V-ATPase Ancestral Library

If you use these results in your work, please cite: Hanson-Smith and Johnson, PLoS Comp. Bio., 2016


Overview | Alignments | Sites | Trees | Ancestors | Mutations


Select an Alignment:

Select a Site:

Site 297 in Alignment 'msaprobs'


Similarity to Other Alignments

What percentage of the residues at this site are inferred to be a single site (i.e. homologous) in the alignments produced by other methods? A value of 100% indicates that the existence of site 297 is robust across multiple methods. Values less than 100% indicate that other alignment methods made different homology inferences.

Similarity of Site 297 in 'msaprobs'
to Sites in 'muscle'

What percentage of the residues at this site in msaprobs are inferred to be a single site (i.e. homologous) in the alignments produced by muscle? A value of 100% indicates that the existence of site 297 is reproduced using the muscle method. Values less than 100% indicate that muscle made different homology inferences for the residues at this site.


Species Residue at Site 297
in 'msaprobs'
muscle

The residue for every species at site 297 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

M_musculus_16 MFGAGLTVGL S NLFCGVCVGI Site 249
O_mordax_3 HLGAGLSVGL S GLAAGFAIGI Site 249
D_rerio_3 HLGAGLSVGL S GLAAGFAIGI Site 249
M_grisea_16 LFWSGLTVGA C NLICGVAVGI Site 249
M_grisea_11 HLACGLSVGL T GLAAGYCIGI Site 249
A_niger_3 QLGAGLAVGL A GMAAGFAIGI Site 249
C_glabrata_3 QLGAGLSVGL S GLAAGFAIGI Site 249
A_terreus_11 HLASGLSVGL A GVAAGYTIGT Site 249
A_terreus_16 LFWGGITVGM C NLICGISVGI Site 249
C_parvum_16 LLCSGLTIGL S NLFSGISVGI Site 249
T_adhaerens_3 DLGAGLSVGL S GLAAGFAIGI Site 249
T_castaneum_3 HLGAGLSVGF S GLAAGFAIGI Site 249
X_tropicalis_3 QLGAGLSVGL S GLAAGFAIGI Site 249
G_zeae_3 QFGAGLSVGL A GLAAGFAIGI Site 249
L_elongisporus_3 QLGAGLSVGL S GLAAGFAIGI Site 249
A_fumigatus_3 QLGAGLAVGL A GMAAGFAIGI Site 249
M_grisea_3 QLGAGLAVGL A GLAAGFAIGI Site 249
S_pombe_3 QLGAGLSVGL A GLAAGFAIGI Site 249
C_albicans_3 HLACGLAVGF A CLASGYAIGI Site 249
B_bovis_16 LFAIGLTSGL C NLFCGLSVGA Site 249
C_muris_3 QMSAGLIIGL S CLAAGLAIGI Site 249
S_purpuratus_3 HLGAGLSVGL S GLAAGFAIGI Site 249
C_immitis_16 LFWGGLTVGM C NLICGVAVGI Site 249
M_mulatta_16 MFGAGLTVGL S NLFCGVCVGI Site 249
Y_lipolytica_3 QLGAGLSVGL S GLAAGFAIGI Site 249
Species Residue at Site 297
in 'msaprobs'
muscle

The residue for every species at site 297 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

B_fuckeliana_16 LFWSGITVGM C NLICGVSVGI Site 249
C_immitis_11 HLAAGLSVGL A GLAAGYTIGI Site 249
A_mellifera_16 MFGAGLAVGL V NLFCGIAVGI Site 249
A_gossypii_11 HLAAGLCVGF A CLSSGYAIGI Site 249
T_annulata_16 MLAVGLIVGF S NLFCGISVGV Site 249
N_vectensis_3 DLGAGLSVGL S GLAAGFAIGI Site 249
S_Salar_16 MFGAGLTVGF S NLFCGICVGI Site 249
L_elongisporus_16 LFWAGLTVGI S NLICGIAVGI Site 249
C_neoformans_16 LFWGGLAVGV C NLLCGVSVGI Site 249
C_neoformans_11 HLAAGLACGF T GLAAGYAIGI Site 249
P_knowlesi_16 LFASGLTAGL S NLVSGVSVGI Site 249
A_terreus_3 QLGAGLAVGL A GLAAGFAIGI Site 249
A_pisum_3 HLGAGLSVGF S GLAAGFAIGI Site 249
S_Salar_3 HLGAGLSVGL S GLAAGFAIGI Site 249
P_marneffei_3 QLGAGLAVGL A GLAAGFAIGI Site 249
P_stipitis_3 QLGAGLSVGL S GLAAGFAIGI Site 249
A_fumigatus_11 HLASGLSVGL A GVAAGYTIGI Site 249
A_gossypii_3 QLGAGLSVGL S GLAAGFAIGI Site 249
C_hominis_3 HLAAGLISGF S CAASGFTIGV Site 249
C_muris_16 ILTSGLTIGL S NLFSGISVGI Site 249
X_laevis_16 MFGAGLTVGF S NLFCGICVGI Site 249
M_mulatta_3 QLSAGLRVGP S GLAAGFAVGI Site 249
M_brevicollis_16 LFAGGITTGF C NLVCGVCVGI Site 249
K_lactis_3 QLGAGLSVGL S GLAAGFAIGI Site 249
T_castaneum_16 MFGAGVAVGL V NLFCGIAVGI Site 249
Species Residue at Site 297
in 'msaprobs'
muscle

