V-ATPase Ancestral Library

If you use these results in your work, please cite: Hanson-Smith and Johnson, PLoS Comp. Bio., 2016


Overview | Alignments | Sites | Trees | Ancestors | Mutations


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Select a Site:

Site 312 in Alignment 'msaprobs'


Similarity to Other Alignments

What percentage of the residues at this site are inferred to be a single site (i.e. homologous) in the alignments produced by other methods? A value of 100% indicates that the existence of site 312 is robust across multiple methods. Values less than 100% indicate that other alignment methods made different homology inferences.

Similarity of Site 312 in 'msaprobs'
to Sites in 'muscle'

What percentage of the residues at this site in msaprobs are inferred to be a single site (i.e. homologous) in the alignments produced by muscle? A value of 100% indicates that the existence of site 312 is reproduced using the muscle method. Values less than 100% indicate that muscle made different homology inferences for the residues at this site.


Species Residue at Site 312
in 'msaprobs'
muscle

The residue for every species at site 312 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

M_musculus_16 GVCVGIVGSG A ALADAQNPSL Site 264
O_mordax_3 GFAIGIVGDA G VRGTAQQPRL Site 264
D_rerio_3 GFAIGIVGDA G VRGTAQQPRL Site 264
M_grisea_16 GVAVGINGSG A ALADAADPTL Site 264
M_grisea_11 GYCIGIVGDK G VRAYMEQSRI Site 264
A_niger_3 GFAIGIVGDA G VRGTAQQPRL Site 264
C_glabrata_3 GFAIGIVGDA G VRGTAQQPRL Site 264
A_terreus_11 GYTIGTVGDA F DRR--SDPEL Site 264
A_terreus_16 GISVGINGSG A ALADAADASL Site 264
C_parvum_16 GISVGITGSS T ALADAQRGEL Site 264
T_adhaerens_3 GFAIGIVGDA G VRGTAQQPRL Site 264
T_castaneum_3 GFAIGIVGDA G VRGTAQQPRL Site 264
X_tropicalis_3 GFAIGIVGDA G VRGTAQQPRL Site 264
G_zeae_3 GFAIGIVGDA G VRGTAQQPRL Site 264
L_elongisporus_3 GFAIGIVGDA G VRGTAQQPRL Site 264
A_fumigatus_3 GFAIGIVGDA G VRGTAQQPRL Site 264
M_grisea_3 GFAIGIVGDA G VRGTAQQPRL Site 264
S_pombe_3 GFAIGIVGDA G VRGTAQQPRL Site 264
C_albicans_3 GYAIGIVGDE G VRQFMHQPRL Site 264
B_bovis_16 GLSVGAVGSA C ALADAQKPQL Site 264
C_muris_3 GLAIGIVGDA G VRAAAQQPRL Site 264
S_purpuratus_3 GFAIGIVGDA G VRGTAQQPRL Site 264
C_immitis_16 GVAVGINGSS A ALADASDPSL Site 264
M_mulatta_16 GVCVGIVGSG A ALADAQNPSL Site 264
Y_lipolytica_3 GFAIGIVGDA G VRGTAQQPRL Site 264
Species Residue at Site 312
in 'msaprobs'
muscle

The residue for every species at site 312 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

B_fuckeliana_16 GVSVGINGSG A ALADAADPSL Site 264
C_immitis_11 GYTIGIVGDA G TRAFMQQSRV Site 264
A_mellifera_16 GIAVGIVGSG A ALSDAANSAL Site 264
A_gossypii_11 GYAIGIVGDV G VRKFMHQPRL Site 264
T_annulata_16 GISVGVVGSA C ALADAQKPQL Site 264
N_vectensis_3 GFAIGIVGDA G VRGTAQQPRL Site 264
S_Salar_16 GICVGIVGSG A ALADAQNGSL Site 264
L_elongisporus_16 GIAVGITGST A AISDAADSAL Site 264
C_neoformans_16 GVSVGITGST A AVADAADPQL Site 264
C_neoformans_11 GYAIGIVGDA C VRAYLYESKV Site 264
P_knowlesi_16 GVSVGITGSS C ALGDAHNSDL Site 264
A_terreus_3 GFAIGIVGDA G VRGTAQQPRL Site 264
A_pisum_3 GFAIGIVGDA G VRGTAQQPRL Site 264
S_Salar_3 GFAIGIVGDA G VRGTAQQPRL Site 264
P_marneffei_3 GFAIGIVGDA G VRGSAQQPRL Site 264
P_stipitis_3 GFAIGIVGDA G VRGNAQQPRL Site 264
A_fumigatus_11 GYTIGIVGDA G VRAYMQQSRV Site 264
A_gossypii_3 GFAIGIVGDA G VRGNAQQPRL Site 264
C_hominis_3 GFTIGVAGDA G IRGTAQQSKL Site 264
C_muris_16 GISVGITGSS A ALCDAQKAEL Site 264
X_laevis_16 GICVGIVGSG A ALADAQNPSL Site 264
M_mulatta_3 GFAVGIVRNA G VRATAQQPRL Site 264
M_brevicollis_16 GVCVGIVGSG A ALADAQNGAL Site 264
K_lactis_3 GFAIGIVGDA G VRGTAQQPRL Site 264
T_castaneum_16 GIAVGIVGSG A ALADAANAAL Site 264
Species Residue at Site 312
in 'msaprobs'
muscle

