V-ATPase Ancestral Library

If you use these results in your work, please cite: Hanson-Smith and Johnson, PLoS Comp. Bio., 2016


Overview | Alignments | Sites | Trees | Ancestors | Mutations


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Select a Site:

Site 294 in Alignment 'msaprobs'


Similarity to Other Alignments

What percentage of the residues at this site are inferred to be a single site (i.e. homologous) in the alignments produced by other methods? A value of 100% indicates that the existence of site 294 is robust across multiple methods. Values less than 100% indicate that other alignment methods made different homology inferences.

Similarity of Site 294 in 'msaprobs'
to Sites in 'muscle'

What percentage of the residues at this site in msaprobs are inferred to be a single site (i.e. homologous) in the alignments produced by muscle? A value of 100% indicates that the existence of site 294 is reproduced using the muscle method. Values less than 100% indicate that muscle made different homology inferences for the residues at this site.


Species Residue at Site 294
in 'msaprobs'
muscle

The residue for every species at site 294 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

M_musculus_16 GYSMFGAGLT V GLSNLFCGVC Site 246
O_mordax_3 SFLHLGAGLS V GLSGLAAGFA Site 246
D_rerio_3 SFLHLGAGLS V GLSGLAAGFA Site 246
M_grisea_16 GYALFWSGLT V GACNLICGVA Site 246
M_grisea_11 GIMHLACGLS V GLTGLAAGYC Site 246
A_niger_3 GFIQLGAGLA V GLAGMAAGFA Site 246
C_glabrata_3 GFVQLGAGLS V GLSGLAAGFA Site 246
A_terreus_11 GFMHLASGLS V GLAGVAAGYT Site 246
A_terreus_16 GFALFWGGIT V GMCNLICGIS Site 246
C_parvum_16 SWILLCSGLT I GLSNLFSGIS Site 246
T_adhaerens_3 SFVDLGAGLS V GLSGLAAGFA Site 246
T_castaneum_3 GFVHLGAGLS V GFSGLAAGFA Site 246
X_tropicalis_3 SFLQLGAGLS V GLSGLAAGFA Site 246
G_zeae_3 SFIQFGAGLS V GLAGLAAGFA Site 246
L_elongisporus_3 GFIQLGAGLS V GLSGLAAGFA Site 246
A_fumigatus_3 GFIQLGAGLA V GLAGMAAGFA Site 246
M_grisea_3 GFIQLGAGLA V GLAGLAAGFA Site 246
S_pombe_3 GFIQLGAGLS V GLAGLAAGFA Site 246
C_albicans_3 GCMHLACGLA V GFACLASGYA Site 246
B_bovis_16 GYVLFAIGLT S GLCNLFCGLS Site 246
C_muris_3 AYAQMSAGLI I GLSCLAAGLA Site 246
S_purpuratus_3 SFMHLGAGLS V GLSGLAAGFA Site 246
C_immitis_16 GYALFWGGLT V GMCNLICGVA Site 246
M_mulatta_16 GYSMFGAGLT V GLSNLFCGVC Site 246
Y_lipolytica_3 GFIQLGAGLS V GLSGLAAGFA Site 246
Species Residue at Site 294
in 'msaprobs'
muscle

The residue for every species at site 294 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

B_fuckeliana_16 GYALFWSGIT V GMCNLICGVS Site 246
C_immitis_11 GFVHLAAGLS V GLAGLAAGYT Site 246
A_mellifera_16 GYLMFGAGLA V GLVNLFCGIA Site 246
A_gossypii_11 GFMHLAAGLC V GFACLSSGYA Site 246
T_annulata_16 GYSMLAVGLI V GFSNLFCGIS Site 246
N_vectensis_3 SFLDLGAGLS V GLSGLAAGFA Site 246
S_Salar_16 GYSMFGAGLT V GFSNLFCGIC Site 246
L_elongisporus_16 GYSLFWAGLT V GISNLICGIA Site 246
C_neoformans_16 GFALFWGGLA V GVCNLLCGVS Site 246
C_neoformans_11 GFVHLAAGLA C GFTGLAAGYA Site 246
P_knowlesi_16 GWALFASGLT A GLSNLVSGVS Site 246
A_terreus_3 GFIQLGAGLA V GLAGLAAGFA Site 246
A_pisum_3 GFIHLGAGLS V GFSGLAAGFA Site 246
S_Salar_3 SFLHLGAGLS V GLSGLAAGFA Site 246
P_marneffei_3 GFIQLGAGLA V GLAGLAAGFA Site 246
P_stipitis_3 GFIQLGAGLS V GLSGLAAGFA Site 246
A_fumigatus_11 GFMHLASGLS V GLAGVAAGYT Site 246
A_gossypii_3 GFIQLGAGLS V GLSGLAAGFA Site 246
C_hominis_3 GYCHLAAGLI S GFSCAASGFT Site 246
C_muris_16 SWIILTSGLT I GLSNLFSGIS Site 246
X_laevis_16 GFSMFGAGLT V GFSNLFCGIC Site 246
M_mulatta_3 SSLQLSAGLR V GPSGLAAGFA Site 246
M_brevicollis_16 GYALFAGGIT T GFCNLVCGVC Site 246
K_lactis_3 GFIQLGAGLS V GLSGLAAGFA Site 246
T_castaneum_16 GYSMFGAGVA V GLVNLFCGIA Site 246
Species Residue at Site 294
in 'msaprobs'
muscle

