V-ATPase Ancestral Library

If you use these results in your work, please cite: Hanson-Smith and Johnson, PLoS Comp. Bio., 2016


Overview | Alignments | Sites | Trees | Ancestors | Mutations


Select an Alignment:

Select a Site:

Site 299 in Alignment 'msaprobs'


Similarity to Other Alignments

What percentage of the residues at this site are inferred to be a single site (i.e. homologous) in the alignments produced by other methods? A value of 100% indicates that the existence of site 299 is robust across multiple methods. Values less than 100% indicate that other alignment methods made different homology inferences.

Similarity of Site 299 in 'msaprobs'
to Sites in 'muscle'

What percentage of the residues at this site in msaprobs are inferred to be a single site (i.e. homologous) in the alignments produced by muscle? A value of 100% indicates that the existence of site 299 is reproduced using the muscle method. Values less than 100% indicate that muscle made different homology inferences for the residues at this site.


Species Residue at Site 299
in 'msaprobs'
muscle

The residue for every species at site 299 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

M_musculus_16 GAGLTVGLSN L FCGVCVGIVG Site 251
O_mordax_3 GAGLSVGLSG L AAGFAIGIVG Site 251
D_rerio_3 GAGLSVGLSG L AAGFAIGIVG Site 251
M_grisea_16 WSGLTVGACN L ICGVAVGING Site 251
M_grisea_11 ACGLSVGLTG L AAGYCIGIVG Site 251
A_niger_3 GAGLAVGLAG M AAGFAIGIVG Site 251
C_glabrata_3 GAGLSVGLSG L AAGFAIGIVG Site 251
A_terreus_11 ASGLSVGLAG V AAGYTIGTVG Site 251
A_terreus_16 WGGITVGMCN L ICGISVGING Site 251
C_parvum_16 CSGLTIGLSN L FSGISVGITG Site 251
T_adhaerens_3 GAGLSVGLSG L AAGFAIGIVG Site 251
T_castaneum_3 GAGLSVGFSG L AAGFAIGIVG Site 251
X_tropicalis_3 GAGLSVGLSG L AAGFAIGIVG Site 251
G_zeae_3 GAGLSVGLAG L AAGFAIGIVG Site 251
L_elongisporus_3 GAGLSVGLSG L AAGFAIGIVG Site 251
A_fumigatus_3 GAGLAVGLAG M AAGFAIGIVG Site 251
M_grisea_3 GAGLAVGLAG L AAGFAIGIVG Site 251
S_pombe_3 GAGLSVGLAG L AAGFAIGIVG Site 251
C_albicans_3 ACGLAVGFAC L ASGYAIGIVG Site 251
B_bovis_16 AIGLTSGLCN L FCGLSVGAVG Site 251
C_muris_3 SAGLIIGLSC L AAGLAIGIVG Site 251
S_purpuratus_3 GAGLSVGLSG L AAGFAIGIVG Site 251
C_immitis_16 WGGLTVGMCN L ICGVAVGING Site 251
M_mulatta_16 GAGLTVGLSN L FCGVCVGIVG Site 251
Y_lipolytica_3 GAGLSVGLSG L AAGFAIGIVG Site 251
Species Residue at Site 299
in 'msaprobs'
muscle

The residue for every species at site 299 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

B_fuckeliana_16 WSGITVGMCN L ICGVSVGING Site 251
C_immitis_11 AAGLSVGLAG L AAGYTIGIVG Site 251
A_mellifera_16 GAGLAVGLVN L FCGIAVGIVG Site 251
A_gossypii_11 AAGLCVGFAC L SSGYAIGIVG Site 251
T_annulata_16 AVGLIVGFSN L FCGISVGVVG Site 251
N_vectensis_3 GAGLSVGLSG L AAGFAIGIVG Site 251
S_Salar_16 GAGLTVGFSN L FCGICVGIVG Site 251
L_elongisporus_16 WAGLTVGISN L ICGIAVGITG Site 251
C_neoformans_16 WGGLAVGVCN L LCGVSVGITG Site 251
C_neoformans_11 AAGLACGFTG L AAGYAIGIVG Site 251
P_knowlesi_16 ASGLTAGLSN L VSGVSVGITG Site 251
A_terreus_3 GAGLAVGLAG L AAGFAIGIVG Site 251
A_pisum_3 GAGLSVGFSG L AAGFAIGIVG Site 251
S_Salar_3 GAGLSVGLSG L AAGFAIGIVG Site 251
P_marneffei_3 GAGLAVGLAG L AAGFAIGIVG Site 251
P_stipitis_3 GAGLSVGLSG L AAGFAIGIVG Site 251
A_fumigatus_11 ASGLSVGLAG V AAGYTIGIVG Site 251
A_gossypii_3 GAGLSVGLSG L AAGFAIGIVG Site 251
C_hominis_3 AAGLISGFSC A ASGFTIGVAG Site 251
C_muris_16 TSGLTIGLSN L FSGISVGITG Site 251
X_laevis_16 GAGLTVGFSN L FCGICVGIVG Site 251
M_mulatta_3 SAGLRVGPSG L AAGFAVGIVR Site 251
M_brevicollis_16 AGGITTGFCN L VCGVCVGIVG Site 251
K_lactis_3 GAGLSVGLSG L AAGFAIGIVG Site 251
T_castaneum_16 GAGVAVGLVN L FCGIAVGIVG Site 251
Species Residue at Site 299
in 'msaprobs'
muscle

