V-ATPase Ancestral Library

If you use these results in your work, please cite: Hanson-Smith and Johnson, PLoS Comp. Bio., 2016


Overview | Alignments | Sites | Trees | Ancestors | Mutations


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Select a Site:

Site 291 in Alignment 'msaprobs'


Similarity to Other Alignments

What percentage of the residues at this site are inferred to be a single site (i.e. homologous) in the alignments produced by other methods? A value of 100% indicates that the existence of site 291 is robust across multiple methods. Values less than 100% indicate that other alignment methods made different homology inferences.

Similarity of Site 291 in 'msaprobs'
to Sites in 'muscle'

What percentage of the residues at this site in msaprobs are inferred to be a single site (i.e. homologous) in the alignments produced by muscle? A value of 100% indicates that the existence of site 291 is reproduced using the muscle method. Values less than 100% indicate that muscle made different homology inferences for the residues at this site.


Species Residue at Site 291
in 'msaprobs'
muscle

The residue for every species at site 291 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

M_musculus_16 YHAGYSMFGA G LTVGLSNLFC Site 243
O_mordax_3 LYKSFLHLGA G LSVGLSGLAA Site 243
D_rerio_3 LYKSFLHLGA G LSVGLSGLAA Site 243
M_grisea_16 YFTGYALFWS G LTVGACNLIC Site 243
M_grisea_11 LFRGIMHLAC G LSVGLTGLAA Site 243
A_niger_3 LYTGFIQLGA G LAVGLAGMAA Site 243
C_glabrata_3 LYTGFVQLGA G LSVGLSGLAA Site 243
A_terreus_11 LYTGFMHLAS G LSVGLAGVAA Site 243
A_terreus_16 YYTGFALFWG G ITVGMCNLIC Site 243
C_parvum_16 VKSSWILLCS G LTIGLSNLFS Site 243
T_adhaerens_3 LFMSFVDLGA G LSVGLSGLAA Site 243
T_castaneum_3 LYKGFVHLGA G LSVGFSGLAA Site 243
X_tropicalis_3 LYKSFLQLGA G LSVGLSGLAA Site 243
G_zeae_3 LFTSFIQFGA G LSVGLAGLAA Site 243
L_elongisporus_3 LYTGFIQLGA G LSVGLSGLAA Site 243
A_fumigatus_3 LYTGFIQLGA G LAVGLAGMAA Site 243
M_grisea_3 LFTGFIQLGA G LAVGLAGLAA Site 243
S_pombe_3 LYSGFIQLGA G LSVGLAGLAA Site 243
C_albicans_3 LFNGCMHLAC G LAVGFACLAS Site 243
B_bovis_16 VHRGYVLFAI G LTSGLCNLFC Site 243
C_muris_3 SYLAYAQMSA G LIIGLSCLAA Site 243
S_purpuratus_3 LYKSFMHLGA G LSVGLSGLAA Site 243
C_immitis_16 YYTGYALFWG G LTVGMCNLIC Site 243
M_mulatta_16 YHAGYSMFGA G LTVGLSNLFC Site 243
Y_lipolytica_3 LYAGFIQLGA G LSVGLSGLAA Site 243
Species Residue at Site 291
in 'msaprobs'
muscle

The residue for every species at site 291 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

B_fuckeliana_16 YYTGYALFWS G ITVGMCNLIC Site 243
C_immitis_11 LYAGFVHLAA G LSVGLAGLAA Site 243
A_mellifera_16 WFAGYLMFGA G LAVGLVNLFC Site 243
A_gossypii_11 LFNGFMHLAA G LCVGFACLSS Site 243
T_annulata_16 LFRGYSMLAV G LIVGFSNLFC Site 243
N_vectensis_3 LYKSFLDLGA G LSVGLSGLAA Site 243
S_Salar_16 YQAGYSMFGA G LTVGFSNLFC Site 243
L_elongisporus_16 LYTGYSLFWA G LTVGISNLIC Site 243
C_neoformans_16 YYTGFALFWG G LAVGVCNLLC Site 243
C_neoformans_11 LFAGFVHLAA G LACGFTGLAA Site 243
P_knowlesi_16 IRGGWALFAS G LTAGLSNLVS Site 243
A_terreus_3 LYTGFIQLGA G LAVGLAGLAA Site 243
A_pisum_3 LFKGFIHLGA G LSVGFSGLAA Site 243
S_Salar_3 LYKSFLHLGA G LSVGLSGLAA Site 243
P_marneffei_3 LYTGFIQLGA G LAVGLAGLAA Site 243
P_stipitis_3 LYSGFIQLGA G LSVGLSGLAA Site 243
A_fumigatus_11 MSLGFMHLAS G LSVGLAGVAA Site 243
A_gossypii_3 LYTGFIQLGA G LSVGLSGLAA Site 243
C_hominis_3 LYQGYCHLAA G LISGFSCAAS Site 243
C_muris_16 IQASWIILTS G LTIGLSNLFS Site 243
X_laevis_16 YHAGFSMFGA G LTVGFSNLFC Site 243
M_mulatta_3 LYRSSLQLSA G LRVGPSGLAA Site 243
M_brevicollis_16 ASTGYALFAG G ITTGFCNLVC Site 243
K_lactis_3 LYTGFIQLGA G LSVGLSGLAA Site 243
T_castaneum_16 WLAGYSMFGA G VAVGLVNLFC Site 243
Species Residue at Site 291
in 'msaprobs'
muscle

