V-ATPase Ancestral Library

If you use these results in your work, please cite: Hanson-Smith and Johnson, PLoS Comp. Bio., 2016


Overview | Alignments | Sites | Trees | Ancestors | Mutations


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Select a Site:

Site 292 in Alignment 'msaprobs'


Similarity to Other Alignments

What percentage of the residues at this site are inferred to be a single site (i.e. homologous) in the alignments produced by other methods? A value of 100% indicates that the existence of site 292 is robust across multiple methods. Values less than 100% indicate that other alignment methods made different homology inferences.

Similarity of Site 292 in 'msaprobs'
to Sites in 'muscle'

What percentage of the residues at this site in msaprobs are inferred to be a single site (i.e. homologous) in the alignments produced by muscle? A value of 100% indicates that the existence of site 292 is reproduced using the muscle method. Values less than 100% indicate that muscle made different homology inferences for the residues at this site.


Species Residue at Site 292
in 'msaprobs'
muscle

The residue for every species at site 292 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

M_musculus_16 HAGYSMFGAG L TVGLSNLFCG Site 244
O_mordax_3 YKSFLHLGAG L SVGLSGLAAG Site 244
D_rerio_3 YKSFLHLGAG L SVGLSGLAAG Site 244
M_grisea_16 FTGYALFWSG L TVGACNLICG Site 244
M_grisea_11 FRGIMHLACG L SVGLTGLAAG Site 244
A_niger_3 YTGFIQLGAG L AVGLAGMAAG Site 244
C_glabrata_3 YTGFVQLGAG L SVGLSGLAAG Site 244
A_terreus_11 YTGFMHLASG L SVGLAGVAAG Site 244
A_terreus_16 YTGFALFWGG I TVGMCNLICG Site 244
C_parvum_16 KSSWILLCSG L TIGLSNLFSG Site 244
T_adhaerens_3 FMSFVDLGAG L SVGLSGLAAG Site 244
T_castaneum_3 YKGFVHLGAG L SVGFSGLAAG Site 244
X_tropicalis_3 YKSFLQLGAG L SVGLSGLAAG Site 244
G_zeae_3 FTSFIQFGAG L SVGLAGLAAG Site 244
L_elongisporus_3 YTGFIQLGAG L SVGLSGLAAG Site 244
A_fumigatus_3 YTGFIQLGAG L AVGLAGMAAG Site 244
M_grisea_3 FTGFIQLGAG L AVGLAGLAAG Site 244
S_pombe_3 YSGFIQLGAG L SVGLAGLAAG Site 244
C_albicans_3 FNGCMHLACG L AVGFACLASG Site 244
B_bovis_16 HRGYVLFAIG L TSGLCNLFCG Site 244
C_muris_3 YLAYAQMSAG L IIGLSCLAAG Site 244
S_purpuratus_3 YKSFMHLGAG L SVGLSGLAAG Site 244
C_immitis_16 YTGYALFWGG L TVGMCNLICG Site 244
M_mulatta_16 HAGYSMFGAG L TVGLSNLFCG Site 244
Y_lipolytica_3 YAGFIQLGAG L SVGLSGLAAG Site 244
Species Residue at Site 292
in 'msaprobs'
muscle

The residue for every species at site 292 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

B_fuckeliana_16 YTGYALFWSG I TVGMCNLICG Site 244
C_immitis_11 YAGFVHLAAG L SVGLAGLAAG Site 244
A_mellifera_16 FAGYLMFGAG L AVGLVNLFCG Site 244
A_gossypii_11 FNGFMHLAAG L CVGFACLSSG Site 244
T_annulata_16 FRGYSMLAVG L IVGFSNLFCG Site 244
N_vectensis_3 YKSFLDLGAG L SVGLSGLAAG Site 244
S_Salar_16 QAGYSMFGAG L TVGFSNLFCG Site 244
L_elongisporus_16 YTGYSLFWAG L TVGISNLICG Site 244
C_neoformans_16 YTGFALFWGG L AVGVCNLLCG Site 244
C_neoformans_11 FAGFVHLAAG L ACGFTGLAAG Site 244
P_knowlesi_16 RGGWALFASG L TAGLSNLVSG Site 244
A_terreus_3 YTGFIQLGAG L AVGLAGLAAG Site 244
A_pisum_3 FKGFIHLGAG L SVGFSGLAAG Site 244
S_Salar_3 YKSFLHLGAG L SVGLSGLAAG Site 244
P_marneffei_3 YTGFIQLGAG L AVGLAGLAAG Site 244
P_stipitis_3 YSGFIQLGAG L SVGLSGLAAG Site 244
A_fumigatus_11 SLGFMHLASG L SVGLAGVAAG Site 244
A_gossypii_3 YTGFIQLGAG L SVGLSGLAAG Site 244
C_hominis_3 YQGYCHLAAG L ISGFSCAASG Site 244
C_muris_16 QASWIILTSG L TIGLSNLFSG Site 244
X_laevis_16 HAGFSMFGAG L TVGFSNLFCG Site 244
M_mulatta_3 YRSSLQLSAG L RVGPSGLAAG Site 244
M_brevicollis_16 STGYALFAGG I TTGFCNLVCG Site 244
K_lactis_3 YTGFIQLGAG L SVGLSGLAAG Site 244
T_castaneum_16 LAGYSMFGAG V AVGLVNLFCG Site 244
Species Residue at Site 292
in 'msaprobs'
muscle