The residue for every species at site 299 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

C_intestinalis_16 GAGLTTGLSN L ACGICVGIVG Site 251
E_caballus_3 GAGLSVGLSG L AAGFAIGIVG Site 251
C_globosum_3 GAGLAVGLAG M AAGFAIGIVG Site 251
A_clavatus_3 GAGLAVGLAG L AAGFAIGIVG Site 251
N_crassa_11 ACGLSVGLTG L AAGYCIGIVG Site 251
N_crassa_16 WAGLTVGMCN L VCGVAVGING Site 251
X_tropicalis_16 GAGLTVGFSN L FCGICVGIVG Site 251
P_anserina_11 ACGLSVGLTG L AAGYCIGVVG Site 251
P_vivax_16 ASGLTAGLSN L VSGVSVGITG Site 251
P_anserina_16 WAGLTVGMCN L VCGVAVGING Site 251
H_sapiens_16 GAGLTVGLSN L FCGVCVGIVG Site 251
T_annulata_3 AAGLVVGLCS L AAGLAIGIVG Site 251
C_intestinalis_3 GAGLSVGLSG L AAGVAIGIVG Site 251
L_elongisporus_11 ACGLSVGFAC L ASGYAIGIVG Site 251
A_gossypii_16 WAGITVGVSN M ICGIAVGITG Site 251
A_pisum_16 AAGISVGLVN L FCGIAVGVVG Site 251
N_crassa_3 GAGLAVGLAG L AAGFAIGIVG Site 251
V_polyspora_3 GAGLSVGLSG L AAGFAIGIVG Site 251
S_cerevisiae_3 GAGLSVGLSG L AAGFAIGIVG Site 251
P_marneffei_16 WGGITVGACN L ICGISVGING Site 251
D_hansenii_3 GAGLSVGLSG L AAGFAIGIVG Site 251
S_pombe_11 SAGLAVGLTG V AAGYAIGVVG Site 251
T_guttata_3 GAGLSVGLSG L AAGFAIGIVG Site 251
S_pombe_16 WGGITVGLCN L ICGVCVGITG Site 251
B_fuckeliana_3 GAGLSVGLAG L AAGFAIGIVG Site 251
Species Residue at Site 299
in 'msaprobs'
muscle

The residue for every species at site 299 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

T_adhaerens_16 AAGLTVGLSN L ACGICVGIVG Site 251
S_cerevisiae_16 WAGITVGASN L ICGIAVGITG Site 251
R_norvegicus_3 GAGLSVGLSG L AAGFAIGIVG Site 251
S_cerevisiae_11 SCGLCVGFAC L SSGYAIGMVG Site 251
B_taurus_3 GAGLSVGLSG L AAGFAIGIVG Site 251
C_familiaris_3 GAGLSVGLSG L AAGFAIGIVG Site 251
P_anserina_3 GAGLSVGLAG M AAGFAIGIVG Site 251
P_marneffei_11 ASGLSVGLAG I AAGYTIGVVG Site 251
P_knowlesi_3 SSGLIVGLSS L AAGLAIGIVG Site 251
T_guttata_16 GAGLTVGLCN L FCGVCVGIVG Site 251
B_fuckeliana_11 ACGLSVGLTG L AAGYAIGVVG Site 251
C_cinerea_okayama_3 GAGLAVGLAG L AAGFAIGIVG Site 251
P_falciparum_16 ASGLTAGLSN L VSGVSVGITG Site 251
N_vectensis_16 GAGMTVGFCN L ACGICVGLVG Site 251
A_niger_11 AAGLSVGLAG V AAGYTIGVVG Site 251
A_niger_16 WGGITVGACN L ICGISVGING Site 251
C_parvum_3 SAGLVIGLSS L AAGLAIGIVG Site 251
S_purpuratus_16 GAGLTVGFTN L ACGICVGIVG Site 251
B_floridae_3 GAGLSVGLSG L AAGFAVGIVG Site 251
Y_lipolytica_16 WAGLTVGLGN L VCGICVGITG Site 251
A_mellifera_3 GAGLAVGFSG L AAGFAIGIVG Site 251
A_clavatus_16 WGGITVGACN L ICGISVGING Site 251
A_clavatus_11 ASGLSVGLAG L AAGYTIGIVG Site 251
S_sclerotiorum_3 GAGLSVGLAG L AAGFAIGIVG Site 251
P_falciparum_3 SSGLIVGLSS L AAGLAIGIVG Site 251
Species Residue at Site 299
in 'msaprobs'
muscle