The residue for every species at site 291 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

C_intestinalis_16 IFAGYALFGA G LTTGLSNLAC Site 243
E_caballus_3 LYRSFLQLGA G LSVGLSGLAA Site 243
C_globosum_3 LYTGFIQLGA G LAVGLAGMAA Site 243
A_clavatus_3 LYTGFIQLGA G LAVGLAGLAA Site 243
N_crassa_11 LFNGFMHLAC G LSVGLTGLAA Site 243
N_crassa_16 YYTGFALFWA G LTVGMCNLVC Site 243
X_tropicalis_16 YHAGFSMFGA G LTVGFSNLFC Site 243
P_anserina_11 LFNGFMHLAC G LSVGLTGLAA Site 243
P_vivax_16 IRGGWALFAS G LTAGLSNLVS Site 243
P_anserina_16 YFTGYALFWA G LTVGMCNLVC Site 243
H_sapiens_16 YHAGYSMFGA G LTVGLSNLFC Site 243
T_annulata_3 HFLGYSHLAA G LVVGLCSLAA Site 243
C_intestinalis_3 LFAAFLHLGA G LSVGLSGLAA Site 243
L_elongisporus_11 LFNGFMHLAC G LSVGFACLAS Site 243
A_gossypii_16 LYTGYSLFWA G ITVGVSNMIC Site 243
A_pisum_16 WMAGYLIFAA G ISVGLVNLFC Site 243
N_crassa_3 LYTGFIQLGA G LAVGLAGLAA Site 243
V_polyspora_3 LYTGFIQLGA G LSVGLSGLAA Site 243
S_cerevisiae_3 LYTGFIQLGA G LSVGLSGLAA Site 243
P_marneffei_16 MYTGFSLFWG G ITVGACNLIC Site 243
D_hansenii_3 LYTGFIQLGA G LSVGLSGLAA Site 243
S_pombe_11 LFSGFIHLSA G LAVGLTGVAA Site 243
T_guttata_3 LFKSFLQLGA G LSVGLSGLAA Site 243
S_pombe_16 YYTGFALFWG G ITVGLCNLIC Site 243
B_fuckeliana_3 LYTGFIQLGA G LSVGLAGLAA Site 243
Species Residue at Site 291
in 'msaprobs'
muscle

The residue for every species at site 291 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

T_adhaerens_16 YFGGYSIFAA G LTVGLSNLAC Site 243
S_cerevisiae_16 LYTGYSLFWA G ITVGASNLIC Site 243
R_norvegicus_3 LYRSFLQLGA G LSVGLSGLAA Site 243
S_cerevisiae_11 LFNGFMHLSC G LCVGFACLSS Site 243
B_taurus_3 LYRSFLQLGA G LSVGLSGLAA Site 243
C_familiaris_3 LYRSFLQLGA G LSVGLSGLAA Site 243
P_anserina_3 LYTGFVQLGA G LSVGLAGMAA Site 243
P_marneffei_11 LYTSFMHLAS G LSVGLAGIAA Site 243
P_knowlesi_3 TFSGYTHLSS G LIVGLSSLAA Site 243
T_guttata_16 YHAGFSMFGA G LTVGLCNLFC Site 243
B_fuckeliana_11 LFNGFMHLAC G LSVGLTGLAA Site 243
C_cinerea_okayama_3 LAQGFIQLGA G LAVGLAGLAA Site 243
P_falciparum_16 IRGGWALFAS G LTAGLSNLVS Site 243
N_vectensis_16 YTAGYKIFGA G MTVGFCNLAC Site 243
A_niger_11 LYTGFMHLAA G LSVGLAGVAA Site 243
A_niger_16 YYTGYALFWG G ITVGACNLIC Site 243
C_parvum_3 AYTAYAQMSA G LVIGLSSLAA Site 243
S_purpuratus_16 YLAGYAIFGA G LTVGFTNLAC Site 243
B_floridae_3 TYRSFLHLGA G LSVGLSGLAA Site 243
Y_lipolytica_16 MYTGFSLFWA G LTVGLGNLVC Site 243
A_mellifera_3 LFKGFVHLGA G LAVGFSGLAA Site 243
A_clavatus_16 YYTGYALFWG G ITVGACNLIC Site 243
A_clavatus_11 LYTGFMHLAS G LSVGLAGLAA Site 243
S_sclerotiorum_3 LYTGFIQLGA G LSVGLAGLAA Site 243
P_falciparum_3 TFAGYAHLSS G LIVGLSSLAA Site 243
Species Residue at Site 291
in 'msaprobs'
muscle