The residue for every species at site 297 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

C_intestinalis_16 LFGAGLTTGL S NLACGICVGI Site 249
E_caballus_3 QLGAGLSVGL S GLAAGFAIGI Site 249
C_globosum_3 QLGAGLAVGL A GMAAGFAIGI Site 249
A_clavatus_3 QLGAGLAVGL A GLAAGFAIGI Site 249
N_crassa_11 HLACGLSVGL T GLAAGYCIGI Site 249
N_crassa_16 LFWAGLTVGM C NLVCGVAVGI Site 249
X_tropicalis_16 MFGAGLTVGF S NLFCGICVGI Site 249
P_anserina_11 HLACGLSVGL T GLAAGYCIGV Site 249
P_vivax_16 LFASGLTAGL S NLVSGVSVGI Site 249
P_anserina_16 LFWAGLTVGM C NLVCGVAVGI Site 249
H_sapiens_16 MFGAGLTVGL S NLFCGVCVGI Site 249
T_annulata_3 HLAAGLVVGL C SLAAGLAIGI Site 249
C_intestinalis_3 HLGAGLSVGL S GLAAGVAIGI Site 249
L_elongisporus_11 HLACGLSVGF A CLASGYAIGI Site 249
A_gossypii_16 LFWAGITVGV S NMICGIAVGI Site 249
A_pisum_16 IFAAGISVGL V NLFCGIAVGV Site 249
N_crassa_3 QLGAGLAVGL A GLAAGFAIGI Site 249
V_polyspora_3 QLGAGLSVGL S GLAAGFAIGI Site 249
S_cerevisiae_3 QLGAGLSVGL S GLAAGFAIGI Site 249
P_marneffei_16 LFWGGITVGA C NLICGISVGI Site 249
D_hansenii_3 QLGAGLSVGL S GLAAGFAIGI Site 249
S_pombe_11 HLSAGLAVGL T GVAAGYAIGV Site 249
T_guttata_3 QLGAGLSVGL S GLAAGFAIGI Site 249
S_pombe_16 LFWGGITVGL C NLICGVCVGI Site 249
B_fuckeliana_3 QLGAGLSVGL A GLAAGFAIGI Site 249
Species Residue at Site 297
in 'msaprobs'
muscle

The residue for every species at site 297 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

T_adhaerens_16 IFAAGLTVGL S NLACGICVGI Site 249
S_cerevisiae_16 LFWAGITVGA S NLICGIAVGI Site 249
R_norvegicus_3 QLGAGLSVGL S GLAAGFAIGI Site 249
S_cerevisiae_11 HLSCGLCVGF A CLSSGYAIGM Site 249
B_taurus_3 QLGAGLSVGL S GLAAGFAIGI Site 249
C_familiaris_3 QLGAGLSVGL S GLAAGFAIGI Site 249
P_anserina_3 QLGAGLSVGL A GMAAGFAIGI Site 249
P_marneffei_11 HLASGLSVGL A GIAAGYTIGV Site 249
P_knowlesi_3 HLSSGLIVGL S SLAAGLAIGI Site 249
T_guttata_16 MFGAGLTVGL C NLFCGVCVGI Site 249
B_fuckeliana_11 HLACGLSVGL T GLAAGYAIGV Site 249
C_cinerea_okayama_3 QLGAGLAVGL A GLAAGFAIGI Site 249
P_falciparum_16 LFASGLTAGL S NLVSGVSVGI Site 249
N_vectensis_16 IFGAGMTVGF C NLACGICVGL Site 249
A_niger_11 HLAAGLSVGL A GVAAGYTIGV Site 249
A_niger_16 LFWGGITVGA C NLICGISVGI Site 249
C_parvum_3 QMSAGLVIGL S SLAAGLAIGI Site 249
S_purpuratus_16 IFGAGLTVGF T NLACGICVGI Site 249
B_floridae_3 HLGAGLSVGL S GLAAGFAVGI Site 249
Y_lipolytica_16 LFWAGLTVGL G NLVCGICVGI Site 249
A_mellifera_3 HLGAGLAVGF S GLAAGFAIGI Site 249
A_clavatus_16 LFWGGITVGA C NLICGISVGI Site 249
A_clavatus_11 HLASGLSVGL A GLAAGYTIGI Site 249
S_sclerotiorum_3 QLGAGLSVGL A GLAAGFAIGI Site 249
P_falciparum_3 HLSSGLIVGL S SLAAGLAIGI Site 249
Species Residue at Site 297
in 'msaprobs'
muscle

