V-ATPase Ancestral Library

If you use these results in your work, please cite: Hanson-Smith and Johnson, PLoS Comp. Bio., 2016


Overview | Alignments | Sites | Trees | Ancestors | Mutations


Select an Alignment:

Select a Site:

Site 313 in Alignment 'msaprobs'


Similarity to Other Alignments

What percentage of the residues at this site are inferred to be a single site (i.e. homologous) in the alignments produced by other methods? A value of 100% indicates that the existence of site 313 is robust across multiple methods. Values less than 100% indicate that other alignment methods made different homology inferences.

Similarity of Site 313 in 'msaprobs'
to Sites in 'muscle'

What percentage of the residues at this site in msaprobs are inferred to be a single site (i.e. homologous) in the alignments produced by muscle? A value of 100% indicates that the existence of site 313 is reproduced using the muscle method. Values less than 100% indicate that muscle made different homology inferences for the residues at this site.


Species Residue at Site 313
in 'msaprobs'
muscle

The residue for every species at site 313 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

M_musculus_16 VCVGIVGSGA A LADAQNPSLF Site 265
O_mordax_3 FAIGIVGDAG V RGTAQQPRLF Site 265
D_rerio_3 FAIGIVGDAG V RGTAQQPRLF Site 265
M_grisea_16 VAVGINGSGA A LADAADPTLF Site 265
M_grisea_11 YCIGIVGDKG V RAYMEQSRIF Site 265
A_niger_3 FAIGIVGDAG V RGTAQQPRLY Site 265
C_glabrata_3 FAIGIVGDAG V RGTAQQPRLF Site 265
A_terreus_11 YTIGTVGDAF D RR--SDPELE Site 265
A_terreus_16 ISVGINGSGA A LADAADASLF Site 265
C_parvum_16 ISVGITGSST A LADAQRGELF Site 265
T_adhaerens_3 FAIGIVGDAG V RGTAQQPRLF Site 265
T_castaneum_3 FAIGIVGDAG V RGTAQQPRLF Site 265
X_tropicalis_3 FAIGIVGDAG V RGTAQQPRLF Site 265
G_zeae_3 FAIGIVGDAG V RGTAQQPRLF Site 265
L_elongisporus_3 FAIGIVGDAG V RGTAQQPRLF Site 265
A_fumigatus_3 FAIGIVGDAG V RGTAQQPRLY Site 265
M_grisea_3 FAIGIVGDAG V RGTAQQPRLF Site 265
S_pombe_3 FAIGIVGDAG V RGTAQQPRLF Site 265
C_albicans_3 YAIGIVGDEG V RQFMHQPRLF Site 265
B_bovis_16 LSVGAVGSAC A LADAQKPQLF Site 265
C_muris_3 LAIGIVGDAG V RAAAQQPRLL Site 265
S_purpuratus_3 FAIGIVGDAG V RGTAQQPRLF Site 265
C_immitis_16 VAVGINGSSA A LADASDPSLF Site 265
M_mulatta_16 VCVGIVGSGA A LADAQNPSLF Site 265
Y_lipolytica_3 FAIGIVGDAG V RGTAQQPRLF Site 265
Species Residue at Site 313
in 'msaprobs'
muscle

The residue for every species at site 313 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

B_fuckeliana_16 VSVGINGSGA A LADAADPSLF Site 265
C_immitis_11 YTIGIVGDAG T RAFMQQSRVF Site 265
A_mellifera_16 IAVGIVGSGA A LSDAANSALF Site 265
A_gossypii_11 YAIGIVGDVG V RKFMHQPRLF Site 265
T_annulata_16 ISVGVVGSAC A LADAQKPQLF Site 265
N_vectensis_3 FAIGIVGDAG V RGTAQQPRLF Site 265
S_Salar_16 ICVGIVGSGA A LADAQNGSLF Site 265
L_elongisporus_16 IAVGITGSTA A ISDAADSALF Site 265
C_neoformans_16 VSVGITGSTA A VADAADPQLF Site 265
C_neoformans_11 YAIGIVGDAC V RAYLYESKVF Site 265
P_knowlesi_16 VSVGITGSSC A LGDAHNSDLF Site 265
A_terreus_3 FAIGIVGDAG V RGTAQQPRLY Site 265
A_pisum_3 FAIGIVGDAG V RGTAQQPRLF Site 265
S_Salar_3 FAIGIVGDAG V RGTAQQPRLF Site 265
P_marneffei_3 FAIGIVGDAG V RGSAQQPRLY Site 265
P_stipitis_3 FAIGIVGDAG V RGNAQQPRLF Site 265
A_fumigatus_11 YTIGIVGDAG V RAYMQQSRVY Site 265
A_gossypii_3 FAIGIVGDAG V RGNAQQPRLF Site 265
C_hominis_3 FTIGVAGDAG I RGTAQQSKLF Site 265
C_muris_16 ISVGITGSSA A LCDAQKAELF Site 265
X_laevis_16 ICVGIVGSGA A LADAQNPSLF Site 265
M_mulatta_3 FAVGIVRNAG V RATAQQPRLF Site 265
M_brevicollis_16 VCVGIVGSGA A LADAQNGALF Site 265
K_lactis_3 FAIGIVGDAG V RGTAQQPRLF Site 265
T_castaneum_16 IAVGIVGSGA A LADAANAALF Site 265
Species Residue at Site 313
in 'msaprobs'
muscle