The residue for every species at site 294 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

C_intestinalis_16 GYALFGAGLT T GLSNLACGIC Site 246
E_caballus_3 SFLQLGAGLS V GLSGLAAGFA Site 246
C_globosum_3 GFIQLGAGLA V GLAGMAAGFA Site 246
A_clavatus_3 GFIQLGAGLA V GLAGLAAGFA Site 246
N_crassa_11 GFMHLACGLS V GLTGLAAGYC Site 246
N_crassa_16 GFALFWAGLT V GMCNLVCGVA Site 246
X_tropicalis_16 GFSMFGAGLT V GFSNLFCGIC Site 246
P_anserina_11 GFMHLACGLS V GLTGLAAGYC Site 246
P_vivax_16 GWALFASGLT A GLSNLVSGVS Site 246
P_anserina_16 GYALFWAGLT V GMCNLVCGVA Site 246
H_sapiens_16 GYSMFGAGLT V GLSNLFCGVC Site 246
T_annulata_3 GYSHLAAGLV V GLCSLAAGLA Site 246
C_intestinalis_3 AFLHLGAGLS V GLSGLAAGVA Site 246
L_elongisporus_11 GFMHLACGLS V GFACLASGYA Site 246
A_gossypii_16 GYSLFWAGIT V GVSNMICGIA Site 246
A_pisum_16 GYLIFAAGIS V GLVNLFCGIA Site 246
N_crassa_3 GFIQLGAGLA V GLAGLAAGFA Site 246
V_polyspora_3 GFIQLGAGLS V GLSGLAAGFA Site 246
S_cerevisiae_3 GFIQLGAGLS V GLSGLAAGFA Site 246
P_marneffei_16 GFSLFWGGIT V GACNLICGIS Site 246
D_hansenii_3 GFIQLGAGLS V GLSGLAAGFA Site 246
S_pombe_11 GFIHLSAGLA V GLTGVAAGYA Site 246
T_guttata_3 SFLQLGAGLS V GLSGLAAGFA Site 246
S_pombe_16 GFALFWGGIT V GLCNLICGVC Site 246
B_fuckeliana_3 GFIQLGAGLS V GLAGLAAGFA Site 246
Species Residue at Site 294
in 'msaprobs'
muscle

The residue for every species at site 294 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

T_adhaerens_16 GYSIFAAGLT V GLSNLACGIC Site 246
S_cerevisiae_16 GYSLFWAGIT V GASNLICGIA Site 246
R_norvegicus_3 SFLQLGAGLS V GLSGLAAGFA Site 246
S_cerevisiae_11 GFMHLSCGLC V GFACLSSGYA Site 246
B_taurus_3 SFLQLGAGLS V GLSGLAAGFA Site 246
C_familiaris_3 SFLQLGAGLS V GLSGLAAGFA Site 246
P_anserina_3 GFVQLGAGLS V GLAGMAAGFA Site 246
P_marneffei_11 SFMHLASGLS V GLAGIAAGYT Site 246
P_knowlesi_3 GYTHLSSGLI V GLSSLAAGLA Site 246
T_guttata_16 GFSMFGAGLT V GLCNLFCGVC Site 246
B_fuckeliana_11 GFMHLACGLS V GLTGLAAGYA Site 246
C_cinerea_okayama_3 GFIQLGAGLA V GLAGLAAGFA Site 246
P_falciparum_16 GWALFASGLT A GLSNLVSGVS Site 246
N_vectensis_16 GYKIFGAGMT V GFCNLACGIC Site 246
A_niger_11 GFMHLAAGLS V GLAGVAAGYT Site 246
A_niger_16 GYALFWGGIT V GACNLICGIS Site 246
C_parvum_3 AYAQMSAGLV I GLSSLAAGLA Site 246
S_purpuratus_16 GYAIFGAGLT V GFTNLACGIC Site 246
B_floridae_3 SFLHLGAGLS V GLSGLAAGFA Site 246
Y_lipolytica_16 GFSLFWAGLT V GLGNLVCGIC Site 246
A_mellifera_3 GFVHLGAGLA V GFSGLAAGFA Site 246
A_clavatus_16 GYALFWGGIT V GACNLICGIS Site 246
A_clavatus_11 GFMHLASGLS V GLAGLAAGYT Site 246
S_sclerotiorum_3 GFIQLGAGLS V GLAGLAAGFA Site 246
P_falciparum_3 GYAHLSSGLI V GLSSLAAGLA Site 246
Species Residue at Site 294
in 'msaprobs'
muscle

