V-ATPase Ancestral Library

If you use these results in your work, please cite: Hanson-Smith and Johnson, PLoS Comp. Bio., 2016


Overview | Alignments | Sites | Trees | Ancestors | Mutations


Select an Alignment:

Select a Site:

Site 300 in Alignment 'msaprobs'


Similarity to Other Alignments

What percentage of the residues at this site are inferred to be a single site (i.e. homologous) in the alignments produced by other methods? A value of 100% indicates that the existence of site 300 is robust across multiple methods. Values less than 100% indicate that other alignment methods made different homology inferences.

Similarity of Site 300 in 'msaprobs'
to Sites in 'muscle'

What percentage of the residues at this site in msaprobs are inferred to be a single site (i.e. homologous) in the alignments produced by muscle? A value of 100% indicates that the existence of site 300 is reproduced using the muscle method. Values less than 100% indicate that muscle made different homology inferences for the residues at this site.


Species Residue at Site 300
in 'msaprobs'
muscle

The residue for every species at site 300 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

M_musculus_16 AGLTVGLSNL F CGVCVGIVGS Site 252
O_mordax_3 AGLSVGLSGL A AGFAIGIVGD Site 252
D_rerio_3 AGLSVGLSGL A AGFAIGIVGD Site 252
M_grisea_16 SGLTVGACNL I CGVAVGINGS Site 252
M_grisea_11 CGLSVGLTGL A AGYCIGIVGD Site 252
A_niger_3 AGLAVGLAGM A AGFAIGIVGD Site 252
C_glabrata_3 AGLSVGLSGL A AGFAIGIVGD Site 252
A_terreus_11 SGLSVGLAGV A AGYTIGTVGD Site 252
A_terreus_16 GGITVGMCNL I CGISVGINGS Site 252
C_parvum_16 SGLTIGLSNL F SGISVGITGS Site 252
T_adhaerens_3 AGLSVGLSGL A AGFAIGIVGD Site 252
T_castaneum_3 AGLSVGFSGL A AGFAIGIVGD Site 252
X_tropicalis_3 AGLSVGLSGL A AGFAIGIVGD Site 252
G_zeae_3 AGLSVGLAGL A AGFAIGIVGD Site 252
L_elongisporus_3 AGLSVGLSGL A AGFAIGIVGD Site 252
A_fumigatus_3 AGLAVGLAGM A AGFAIGIVGD Site 252
M_grisea_3 AGLAVGLAGL A AGFAIGIVGD Site 252
S_pombe_3 AGLSVGLAGL A AGFAIGIVGD Site 252
C_albicans_3 CGLAVGFACL A SGYAIGIVGD Site 252
B_bovis_16 IGLTSGLCNL F CGLSVGAVGS Site 252
C_muris_3 AGLIIGLSCL A AGLAIGIVGD Site 252
S_purpuratus_3 AGLSVGLSGL A AGFAIGIVGD Site 252
C_immitis_16 GGLTVGMCNL I CGVAVGINGS Site 252
M_mulatta_16 AGLTVGLSNL F CGVCVGIVGS Site 252
Y_lipolytica_3 AGLSVGLSGL A AGFAIGIVGD Site 252
Species Residue at Site 300
in 'msaprobs'
muscle

The residue for every species at site 300 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

B_fuckeliana_16 SGITVGMCNL I CGVSVGINGS Site 252
C_immitis_11 AGLSVGLAGL A AGYTIGIVGD Site 252
A_mellifera_16 AGLAVGLVNL F CGIAVGIVGS Site 252
A_gossypii_11 AGLCVGFACL S SGYAIGIVGD Site 252
T_annulata_16 VGLIVGFSNL F CGISVGVVGS Site 252
N_vectensis_3 AGLSVGLSGL A AGFAIGIVGD Site 252
S_Salar_16 AGLTVGFSNL F CGICVGIVGS Site 252
L_elongisporus_16 AGLTVGISNL I CGIAVGITGS Site 252
C_neoformans_16 GGLAVGVCNL L CGVSVGITGS Site 252
C_neoformans_11 AGLACGFTGL A AGYAIGIVGD Site 252
P_knowlesi_16 SGLTAGLSNL V SGVSVGITGS Site 252
A_terreus_3 AGLAVGLAGL A AGFAIGIVGD Site 252
A_pisum_3 AGLSVGFSGL A AGFAIGIVGD Site 252
S_Salar_3 AGLSVGLSGL A AGFAIGIVGD Site 252
P_marneffei_3 AGLAVGLAGL A AGFAIGIVGD Site 252
P_stipitis_3 AGLSVGLSGL A AGFAIGIVGD Site 252
A_fumigatus_11 SGLSVGLAGV A AGYTIGIVGD Site 252
A_gossypii_3 AGLSVGLSGL A AGFAIGIVGD Site 252
C_hominis_3 AGLISGFSCA A SGFTIGVAGD Site 252
C_muris_16 SGLTIGLSNL F SGISVGITGS Site 252
X_laevis_16 AGLTVGFSNL F CGICVGIVGS Site 252
M_mulatta_3 AGLRVGPSGL A AGFAVGIVRN Site 252
M_brevicollis_16 GGITTGFCNL V CGVCVGIVGS Site 252
K_lactis_3 AGLSVGLSGL A AGFAIGIVGD Site 252
T_castaneum_16 AGVAVGLVNL F CGIAVGIVGS Site 252
Species Residue at Site 300
in 'msaprobs'
muscle