The residue for every species at site 313 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

C_intestinalis_16 ICVGIVGSGA A IADAANPNLF Site 265
E_caballus_3 FAIGIVGDAG V RGTAQQPRLF Site 265
C_globosum_3 FAIGIVGDAG V RGTAQQPRLF Site 265
A_clavatus_3 FAIGIVGDAG V RGTAQQPRLY Site 265
N_crassa_11 YCIGIVGDKG V RSFMLQSRIF Site 265
N_crassa_16 VAVGINGSGA A LADAADPTLF Site 265
X_tropicalis_16 ICVGIVGSGA A LADAQNPSLF Site 265
P_anserina_11 YCIGVVGDKG V RSYMQQSRVF Site 265
P_vivax_16 VSVGITGSSC A LGDAHNSDLF Site 265
P_anserina_16 VAVGINGSGA A LADAADPTLF Site 265
H_sapiens_16 VCVGIVGSGA A LADAQNPSLF Site 265
T_annulata_3 LAIGIVGDAG V RAHAQQTRLF Site 265
C_intestinalis_3 VAIGIVGDSG V RGTAQQPKLF Site 265
L_elongisporus_11 YAIGIVGDEG V RQFMHQPRLF Site 265
A_gossypii_16 IAVGITGATA A VSDAANSALF Site 265
A_pisum_16 IAVGVVGSGA A LADAANSSLF Site 265
N_crassa_3 FAIGIVGDAG V RGTAQQPRLF Site 265
V_polyspora_3 FAIGIVGDAG V RGTAQQPRLF Site 265
S_cerevisiae_3 FAIGIVGDAG V RGSSQQPRLF Site 265
P_marneffei_16 ISVGINGSGA A LADAADPSLF Site 265
D_hansenii_3 FAIGIVGDAG V RGTAQQPRLF Site 265
S_pombe_11 YAIGVVGDRG V QSFMRQDRIF Site 265
T_guttata_3 FAIGIVGDAG V RGTAQQPRLF Site 265
S_pombe_16 VCVGITGSSA A LADAQDASLF Site 265
B_fuckeliana_3 FAIGIVGDAG V RGTAQQPRLF Site 265
Species Residue at Site 313
in 'msaprobs'
muscle

The residue for every species at site 313 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

T_adhaerens_16 ICVGIVGSGA A LADAQNASLF Site 265
S_cerevisiae_16 IAVGITGATA A ISDAADSALF Site 265
R_norvegicus_3 FAIGIVGDAG V RGTAQQPRLF Site 265
S_cerevisiae_11 YAIGMVGDVG V RKYMHQPRLF Site 265
B_taurus_3 FAIGIVGDAG V RGTAQQPRLF Site 265
C_familiaris_3 FAIGIVGDAG V RGTAQQPRLF Site 265
P_anserina_3 FAIGIVGDAG V RGTAQQPRLF Site 265
P_marneffei_11 YTIGVVGDAG V RSYMQQSRVY Site 265
P_knowlesi_3 LAIGIVGDAG V RANAQQNRLF Site 265
T_guttata_16 VCVGIVGSGA A LADAQNASLF Site 265
B_fuckeliana_11 YAIGVVGDMG V RSYMQQSRIF Site 265
C_cinerea_okayama_3 FAIGIVGDAG V RGTAQQPRLF Site 265
P_falciparum_16 VSVGITGSSC A IGDAHSSDLF Site 265
N_vectensis_16 ICVGLVGSGA A LADAQNGALF Site 265
A_niger_11 YTIGVVGDAG V RAYMQQSRVY Site 265
A_niger_16 ISVGINGSGA A LADAADPSLF Site 265
C_parvum_3 LAIGIVGDAG V RAAAQQPRLL Site 265
S_purpuratus_16 ICVGIVGSGA A LADAQNASLF Site 265
B_floridae_3 FAVGIVGDAG V RGTAQQPRLF Site 265
Y_lipolytica_16 ICVGITGSTA A VADAADSALF Site 265
A_mellifera_3 FAIGIVGDAG V RGTAQQPRLF Site 265
A_clavatus_16 ISVGINGSGA A LADAADPSLF Site 265
A_clavatus_11 YTIGIVGDAG V RAYMQQSRVY Site 265
S_sclerotiorum_3 FAIGIVGDAG V RGTAQQPRLF Site 265
P_falciparum_3 LAIGIVGDAG V RANAQQNRLF Site 265
Species Residue at Site 313
in 'msaprobs'
muscle

