V-ATPase Ancestral Library

If you use these results in your work, please cite: Hanson-Smith and Johnson, PLoS Comp. Bio., 2016


Overview | Alignments | Sites | Trees | Ancestors | Mutations


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Select a Site:

Site 306 in Alignment 'msaprobs'


Similarity to Other Alignments

What percentage of the residues at this site are inferred to be a single site (i.e. homologous) in the alignments produced by other methods? A value of 100% indicates that the existence of site 306 is robust across multiple methods. Values less than 100% indicate that other alignment methods made different homology inferences.

Similarity of Site 306 in 'msaprobs'
to Sites in 'muscle'

What percentage of the residues at this site in msaprobs are inferred to be a single site (i.e. homologous) in the alignments produced by muscle? A value of 100% indicates that the existence of site 306 is reproduced using the muscle method. Values less than 100% indicate that muscle made different homology inferences for the residues at this site.


Species Residue at Site 306
in 'msaprobs'
muscle

The residue for every species at site 306 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

M_musculus_16 LSNLFCGVCV G IVGSGAALAD Site 258
O_mordax_3 LSGLAAGFAI G IVGDAGVRGT Site 258
D_rerio_3 LSGLAAGFAI G IVGDAGVRGT Site 258
M_grisea_16 ACNLICGVAV G INGSGAALAD Site 258
M_grisea_11 LTGLAAGYCI G IVGDKGVRAY Site 258
A_niger_3 LAGMAAGFAI G IVGDAGVRGT Site 258
C_glabrata_3 LSGLAAGFAI G IVGDAGVRGT Site 258
A_terreus_11 LAGVAAGYTI G TVGDAFDRR- Site 258
A_terreus_16 MCNLICGISV G INGSGAALAD Site 258
C_parvum_16 LSNLFSGISV G ITGSSTALAD Site 258
T_adhaerens_3 LSGLAAGFAI G IVGDAGVRGT Site 258
T_castaneum_3 FSGLAAGFAI G IVGDAGVRGT Site 258
X_tropicalis_3 LSGLAAGFAI G IVGDAGVRGT Site 258
G_zeae_3 LAGLAAGFAI G IVGDAGVRGT Site 258
L_elongisporus_3 LSGLAAGFAI G IVGDAGVRGT Site 258
A_fumigatus_3 LAGMAAGFAI G IVGDAGVRGT Site 258
M_grisea_3 LAGLAAGFAI G IVGDAGVRGT Site 258
S_pombe_3 LAGLAAGFAI G IVGDAGVRGT Site 258
C_albicans_3 FACLASGYAI G IVGDEGVRQF Site 258
B_bovis_16 LCNLFCGLSV G AVGSACALAD Site 258
C_muris_3 LSCLAAGLAI G IVGDAGVRAA Site 258
S_purpuratus_3 LSGLAAGFAI G IVGDAGVRGT Site 258
C_immitis_16 MCNLICGVAV G INGSSAALAD Site 258
M_mulatta_16 LSNLFCGVCV G IVGSGAALAD Site 258
Y_lipolytica_3 LSGLAAGFAI G IVGDAGVRGT Site 258
Species Residue at Site 306
in 'msaprobs'
muscle

The residue for every species at site 306 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

B_fuckeliana_16 MCNLICGVSV G INGSGAALAD Site 258
C_immitis_11 LAGLAAGYTI G IVGDAGTRAF Site 258
A_mellifera_16 LVNLFCGIAV G IVGSGAALSD Site 258
A_gossypii_11 FACLSSGYAI G IVGDVGVRKF Site 258
T_annulata_16 FSNLFCGISV G VVGSACALAD Site 258
N_vectensis_3 LSGLAAGFAI G IVGDAGVRGT Site 258
S_Salar_16 FSNLFCGICV G IVGSGAALAD Site 258
L_elongisporus_16 ISNLICGIAV G ITGSTAAISD Site 258
C_neoformans_16 VCNLLCGVSV G ITGSTAAVAD Site 258
C_neoformans_11 FTGLAAGYAI G IVGDACVRAY Site 258
P_knowlesi_16 LSNLVSGVSV G ITGSSCALGD Site 258
A_terreus_3 LAGLAAGFAI G IVGDAGVRGT Site 258
A_pisum_3 FSGLAAGFAI G IVGDAGVRGT Site 258
S_Salar_3 LSGLAAGFAI G IVGDAGVRGT Site 258
P_marneffei_3 LAGLAAGFAI G IVGDAGVRGS Site 258
P_stipitis_3 LSGLAAGFAI G IVGDAGVRGN Site 258
A_fumigatus_11 LAGVAAGYTI G IVGDAGVRAY Site 258
A_gossypii_3 LSGLAAGFAI G IVGDAGVRGN Site 258
C_hominis_3 FSCAASGFTI G VAGDAGIRGT Site 258
C_muris_16 LSNLFSGISV G ITGSSAALCD Site 258
X_laevis_16 FSNLFCGICV G IVGSGAALAD Site 258
M_mulatta_3 PSGLAAGFAV G IVRNAGVRAT Site 258
M_brevicollis_16 FCNLVCGVCV G IVGSGAALAD Site 258
K_lactis_3 LSGLAAGFAI G IVGDAGVRGT Site 258
T_castaneum_16 LVNLFCGIAV G IVGSGAALAD Site 258
Species Residue at Site 306
in 'msaprobs'
muscle