The residue for every species at site 300 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

C_intestinalis_16 AGLTTGLSNL A CGICVGIVGS Site 252
E_caballus_3 AGLSVGLSGL A AGFAIGIVGD Site 252
C_globosum_3 AGLAVGLAGM A AGFAIGIVGD Site 252
A_clavatus_3 AGLAVGLAGL A AGFAIGIVGD Site 252
N_crassa_11 CGLSVGLTGL A AGYCIGIVGD Site 252
N_crassa_16 AGLTVGMCNL V CGVAVGINGS Site 252
X_tropicalis_16 AGLTVGFSNL F CGICVGIVGS Site 252
P_anserina_11 CGLSVGLTGL A AGYCIGVVGD Site 252
P_vivax_16 SGLTAGLSNL V SGVSVGITGS Site 252
P_anserina_16 AGLTVGMCNL V CGVAVGINGS Site 252
H_sapiens_16 AGLTVGLSNL F CGVCVGIVGS Site 252
T_annulata_3 AGLVVGLCSL A AGLAIGIVGD Site 252
C_intestinalis_3 AGLSVGLSGL A AGVAIGIVGD Site 252
L_elongisporus_11 CGLSVGFACL A SGYAIGIVGD Site 252
A_gossypii_16 AGITVGVSNM I CGIAVGITGA Site 252
A_pisum_16 AGISVGLVNL F CGIAVGVVGS Site 252
N_crassa_3 AGLAVGLAGL A AGFAIGIVGD Site 252
V_polyspora_3 AGLSVGLSGL A AGFAIGIVGD Site 252
S_cerevisiae_3 AGLSVGLSGL A AGFAIGIVGD Site 252
P_marneffei_16 GGITVGACNL I CGISVGINGS Site 252
D_hansenii_3 AGLSVGLSGL A AGFAIGIVGD Site 252
S_pombe_11 AGLAVGLTGV A AGYAIGVVGD Site 252
T_guttata_3 AGLSVGLSGL A AGFAIGIVGD Site 252
S_pombe_16 GGITVGLCNL I CGVCVGITGS Site 252
B_fuckeliana_3 AGLSVGLAGL A AGFAIGIVGD Site 252
Species Residue at Site 300
in 'msaprobs'
muscle

The residue for every species at site 300 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

T_adhaerens_16 AGLTVGLSNL A CGICVGIVGS Site 252
S_cerevisiae_16 AGITVGASNL I CGIAVGITGA Site 252
R_norvegicus_3 AGLSVGLSGL A AGFAIGIVGD Site 252
S_cerevisiae_11 CGLCVGFACL S SGYAIGMVGD Site 252
B_taurus_3 AGLSVGLSGL A AGFAIGIVGD Site 252
C_familiaris_3 AGLSVGLSGL A AGFAIGIVGD Site 252
P_anserina_3 AGLSVGLAGM A AGFAIGIVGD Site 252
P_marneffei_11 SGLSVGLAGI A AGYTIGVVGD Site 252
P_knowlesi_3 SGLIVGLSSL A AGLAIGIVGD Site 252
T_guttata_16 AGLTVGLCNL F CGVCVGIVGS Site 252
B_fuckeliana_11 CGLSVGLTGL A AGYAIGVVGD Site 252
C_cinerea_okayama_3 AGLAVGLAGL A AGFAIGIVGD Site 252
P_falciparum_16 SGLTAGLSNL V SGVSVGITGS Site 252
N_vectensis_16 AGMTVGFCNL A CGICVGLVGS Site 252
A_niger_11 AGLSVGLAGV A AGYTIGVVGD Site 252
A_niger_16 GGITVGACNL I CGISVGINGS Site 252
C_parvum_3 AGLVIGLSSL A AGLAIGIVGD Site 252
S_purpuratus_16 AGLTVGFTNL A CGICVGIVGS Site 252
B_floridae_3 AGLSVGLSGL A AGFAVGIVGD Site 252
Y_lipolytica_16 AGLTVGLGNL V CGICVGITGS Site 252
A_mellifera_3 AGLAVGFSGL A AGFAIGIVGD Site 252
A_clavatus_16 GGITVGACNL I CGISVGINGS Site 252
A_clavatus_11 SGLSVGLAGL A AGYTIGIVGD Site 252
S_sclerotiorum_3 AGLSVGLAGL A AGFAIGIVGD Site 252
P_falciparum_3 SGLIVGLSSL A AGLAIGIVGD Site 252
Species Residue at Site 300
in 'msaprobs'
muscle