The residue for every species at site 312 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

C_intestinalis_16 GICVGIVGSG A AIADAANPNL Site 264
E_caballus_3 GFAIGIVGDA G VRGTAQQPRL Site 264
C_globosum_3 GFAIGIVGDA G VRGTAQQPRL Site 264
A_clavatus_3 GFAIGIVGDA G VRGTAQQPRL Site 264
N_crassa_11 GYCIGIVGDK G VRSFMLQSRI Site 264
N_crassa_16 GVAVGINGSG A ALADAADPTL Site 264
X_tropicalis_16 GICVGIVGSG A ALADAQNPSL Site 264
P_anserina_11 GYCIGVVGDK G VRSYMQQSRV Site 264
P_vivax_16 GVSVGITGSS C ALGDAHNSDL Site 264
P_anserina_16 GVAVGINGSG A ALADAADPTL Site 264
H_sapiens_16 GVCVGIVGSG A ALADAQNPSL Site 264
T_annulata_3 GLAIGIVGDA G VRAHAQQTRL Site 264
C_intestinalis_3 GVAIGIVGDS G VRGTAQQPKL Site 264
L_elongisporus_11 GYAIGIVGDE G VRQFMHQPRL Site 264
A_gossypii_16 GIAVGITGAT A AVSDAANSAL Site 264
A_pisum_16 GIAVGVVGSG A ALADAANSSL Site 264
N_crassa_3 GFAIGIVGDA G VRGTAQQPRL Site 264
V_polyspora_3 GFAIGIVGDA G VRGTAQQPRL Site 264
S_cerevisiae_3 GFAIGIVGDA G VRGSSQQPRL Site 264
P_marneffei_16 GISVGINGSG A ALADAADPSL Site 264
D_hansenii_3 GFAIGIVGDA G VRGTAQQPRL Site 264
S_pombe_11 GYAIGVVGDR G VQSFMRQDRI Site 264
T_guttata_3 GFAIGIVGDA G VRGTAQQPRL Site 264
S_pombe_16 GVCVGITGSS A ALADAQDASL Site 264
B_fuckeliana_3 GFAIGIVGDA G VRGTAQQPRL Site 264
Species Residue at Site 312
in 'msaprobs'
muscle

The residue for every species at site 312 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

T_adhaerens_16 GICVGIVGSG A ALADAQNASL Site 264
S_cerevisiae_16 GIAVGITGAT A AISDAADSAL Site 264
R_norvegicus_3 GFAIGIVGDA G VRGTAQQPRL Site 264
S_cerevisiae_11 GYAIGMVGDV G VRKYMHQPRL Site 264
B_taurus_3 GFAIGIVGDA G VRGTAQQPRL Site 264
C_familiaris_3 GFAIGIVGDA G VRGTAQQPRL Site 264
P_anserina_3 GFAIGIVGDA G VRGTAQQPRL Site 264
P_marneffei_11 GYTIGVVGDA G VRSYMQQSRV Site 264
P_knowlesi_3 GLAIGIVGDA G VRANAQQNRL Site 264
T_guttata_16 GVCVGIVGSG A ALADAQNASL Site 264
B_fuckeliana_11 GYAIGVVGDM G VRSYMQQSRI Site 264
C_cinerea_okayama_3 GFAIGIVGDA G VRGTAQQPRL Site 264
P_falciparum_16 GVSVGITGSS C AIGDAHSSDL Site 264
N_vectensis_16 GICVGLVGSG A ALADAQNGAL Site 264
A_niger_11 GYTIGVVGDA G VRAYMQQSRV Site 264
A_niger_16 GISVGINGSG A ALADAADPSL Site 264
C_parvum_3 GLAIGIVGDA G VRAAAQQPRL Site 264
S_purpuratus_16 GICVGIVGSG A ALADAQNASL Site 264
B_floridae_3 GFAVGIVGDA G VRGTAQQPRL Site 264
Y_lipolytica_16 GICVGITGST A AVADAADSAL Site 264
A_mellifera_3 GFAIGIVGDA G VRGTAQQPRL Site 264
A_clavatus_16 GISVGINGSG A ALADAADPSL Site 264
A_clavatus_11 GYTIGIVGDA G VRAYMQQSRV Site 264
S_sclerotiorum_3 GFAIGIVGDA G VRGTAQQPRL Site 264
P_falciparum_3 GLAIGIVGDA G VRANAQQNRL Site 264
Species Residue at Site 312
in 'msaprobs'
muscle