The residue for every species at site 306 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

C_intestinalis_16 LSNLACGICV G IVGSGAAIAD Site 258
E_caballus_3 LSGLAAGFAI G IVGDAGVRGT Site 258
C_globosum_3 LAGMAAGFAI G IVGDAGVRGT Site 258
A_clavatus_3 LAGLAAGFAI G IVGDAGVRGT Site 258
N_crassa_11 LTGLAAGYCI G IVGDKGVRSF Site 258
N_crassa_16 MCNLVCGVAV G INGSGAALAD Site 258
X_tropicalis_16 FSNLFCGICV G IVGSGAALAD Site 258
P_anserina_11 LTGLAAGYCI G VVGDKGVRSY Site 258
P_vivax_16 LSNLVSGVSV G ITGSSCALGD Site 258
P_anserina_16 MCNLVCGVAV G INGSGAALAD Site 258
H_sapiens_16 LSNLFCGVCV G IVGSGAALAD Site 258
T_annulata_3 LCSLAAGLAI G IVGDAGVRAH Site 258
C_intestinalis_3 LSGLAAGVAI G IVGDSGVRGT Site 258
L_elongisporus_11 FACLASGYAI G IVGDEGVRQF Site 258
A_gossypii_16 VSNMICGIAV G ITGATAAVSD Site 258
A_pisum_16 LVNLFCGIAV G VVGSGAALAD Site 258
N_crassa_3 LAGLAAGFAI G IVGDAGVRGT Site 258
V_polyspora_3 LSGLAAGFAI G IVGDAGVRGT Site 258
S_cerevisiae_3 LSGLAAGFAI G IVGDAGVRGS Site 258
P_marneffei_16 ACNLICGISV G INGSGAALAD Site 258
D_hansenii_3 LSGLAAGFAI G IVGDAGVRGT Site 258
S_pombe_11 LTGVAAGYAI G VVGDRGVQSF Site 258
T_guttata_3 LSGLAAGFAI G IVGDAGVRGT Site 258
S_pombe_16 LCNLICGVCV G ITGSSAALAD Site 258
B_fuckeliana_3 LAGLAAGFAI G IVGDAGVRGT Site 258
Species Residue at Site 306
in 'msaprobs'
muscle

The residue for every species at site 306 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

T_adhaerens_16 LSNLACGICV G IVGSGAALAD Site 258
S_cerevisiae_16 ASNLICGIAV G ITGATAAISD Site 258
R_norvegicus_3 LSGLAAGFAI G IVGDAGVRGT Site 258
S_cerevisiae_11 FACLSSGYAI G MVGDVGVRKY Site 258
B_taurus_3 LSGLAAGFAI G IVGDAGVRGT Site 258
C_familiaris_3 LSGLAAGFAI G IVGDAGVRGT Site 258
P_anserina_3 LAGMAAGFAI G IVGDAGVRGT Site 258
P_marneffei_11 LAGIAAGYTI G VVGDAGVRSY Site 258
P_knowlesi_3 LSSLAAGLAI G IVGDAGVRAN Site 258
T_guttata_16 LCNLFCGVCV G IVGSGAALAD Site 258
B_fuckeliana_11 LTGLAAGYAI G VVGDMGVRSY Site 258
C_cinerea_okayama_3 LAGLAAGFAI G IVGDAGVRGT Site 258
P_falciparum_16 LSNLVSGVSV G ITGSSCAIGD Site 258
N_vectensis_16 FCNLACGICV G LVGSGAALAD Site 258
A_niger_11 LAGVAAGYTI G VVGDAGVRAY Site 258
A_niger_16 ACNLICGISV G INGSGAALAD Site 258
C_parvum_3 LSSLAAGLAI G IVGDAGVRAA Site 258
S_purpuratus_16 FTNLACGICV G IVGSGAALAD Site 258
B_floridae_3 LSGLAAGFAV G IVGDAGVRGT Site 258
Y_lipolytica_16 LGNLVCGICV G ITGSTAAVAD Site 258
A_mellifera_3 FSGLAAGFAI G IVGDAGVRGT Site 258
A_clavatus_16 ACNLICGISV G INGSGAALAD Site 258
A_clavatus_11 LAGLAAGYTI G IVGDAGVRAY Site 258
S_sclerotiorum_3 LAGLAAGFAI G IVGDAGVRGT Site 258
P_falciparum_3 LSSLAAGLAI G IVGDAGVRAN Site 258
Species Residue at Site 306
in 'msaprobs'
muscle