The residue for every species at site 300 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

D_discoideum_16 AGITVGLCNV F SGVCVGIAGS Site 252
C_cinerea_okayama_11 AGLACGFTGM A AGYAIGHVGD Site 252
D_hansenii_16 AGLTVGISNL I CGLAVGVTGS Site 252
D_hansenii_11 CGLSVGFACL A SGYSIGIVGD Site 252
C_cinerea_okayama_16 GGLTVGACNL L CGVCVGVTGS Site 252
P_vivax_3 SGLIVGLSSL A AGLAIGIVGD Site 252
C_immitis_3 AGLSVGLAGL A AGFAIGIVGD Site 252
G_zeae_11 CGIAVGMTGL A AGYCIGIVGD Site 252
C_neoformans_3 AGLSVGLAGL A AGFAIGIVGD Site 252
H_sapiens_3 AGLSVGLSGL A AGFAIGIVGD Site 252
G_zeae_16 SGITVGMCNL I CGVAVGINGS Site 252
Y_lipolytica_11 CGLSVGFAAL A SGYAIGIVGD Site 252
M_brevicollis_3 AGLAVGISGL A AGFAIGIVGD Site 252
D_discoideum_3 AGLTVGLCGL A AGMAIGIVGD Site 252
P_stipitis_16 AGITVGLSNL I CGLAVGVTGS Site 252
C_albicans_16 AGLTVGISNL I CGIAVGITGS Site 252
C_albicans_11 CGLAVGFACL A SGYAIGIVGD Site 252
P_stipitis_11 CGLSVGFACL S SGYAIGIVGD Site 252
X_laevis_3 AGLSVGLSGL A AGFAIGIVGD Site 252
C_glabrata_11 CGLCVGFACL S SGYAIGIVGD Site 252
E_caballus_16 AGLTVGLSNL F CGVCVGIVGS Site 252
C_glabrata_16 AGLTVGVSNL I CGVSVGITGA Site 252
V_polyspora_11 CGLCVGFACL S SGYAIGIVGD Site 252
V_polyspora_16 AGLTVGVSNL I CGVAVGITGS Site 252
C_hominis_16 SGLTIGLSNL F SGISVGITGS Site 252
Species Residue at Site 300
in 'msaprobs'
muscle

The residue for every species at site 300 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

C_globosum_11 CGLSVGLTAL A AGYCIGIVGD Site 252
C_globosum_16 AGITVGMCNL I CGVAVGINGS Site 252
O_mordax_16 AGLTVGFSNL F CGICVGIVGS Site 252
D_rerio_16 AGLTVGFSNL F CGICVGIVGS Site 252
B_bovis_3 AGLIVGFSGL A SGLAIGIVGD Site 252
B_floridae_16 AGLTVGMCNL V CGICVGIVGS Site 252
M_musculus_3 AGLSVGLSGL A AGFAIGIVGD Site 252
A_fumigatus_16 GGITVGACNL I CGISVGINGS Site 252
C_familiaris_16 AGLTVGLSNL F CGVCVGIVGS Site 252
K_lactis_11 CGLCVGFACL S SGYAIGIVGD Site 252
K_lactis_16 AGITVGVSNL I CGVAVGITGA Site 252
B_taurus_16 AGLTVGLSNL F CGVCVGIVGS Site 252
S_sclerotiorum_16 SGITVGMCNL I CGVSVGINGS Site 252
S_sclerotiorum_11 CGLSVGLTGL A AGYAIGIVGD Site 252
R_norvegicus_16 AGLTVGLSNL F CGVCVGIVGS Site 252

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