The residue for every species at site 294 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

D_discoideum_16 GYMMFGAGIT V GLCNVFSGVC Site 246
C_cinerea_okayama_11 GFVHLAAGLA C GFTGMAAGYA Site 246
D_hansenii_16 GYSLFWAGLT V GISNLICGLA Site 246
D_hansenii_11 GFMHLACGLS V GFACLASGYS Site 246
C_cinerea_okayama_16 GFALFWGGLT V GACNLLCGVC Site 246
P_vivax_3 GYTHLSSGLI V GLSSLAAGLA Site 246
C_immitis_3 GFIQLGAGLS V GLAGLAAGFA Site 246
G_zeae_11 GFMHLGCGIA V GMTGLAAGYC Site 246
C_neoformans_3 GFIQLGAGLS V GLAGLAAGFA Site 246
H_sapiens_3 SFLQLGAGLS V GLSGLAAGFA Site 246
G_zeae_16 GYALFWSGIT V GMCNLICGVA Site 246
Y_lipolytica_11 GFMHLACGLS V GFAALASGYA Site 246
M_brevicollis_3 GFIHLGAGLA V GISGLAAGFA Site 246
D_discoideum_3 SFTDLGAGLT V GLCGLAAGMA Site 246
P_stipitis_16 GYSLFWAGIT V GLSNLICGLA Site 246
C_albicans_16 GYSLFWAGLT V GISNLICGIA Site 246
C_albicans_11 GCMHLACGLA V GFACLASGYA Site 246
P_stipitis_11 GIMHLACGLS V GFACLSSGYA Site 246
X_laevis_3 SFLQLGAGLS V GLSGLAAGFA Site 246
C_glabrata_11 GFMHLSCGLC V GFACLSSGYA Site 246
E_caballus_16 GYSMFGAGLT V GLSNLFCGVC Site 246
C_glabrata_16 GYSLFWAGLT V GVSNLICGVS Site 246
V_polyspora_11 GFMHLSCGLC V GFACLSSGYA Site 246
V_polyspora_16 GYSLFWAGLT V GVSNLICGVA Site 246
C_hominis_16 SWILLCSGLT I GLSNLFSGIS Site 246
Species Residue at Site 294
in 'msaprobs'
muscle

The residue for every species at site 294 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

C_globosum_11 GFMHLACGLS V GLTALAAGYC Site 246
C_globosum_16 GYALFWAGIT V GMCNLICGVA Site 246
O_mordax_16 GYSMFGAGLT V GFSNLFCGIC Site 246
D_rerio_16 GYSMFGAGLT V GFSNLFCGIC Site 246
B_bovis_3 GYSHLSAGLI V GFSGLASGLA Site 246
B_floridae_16 GFSLFGAGLT V GMCNLVCGIC Site 246
M_musculus_3 SFLQLGAGLS V GLSGLAAGFA Site 246
A_fumigatus_16 GYALFWGGIT V GACNLICGIS Site 246
C_familiaris_16 GYSMFGAGLT V GLSNLFCGVC Site 246
K_lactis_11 GFMHLSCGLC V GFACLSSGYA Site 246
K_lactis_16 GYSIFWAGIT V GVSNLICGVA Site 246
B_taurus_16 GYSMFGAGLT V GLSNLFCGVC Site 246
S_sclerotiorum_16 GYALFWSGIT V GMCNLICGVS Site 246
S_sclerotiorum_11 GFMHLACGLS V GLTGLAAGYA Site 246
R_norvegicus_16 GYSMFGAGLT V GLSNLFCGVC Site 246

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