castaneum_16 VGIVGSGAAL A DAANAALFV- Site 270
Species Residue at Site 315
in 'msaprobs'
muscle

The residue for every species at site 315 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

C_intestinalis_16 VGIVGSGAAI A DAANPNLFV- Site 270
E_caballus_3 IGIVGDAGVR G TAQQPRLFV- Site 270
C_globosum_3 IGIVGDAGVR G TAQQPRLFV- Site 270
A_clavatus_3 IGIVGDAGVR G TAQQPRLYV- Site 270
N_crassa_11 IGIVGDKGVR S FMLQSRIFV- Site 270
N_crassa_16 VGINGSGAAL A DAADPTLFV- Site 270
X_tropicalis_16 VGIVGSGAAL A DAQNPSLFV- Site 270
P_anserina_11 IGVVGDKGVR S YMQQSRVFV- Site 270
P_vivax_16 VGITGSSCAL G DAHNSDLFV- Site 270
P_anserina_16 VGINGSGAAL A DAADPTLFV- Site 270
H_sapiens_16 VGIVGSGAAL A DAQNPSLFV- Site 270
T_annulata_3 IGIVGDAGVR A HAQQTRLFV- Site 270
C_intestinalis_3 IGIVGDSGVR G TAQQPKLFV- Site 270
L_elongisporus_11 IGIVGDEGVR Q FMHQPRLFV- Site 270
A_gossypii_16 VGITGATAAV S DAANSALFV- Site 270
A_pisum_16 VGVVGSGAAL A DAANSSLFV- Site 270
N_crassa_3 IGIVGDAGVR G TAQQPRLFV- Site 270
V_polyspora_3 IGIVGDAGVR G TAQQPRLFV- Site 270
S_cerevisiae_3 IGIVGDAGVR G SSQQPRLFV- Site 270
P_marneffei_16 VGINGSGAAL A DAADPSLFV- Site 270
D_hansenii_3 IGIVGDAGVR G TAQQPRLFV- Site 270
S_pombe_11 IGVVGDRGVQ S FMRQDRIFV- Site 270
T_guttata_3 IGIVGDAGVR G TAQQPRLFV- Site 270
S_pombe_16 VGITGSSAAL A DAQDASLFV- Site 270
B_fuckeliana_3 IGIVGDAGVR G TAQQPRLFV- Site 270
Species Residue at Site 315
in 'msaprobs'
muscle

The residue for every species at site 315 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

T_adhaerens_16 VGIVGSGAAL A DAQNASLFV- Site 270
S_cerevisiae_16 VGITGATAAI S DAADSALFV- Site 270
R_norvegicus_3 IGIVGDAGVR G TAQQPRLFV- Site 270
S_cerevisiae_11 IGMVGDVGVR K YMHQPRLFV- Site 270
B_taurus_3 IGIVGDAGVR G TAQQPRLFV- Site 270
C_familiaris_3 IGIVGDAGVR G TAQQPRLFV- Site 270
P_anserina_3 IGIVGDAGVR G TAQQPRLFV- Site 270
P_marneffei_11 IGVVGDAGVR S YMQQSRVYV- Site 270
P_knowlesi_3 IGIVGDAGVR A NAQQNRLFI- Site 270
T_guttata_16 VGIVGSGAAL A DAQNASLFV- Site 270
B_fuckeliana_11 IGVVGDMGVR S YMQQSRIFV- Site 270
C_cinerea_okayama_3 IGIVGDAGVR G TAQQPRLFV- Site 270
P_falciparum_16 VGITGSSCAI G DAHSSDLFV- Site 270
N_vectensis_16 VGLVGSGAAL A DAQNGALFV- Site 270
A_niger_11 IGVVGDAGVR A YMQQSRVYV- Site 270
A_niger_16 VGINGSGAAL A DAADPSLFV- Site 270
C_parvum_3 IGIVGDAGVR A AAQQPRLLT- Site 270
S_purpuratus_16 VGIVGSGAAL A DAQNASLFV- Site 270
B_floridae_3 VGIVGDAGVR G TAQQPRLFV- Site 270
Y_lipolytica_16 VGITGSTAAV A DAADSALFV- Site 270
A_mellifera_3 IGIVGDAGVR G TAQQPRLFV- Site 270
A_clavatus_16 VGINGSGAAL A DAADPSLFV- Site 270
A_clavatus_11 IGIVGDAGVR A YMQQSRVYV- Site 270
S_sclerotiorum_3 IGIVGDAGVR G TAQQPRLFV- Site 270
P_falciparum_3 IGIVGDAGVR A NAQQNRLFI- Site 270
Species Residue at Site 315
in 'msaprobs'
muscle