The residue for every species at site 306 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

D_discoideum_16 LCNVFSGVCV G IAGSGCALGD Site 258
C_cinerea_okayama_11 FTGMAAGYAI G HVGDSCVRAY Site 258
D_hansenii_16 ISNLICGLAV G VTGSTAAISD Site 258
D_hansenii_11 FACLASGYSI G IVGDEGVRQF Site 258
C_cinerea_okayama_16 ACNLLCGVCV G VTGSTAALGD Site 258
P_vivax_3 LSSLAAGLAI G IVGDAGVRAN Site 258
C_immitis_3 LAGLAAGFAI G IVGDAGVRGT Site 258
G_zeae_11 MTGLAAGYCI G IVGDTGVRAY Site 258
C_neoformans_3 LAGLAAGFAI G IVGDAGVRGT Site 258
H_sapiens_3 LSGLAAGFAI G IVGDAGVRGT Site 258
G_zeae_16 MCNLICGVAV G INGSGAALAD Site 258
Y_lipolytica_11 FAALASGYAI G IVGDEGVRNF Site 258
M_brevicollis_3 ISGLAAGFAI G IVGDSGVRGT Site 258
D_discoideum_3 LCGLAAGMAI G IVGDSGVRAF Site 258
P_stipitis_16 LSNLICGLAV G VTGSTAAISD Site 258
C_albicans_16 ISNLICGIAV G ITGSTAAISD Site 258
C_albicans_11 FACLASGYAI G IVGDEGVRQF Site 258
P_stipitis_11 FACLSSGYAI G IVGDEGVRQF Site 258
X_laevis_3 LSGLAAGFAI G IVGDAGVRGT Site 258
C_glabrata_11 FACLSSGYAI G IVGDVGVRKY Site 258
E_caballus_16 LSNLFCGVCV G IVGSGAALAD Site 258
C_glabrata_16 VSNLICGVSV G ITGATAAVAD Site 258
V_polyspora_11 FACLSSGYAI G IVGDIGVRKF Site 258
V_polyspora_16 VSNLICGVAV G ITGSTAAISD Site 258
C_hominis_16 LSNLFSGISV G ITGSSTALAD Site 258
Species Residue at Site 306
in 'msaprobs'
muscle

The residue for every species at site 306 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

C_globosum_11 LTALAAGYCI G IVGDKGVRAY Site 258
C_globosum_16 MCNLICGVAV G INGSGAALAD Site 258
O_mordax_16 FSNLFCGICV G IVGSGAALAD Site 258
D_rerio_16 FSNLFCGICV G IVGSGAALAD Site 258
B_bovis_3 FSGLASGLAI G IVGDAGVRAN Site 258
B_floridae_16 MCNLVCGICV G IVGSGAALAD Site 258
M_musculus_3 LSGLAAGFAI G IVGDAGVRGT Site 258
A_fumigatus_16 ACNLICGISV G INGSGAALAD Site 258
C_familiaris_16 LSNLFCGVCV G IVGSGAALAD Site 258
K_lactis_11 FACLSSGYAI G IVGDVGVRKY Site 258
K_lactis_16 VSNLICGVAV G ITGATAAISD Site 258
B_taurus_16 LSNLFCGVCV G IVGSGAALAD Site 258
S_sclerotiorum_16 MCNLICGVSV G INGSGAALAD Site 258
S_sclerotiorum_11 LTGLAAGYAI G IVGDMGVRSY Site 258
R_norvegicus_16 LSNLFCGVCV G IVGSGAALAD Site 258

Generated by PhyloBot at 17:18, October 30th 2020
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