The residue for every species at site 313 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

D_discoideum_16 VCVGIAGSGC A LGDAQNPSLF Site 265
C_cinerea_okayama_11 YAIGHVGDSC V RAYVHESKIF Site 265
D_hansenii_16 LAVGVTGSTA A ISDAADSSLF Site 265
D_hansenii_11 YSIGIVGDEG V RQFMHQPRLF Site 265
C_cinerea_okayama_16 VCVGVTGSTA A LGDAADPDLF Site 265
P_vivax_3 LAIGIVGDAG V RANAQQNRLF Site 265
C_immitis_3 FAIGIVGDAG V RGTAQQPRLF Site 265
G_zeae_11 YCIGIVGDTG V RAYMEQSRIF Site 265
C_neoformans_3 FAIGIVGDAG V RGTAQQPRLF Site 265
H_sapiens_3 FAIGIVGDAG V RGTAQQPRLF Site 265
G_zeae_16 VAVGINGSGA A LADAADPSLF Site 265
Y_lipolytica_11 YAIGIVGDEG V RNFMLQPRLF Site 265
M_brevicollis_3 FAIGIVGDSG V RGTAQQPKLF Site 265
D_discoideum_3 MAIGIVGDSG V RAFGQQPKLY Site 265
P_stipitis_16 LAVGVTGSTA A ISDAADSSLF Site 265
C_albicans_16 IAVGITGSTA A ISDAADSSLF Site 265
C_albicans_11 YAIGIVGDEG V RQFMHQPRLF Site 265
P_stipitis_11 YAIGIVGDEG V RQFMHQPKLF Site 265
X_laevis_3 FAIGIVGDAG V RGTAQQPRLF Site 265
C_glabrata_11 YAIGIVGDVG V RKYMHQPRLF Site 265
E_caballus_16 VCVGIVGSGA A LADAQNPSLF Site 265
C_glabrata_16 VSVGITGATA A VADAADSSLF Site 265
V_polyspora_11 YAIGIVGDIG V RKFMHQQRLF Site 265
V_polyspora_16 VAVGITGSTA A ISDAADPTLF Site 265
C_hominis_16 ISVGITGSST A LADAQRGELF Site 265
Species Residue at Site 313
in 'msaprobs'
muscle

The residue for every species at site 313 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

C_globosum_11 YCIGIVGDKG V RAYMLQSRVF Site 265
C_globosum_16 VAVGINGSGA A LADAADPTLF Site 265
O_mordax_16 ICVGIVGSGA A LADAQNASLF Site 265
D_rerio_16 ICVGIVGSGA A LADAQNANLF Site 265
B_bovis_3 LAIGIVGDAG V RANAQQTRLF Site 265
B_floridae_16 ICVGIVGSGA A LADAQNASLF Site 265
M_musculus_3 FAIGIVGDAG V RGTAQQPRLF Site 265
A_fumigatus_16 ISVGINGSGA A LADAADPSLF Site 265
C_familiaris_16 VCVGIVGSGA A LADAQNPSLF Site 265
K_lactis_11 YAIGIVGDVG V RKYMHQPRLF Site 265
K_lactis_16 VAVGITGATA A ISDAADSSLF Site 265
B_taurus_16 VCVGIVGSGA A LADAQNPSLF Site 265
S_sclerotiorum_16 VSVGINGSGA A LADAADPSLF Site 265
S_sclerotiorum_11 YAIGIVGDMG V RSYMQQSRIF Site 265
R_norvegicus_16 VCVGIVGSGA A LADAQNPSLF Site 265

Generated by PhyloBot at 16:08, October 30th 2020
Questions/Comments? help@phylobot.com