The residue for every species at site 299 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

D_discoideum_16 GAGITVGLCN V FSGVCVGIAG Site 251
C_cinerea_okayama_11 AAGLACGFTG M AAGYAIGHVG Site 251
D_hansenii_16 WAGLTVGISN L ICGLAVGVTG Site 251
D_hansenii_11 ACGLSVGFAC L ASGYSIGIVG Site 251
C_cinerea_okayama_16 WGGLTVGACN L LCGVCVGVTG Site 251
P_vivax_3 SSGLIVGLSS L AAGLAIGIVG Site 251
C_immitis_3 GAGLSVGLAG L AAGFAIGIVG Site 251
G_zeae_11 GCGIAVGMTG L AAGYCIGIVG Site 251
C_neoformans_3 GAGLSVGLAG L AAGFAIGIVG Site 251
H_sapiens_3 GAGLSVGLSG L AAGFAIGIVG Site 251
G_zeae_16 WSGITVGMCN L ICGVAVGING Site 251
Y_lipolytica_11 ACGLSVGFAA L ASGYAIGIVG Site 251
M_brevicollis_3 GAGLAVGISG L AAGFAIGIVG Site 251
D_discoideum_3 GAGLTVGLCG L AAGMAIGIVG Site 251
P_stipitis_16 WAGITVGLSN L ICGLAVGVTG Site 251
C_albicans_16 WAGLTVGISN L ICGIAVGITG Site 251
C_albicans_11 ACGLAVGFAC L ASGYAIGIVG Site 251
P_stipitis_11 ACGLSVGFAC L SSGYAIGIVG Site 251
X_laevis_3 GAGLSVGLSG L AAGFAIGIVG Site 251
C_glabrata_11 SCGLCVGFAC L SSGYAIGIVG Site 251
E_caballus_16 GAGLTVGLSN L FCGVCVGIVG Site 251
C_glabrata_16 WAGLTVGVSN L ICGVSVGITG Site 251
V_polyspora_11 SCGLCVGFAC L SSGYAIGIVG Site 251
V_polyspora_16 WAGLTVGVSN L ICGVAVGITG Site 251
C_hominis_16 CSGLTIGLSN L FSGISVGITG Site 251
Species Residue at Site 299
in 'msaprobs'
muscle

The residue for every species at site 299 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

C_globosum_11 ACGLSVGLTA L AAGYCIGIVG Site 251
C_globosum_16 WAGITVGMCN L ICGVAVGING Site 251
O_mordax_16 GAGLTVGFSN L FCGICVGIVG Site 251
D_rerio_16 GAGLTVGFSN L FCGICVGIVG Site 251
B_bovis_3 SAGLIVGFSG L ASGLAIGIVG Site 251
B_floridae_16 GAGLTVGMCN L VCGICVGIVG Site 251
M_musculus_3 GAGLSVGLSG L AAGFAIGIVG Site 251
A_fumigatus_16 WGGITVGACN L ICGISVGING Site 251
C_familiaris_16 GAGLTVGLSN L FCGVCVGIVG Site 251
K_lactis_11 SCGLCVGFAC L SSGYAIGIVG Site 251
K_lactis_16 WAGITVGVSN L ICGVAVGITG Site 251
B_taurus_16 GAGLTVGLSN L FCGVCVGIVG Site 251
S_sclerotiorum_16 WSGITVGMCN L ICGVSVGING Site 251
S_sclerotiorum_11 ACGLSVGLTG L AAGYAIGIVG Site 251
R_norvegicus_16 GAGLTVGLSN L FCGVCVGIVG Site 251

Generated by PhyloBot at 16:59, October 30th 2020
Questions/Comments? help@phylobot.com