The residue for every species at site 297 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

D_discoideum_16 MFGAGITVGL C NVFSGVCVGI Site 249
C_cinerea_okayama_11 HLAAGLACGF T GMAAGYAIGH Site 249
D_hansenii_16 LFWAGLTVGI S NLICGLAVGV Site 249
D_hansenii_11 HLACGLSVGF A CLASGYSIGI Site 249
C_cinerea_okayama_16 LFWGGLTVGA C NLLCGVCVGV Site 249
P_vivax_3 HLSSGLIVGL S SLAAGLAIGI Site 249
C_immitis_3 QLGAGLSVGL A GLAAGFAIGI Site 249
G_zeae_11 HLGCGIAVGM T GLAAGYCIGI Site 249
C_neoformans_3 QLGAGLSVGL A GLAAGFAIGI Site 249
H_sapiens_3 QLGAGLSVGL S GLAAGFAIGI Site 249
G_zeae_16 LFWSGITVGM C NLICGVAVGI Site 249
Y_lipolytica_11 HLACGLSVGF A ALASGYAIGI Site 249
M_brevicollis_3 HLGAGLAVGI S GLAAGFAIGI Site 249
D_discoideum_3 DLGAGLTVGL C GLAAGMAIGI Site 249
P_stipitis_16 LFWAGITVGL S NLICGLAVGV Site 249
C_albicans_16 LFWAGLTVGI S NLICGIAVGI Site 249
C_albicans_11 HLACGLAVGF A CLASGYAIGI Site 249
P_stipitis_11 HLACGLSVGF A CLSSGYAIGI Site 249
X_laevis_3 QLGAGLSVGL S GLAAGFAIGI Site 249
C_glabrata_11 HLSCGLCVGF A CLSSGYAIGI Site 249
E_caballus_16 MFGAGLTVGL S NLFCGVCVGI Site 249
C_glabrata_16 LFWAGLTVGV S NLICGVSVGI Site 249
V_polyspora_11 HLSCGLCVGF A CLSSGYAIGI Site 249
V_polyspora_16 LFWAGLTVGV S NLICGVAVGI Site 249
C_hominis_16 LLCSGLTIGL S NLFSGISVGI Site 249
Species Residue at Site 297
in 'msaprobs'
muscle

The residue for every species at site 297 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

C_globosum_11 HLACGLSVGL T ALAAGYCIGI Site 249
C_globosum_16 LFWAGITVGM C NLICGVAVGI Site 249
O_mordax_16 MFGAGLTVGF S NLFCGICVGI Site 249
D_rerio_16 MFGAGLTVGF S NLFCGICVGI Site 249
B_bovis_3 HLSAGLIVGF S GLASGLAIGI Site 249
B_floridae_16 LFGAGLTVGM C NLVCGICVGI Site 249
M_musculus_3 QLGAGLSVGL S GLAAGFAIGI Site 249
A_fumigatus_16 LFWGGITVGA C NLICGISVGI Site 249
C_familiaris_16 MFGAGLTVGL S NLFCGVCVGI Site 249
K_lactis_11 HLSCGLCVGF A CLSSGYAIGI Site 249
K_lactis_16 IFWAGITVGV S NLICGVAVGI Site 249
B_taurus_16 MFGAGLTVGL S NLFCGVCVGI Site 249
S_sclerotiorum_16 LFWSGITVGM C NLICGVSVGI Site 249
S_sclerotiorum_11 HLACGLSVGL T GLAAGYAIGI Site 249
R_norvegicus_16 MFGAGLTVGL S NLFCGVCVGI Site 249

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