The residue for every species at site 292 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

C_intestinalis_16 FAGYALFGAG L TTGLSNLACG Site 244
E_caballus_3 YRSFLQLGAG L SVGLSGLAAG Site 244
C_globosum_3 YTGFIQLGAG L AVGLAGMAAG Site 244
A_clavatus_3 YTGFIQLGAG L AVGLAGLAAG Site 244
N_crassa_11 FNGFMHLACG L SVGLTGLAAG Site 244
N_crassa_16 YTGFALFWAG L TVGMCNLVCG Site 244
X_tropicalis_16 HAGFSMFGAG L TVGFSNLFCG Site 244
P_anserina_11 FNGFMHLACG L SVGLTGLAAG Site 244
P_vivax_16 RGGWALFASG L TAGLSNLVSG Site 244
P_anserina_16 FTGYALFWAG L TVGMCNLVCG Site 244
H_sapiens_16 HAGYSMFGAG L TVGLSNLFCG Site 244
T_annulata_3 FLGYSHLAAG L VVGLCSLAAG Site 244
C_intestinalis_3 FAAFLHLGAG L SVGLSGLAAG Site 244
L_elongisporus_11 FNGFMHLACG L SVGFACLASG Site 244
A_gossypii_16 YTGYSLFWAG I TVGVSNMICG Site 244
A_pisum_16 MAGYLIFAAG I SVGLVNLFCG Site 244
N_crassa_3 YTGFIQLGAG L AVGLAGLAAG Site 244
V_polyspora_3 YTGFIQLGAG L SVGLSGLAAG Site 244
S_cerevisiae_3 YTGFIQLGAG L SVGLSGLAAG Site 244
P_marneffei_16 YTGFSLFWGG I TVGACNLICG Site 244
D_hansenii_3 YTGFIQLGAG L SVGLSGLAAG Site 244
S_pombe_11 FSGFIHLSAG L AVGLTGVAAG Site 244
T_guttata_3 FKSFLQLGAG L SVGLSGLAAG Site 244
S_pombe_16 YTGFALFWGG I TVGLCNLICG Site 244
B_fuckeliana_3 YTGFIQLGAG L SVGLAGLAAG Site 244
Species Residue at Site 292
in 'msaprobs'
muscle

The residue for every species at site 292 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

T_adhaerens_16 FGGYSIFAAG L TVGLSNLACG Site 244
S_cerevisiae_16 YTGYSLFWAG I TVGASNLICG Site 244
R_norvegicus_3 YRSFLQLGAG L SVGLSGLAAG Site 244
S_cerevisiae_11 FNGFMHLSCG L CVGFACLSSG Site 244
B_taurus_3 YRSFLQLGAG L SVGLSGLAAG Site 244
C_familiaris_3 YRSFLQLGAG L SVGLSGLAAG Site 244
P_anserina_3 YTGFVQLGAG L SVGLAGMAAG Site 244
P_marneffei_11 YTSFMHLASG L SVGLAGIAAG Site 244
P_knowlesi_3 FSGYTHLSSG L IVGLSSLAAG Site 244
T_guttata_16 HAGFSMFGAG L TVGLCNLFCG Site 244
B_fuckeliana_11 FNGFMHLACG L SVGLTGLAAG Site 244
C_cinerea_okayama_3 AQGFIQLGAG L AVGLAGLAAG Site 244
P_falciparum_16 RGGWALFASG L TAGLSNLVSG Site 244
N_vectensis_16 TAGYKIFGAG M TVGFCNLACG Site 244
A_niger_11 YTGFMHLAAG L SVGLAGVAAG Site 244
A_niger_16 YTGYALFWGG I TVGACNLICG Site 244
C_parvum_3 YTAYAQMSAG L VIGLSSLAAG Site 244
S_purpuratus_16 LAGYAIFGAG L TVGFTNLACG Site 244
B_floridae_3 YRSFLHLGAG L SVGLSGLAAG Site 244
Y_lipolytica_16 YTGFSLFWAG L TVGLGNLVCG Site 244
A_mellifera_3 FKGFVHLGAG L AVGFSGLAAG Site 244
A_clavatus_16 YTGYALFWGG I TVGACNLICG Site 244
A_clavatus_11 YTGFMHLASG L SVGLAGLAAG Site 244
S_sclerotiorum_3 YTGFIQLGAG L SVGLAGLAAG Site 244
P_falciparum_3 FAGYAHLSSG L IVGLSSLAAG Site 244
Species Residue at Site 292
in 'msaprobs'
muscle