The residue for every species at site 291 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

D_discoideum_16 YMAGYMMFGA G ITVGLCNVFS Site 243
C_cinerea_okayama_11 LFAGFVHLAA G LACGFTGMAA Site 243
D_hansenii_16 LYTGYSLFWA G LTVGISNLIC Site 243
D_hansenii_11 LFNGFMHLAC G LSVGFACLAS Site 243
C_cinerea_okayama_16 YYTGFALFWG G LTVGACNLLC Site 243
P_vivax_3 TFSGYTHLSS G LIVGLSSLAA Site 243
C_immitis_3 LYTGFIQLGA G LSVGLAGLAA Site 243
G_zeae_11 LFSGFMHLGC G IAVGMTGLAA Site 243
C_neoformans_3 LYTGFIQLGA G LSVGLAGLAA Site 243
H_sapiens_3 LYKSFLQLGA G LSVGLSGLAA Site 243
G_zeae_16 YYTGYALFWS G ITVGMCNLIC Site 243
Y_lipolytica_11 LFNGFMHLAC G LSVGFAALAS Site 243
M_brevicollis_3 LFNGFIHLGA G LAVGISGLAA Site 243
D_discoideum_3 LMKSFTDLGA G LTVGLCGLAA Site 243
P_stipitis_16 LYTGYSLFWA G ITVGLSNLIC Site 243
C_albicans_16 LYTGYSLFWA G LTVGISNLIC Site 243
C_albicans_11 LFNGCMHLAC G LAVGFACLAS Site 243
P_stipitis_11 LFNGIMHLAC G LSVGFACLSS Site 243
X_laevis_3 LYKSFLQLGA G LSVGLSGLAA Site 243
C_glabrata_11 LFNGFMHLSC G LCVGFACLSS Site 243
E_caballus_16 YHAGYSMFGA G LTVGLSNLFC Site 243
C_glabrata_16 LYTGYSLFWA G LTVGVSNLIC Site 243
V_polyspora_11 LFNGFMHLSC G LCVGFACLSS Site 243
V_polyspora_16 LYTGYSLFWA G LTVGVSNLIC Site 243
C_hominis_16 VKSSWILLCS G LTIGLSNLFS Site 243
Species Residue at Site 291
in 'msaprobs'
muscle

The residue for every species at site 291 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

C_globosum_11 LFNGFMHLAC G LSVGLTALAA Site 243
C_globosum_16 YYTGYALFWA G ITVGMCNLIC Site 243
O_mordax_16 YQAGYSMFGA G LTVGFSNLFC Site 243
D_rerio_16 YQAGYSMFGA G LTVGFSNLFC Site 243
B_bovis_3 AYAGYSHLSA G LIVGFSGLAS Site 243
B_floridae_16 YMAGFSLFGA G LTVGMCNLVC Site 243
M_musculus_3 LYRSFLQLGA G LSVGLSGLAA Site 243
A_fumigatus_16 YYTGYALFWG G ITVGACNLIC Site 243
C_familiaris_16 YHAGYSMFGA G LTVGLSNLFC Site 243
K_lactis_11 LFNGFMHLSC G LCVGFACLSS Site 243
K_lactis_16 LYTGYSIFWA G ITVGVSNLIC Site 243
B_taurus_16 YHAGYSMFGA G LTVGLSNLFC Site 243
S_sclerotiorum_16 YYTGYALFWS G ITVGMCNLIC Site 243
S_sclerotiorum_11 LFNGFMHLAC G LSVGLTGLAA Site 243
R_norvegicus_16 YHAGYSMFGA G LTVGLSNLFC Site 243

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