The residue for every species at site 312 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

D_discoideum_16 GVCVGIAGSG C ALGDAQNPSL Site 264
C_cinerea_okayama_11 GYAIGHVGDS C VRAYVHESKI Site 264
D_hansenii_16 GLAVGVTGST A AISDAADSSL Site 264
D_hansenii_11 GYSIGIVGDE G VRQFMHQPRL Site 264
C_cinerea_okayama_16 GVCVGVTGST A ALGDAADPDL Site 264
P_vivax_3 GLAIGIVGDA G VRANAQQNRL Site 264
C_immitis_3 GFAIGIVGDA G VRGTAQQPRL Site 264
G_zeae_11 GYCIGIVGDT G VRAYMEQSRI Site 264
C_neoformans_3 GFAIGIVGDA G VRGTAQQPRL Site 264
H_sapiens_3 GFAIGIVGDA G VRGTAQQPRL Site 264
G_zeae_16 GVAVGINGSG A ALADAADPSL Site 264
Y_lipolytica_11 GYAIGIVGDE G VRNFMLQPRL Site 264
M_brevicollis_3 GFAIGIVGDS G VRGTAQQPKL Site 264
D_discoideum_3 GMAIGIVGDS G VRAFGQQPKL Site 264
P_stipitis_16 GLAVGVTGST A AISDAADSSL Site 264
C_albicans_16 GIAVGITGST A AISDAADSSL Site 264
C_albicans_11 GYAIGIVGDE G VRQFMHQPRL Site 264
P_stipitis_11 GYAIGIVGDE G VRQFMHQPKL Site 264
X_laevis_3 GFAIGIVGDA G VRGTAQQPRL Site 264
C_glabrata_11 GYAIGIVGDV G VRKYMHQPRL Site 264
E_caballus_16 GVCVGIVGSG A ALADAQNPSL Site 264
C_glabrata_16 GVSVGITGAT A AVADAADSSL Site 264
V_polyspora_11 GYAIGIVGDI G VRKFMHQQRL Site 264
V_polyspora_16 GVAVGITGST A AISDAADPTL Site 264
C_hominis_16 GISVGITGSS T ALADAQRGEL Site 264
Species Residue at Site 312
in 'msaprobs'
muscle

The residue for every species at site 312 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

C_globosum_11 GYCIGIVGDK G VRAYMLQSRV Site 264
C_globosum_16 GVAVGINGSG A ALADAADPTL Site 264
O_mordax_16 GICVGIVGSG A ALADAQNASL Site 264
D_rerio_16 GICVGIVGSG A ALADAQNANL Site 264
B_bovis_3 GLAIGIVGDA G VRANAQQTRL Site 264
B_floridae_16 GICVGIVGSG A ALADAQNASL Site 264
M_musculus_3 GFAIGIVGDA G VRGTAQQPRL Site 264
A_fumigatus_16 GISVGINGSG A ALADAADPSL Site 264
C_familiaris_16 GVCVGIVGSG A ALADAQNPSL Site 264
K_lactis_11 GYAIGIVGDV G VRKYMHQPRL Site 264
K_lactis_16 GVAVGITGAT A AISDAADSSL Site 264
B_taurus_16 GVCVGIVGSG A ALADAQNPSL Site 264
S_sclerotiorum_16 GVSVGINGSG A ALADAADPSL Site 264
S_sclerotiorum_11 GYAIGIVGDM G VRSYMQQSRI Site 264
R_norvegicus_16 GVCVGIVGSG A ALADAQNPSL Site 264

Generated by PhyloBot at 15:21, October 27th 2020
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