The residue for every species at site 292 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

D_discoideum_16 MAGYMMFGAG I TVGLCNVFSG Site 244
C_cinerea_okayama_11 FAGFVHLAAG L ACGFTGMAAG Site 244
D_hansenii_16 YTGYSLFWAG L TVGISNLICG Site 244
D_hansenii_11 FNGFMHLACG L SVGFACLASG Site 244
C_cinerea_okayama_16 YTGFALFWGG L TVGACNLLCG Site 244
P_vivax_3 FSGYTHLSSG L IVGLSSLAAG Site 244
C_immitis_3 YTGFIQLGAG L SVGLAGLAAG Site 244
G_zeae_11 FSGFMHLGCG I AVGMTGLAAG Site 244
C_neoformans_3 YTGFIQLGAG L SVGLAGLAAG Site 244
H_sapiens_3 YKSFLQLGAG L SVGLSGLAAG Site 244
G_zeae_16 YTGYALFWSG I TVGMCNLICG Site 244
Y_lipolytica_11 FNGFMHLACG L SVGFAALASG Site 244
M_brevicollis_3 FNGFIHLGAG L AVGISGLAAG Site 244
D_discoideum_3 MKSFTDLGAG L TVGLCGLAAG Site 244
P_stipitis_16 YTGYSLFWAG I TVGLSNLICG Site 244
C_albicans_16 YTGYSLFWAG L TVGISNLICG Site 244
C_albicans_11 FNGCMHLACG L AVGFACLASG Site 244
P_stipitis_11 FNGIMHLACG L SVGFACLSSG Site 244
X_laevis_3 YKSFLQLGAG L SVGLSGLAAG Site 244
C_glabrata_11 FNGFMHLSCG L CVGFACLSSG Site 244
E_caballus_16 HAGYSMFGAG L TVGLSNLFCG Site 244
C_glabrata_16 YTGYSLFWAG L TVGVSNLICG Site 244
V_polyspora_11 FNGFMHLSCG L CVGFACLSSG Site 244
V_polyspora_16 YTGYSLFWAG L TVGVSNLICG Site 244
C_hominis_16 KSSWILLCSG L TIGLSNLFSG Site 244
Species Residue at Site 292
in 'msaprobs'
muscle

The residue for every species at site 292 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

C_globosum_11 FNGFMHLACG L SVGLTALAAG Site 244
C_globosum_16 YTGYALFWAG I TVGMCNLICG Site 244
O_mordax_16 QAGYSMFGAG L TVGFSNLFCG Site 244
D_rerio_16 QAGYSMFGAG L TVGFSNLFCG Site 244
B_bovis_3 YAGYSHLSAG L IVGFSGLASG Site 244
B_floridae_16 MAGFSLFGAG L TVGMCNLVCG Site 244
M_musculus_3 YRSFLQLGAG L SVGLSGLAAG Site 244
A_fumigatus_16 YTGYALFWGG I TVGACNLICG Site 244
C_familiaris_16 HAGYSMFGAG L TVGLSNLFCG Site 244
K_lactis_11 FNGFMHLSCG L CVGFACLSSG Site 244
K_lactis_16 YTGYSIFWAG I TVGVSNLICG Site 244
B_taurus_16 HAGYSMFGAG L TVGLSNLFCG Site 244
S_sclerotiorum_16 YTGYALFWSG I TVGMCNLICG Site 244
S_sclerotiorum_11 FNGFMHLACG L SVGLTGLAAG Site 244
R_norvegicus_16 HAGYSMFGAG L TVGLSNLFCG Site 244

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