The residue for every species at site 315 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

D_discoideum_16 VGIAGSGCAL G DAQNPSLFV- Site 270
C_cinerea_okayama_11 IGHVGDSCVR A YVHESKIFV- Site 270
D_hansenii_16 VGVTGSTAAI S DAADSSLFV- Site 270
D_hansenii_11 IGIVGDEGVR Q FMHQPRLFV- Site 270
C_cinerea_okayama_16 VGVTGSTAAL G DAADPDLFV- Site 270
P_vivax_3 IGIVGDAGVR A NAQQNRLFI- Site 270
C_immitis_3 IGIVGDAGVR G TAQQPRLFV- Site 270
G_zeae_11 IGIVGDTGVR A YMEQSRIFV- Site 270
C_neoformans_3 IGIVGDAGVR G TAQQPRLFV- Site 270
H_sapiens_3 IGIVGDAGVR G TAQQPRLFV- Site 270
G_zeae_16 VGINGSGAAL A DAADPSLFV- Site 270
Y_lipolytica_11 IGIVGDEGVR N FMLQPRLFV- Site 270
M_brevicollis_3 IGIVGDSGVR G TAQQPKLFV- Site 270
D_discoideum_3 IGIVGDSGVR A FGQQPKLYV- Site 270
P_stipitis_16 VGVTGSTAAI S DAADSSLFV- Site 270
C_albicans_16 VGITGSTAAI S DAADSSLFV- Site 270
C_albicans_11 IGIVGDEGVR Q FMHQPRLFV- Site 270
P_stipitis_11 IGIVGDEGVR Q FMHQPKLFV- Site 270
X_laevis_3 IGIVGDAGVR G TAQQPRLFV- Site 270
C_glabrata_11 IGIVGDVGVR K YMHQPRLFV- Site 270
E_caballus_16 VGIVGSGAAL A DAQNPSLFV- Site 270
C_glabrata_16 VGITGATAAV A DAADSSLFV- Site 270
V_polyspora_11 IGIVGDIGVR K FMHQQRLFV- Site 270
V_polyspora_16 VGITGSTAAI S DAADPTLFV- Site 270
C_hominis_16 VGITGSSTAL A DAQRGELFS- Site 270
Species Residue at Site 315
in 'msaprobs'
muscle

The residue for every species at site 315 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

C_globosum_11 IGIVGDKGVR A YMLQSRVFV- Site 270
C_globosum_16 VGINGSGAAL A DAADPTLFV- Site 270
O_mordax_16 VGIVGSGAAL A DAQNASLFV- Site 270
D_rerio_16 VGIVGSGAAL A DAQNANLFV- Site 270
B_bovis_3 IGIVGDAGVR A NAQQTRLFV- Site 270
B_floridae_16 VGIVGSGAAL A DAQNASLFV- Site 270
M_musculus_3 IGIVGDAGVR G TAQQPRLFV- Site 270
A_fumigatus_16 VGINGSGAAL A DAADPSLFV- Site 270
C_familiaris_16 VGIVGSGAAL A DAQNPSLFV- Site 270
K_lactis_11 IGIVGDVGVR K YMHQPRLFV- Site 270
K_lactis_16 VGITGATAAI S DAADSSLFV- Site 270
B_taurus_16 VGIVGSGAAL A DAQNPSLFV- Site 270
S_sclerotiorum_16 VGINGSGAAL A DAADPSLFV- Site 270
S_sclerotiorum_11 IGIVGDMGVR S YMQQSRIFV- Site 270
R_norvegicus_16 VGIVGSGAAL A DAQNPSLFV- Site 270

Generated by PhyloBot at 17:02, October 30th 2020
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