V-ATPase Ancestral Library

If you use these results in your work, please cite: Hanson-Smith and Johnson, PLoS Comp. Bio., 2016


Overview | Alignments | Sites | Trees | Ancestors | Mutations


Select an Alignment:

Select a Site:

Site 290 in Alignment 'msaprobs'


Similarity to Other Alignments

What percentage of the residues at this site are inferred to be a single site (i.e. homologous) in the alignments produced by other methods? A value of 100% indicates that the existence of site 290 is robust across multiple methods. Values less than 100% indicate that other alignment methods made different homology inferences.

Similarity of Site 290 in 'msaprobs'
to Sites in 'muscle'

What percentage of the residues at this site in msaprobs are inferred to be a single site (i.e. homologous) in the alignments produced by muscle? A value of 100% indicates that the existence of site 290 is reproduced using the muscle method. Values less than 100% indicate that muscle made different homology inferences for the residues at this site.


Species Residue at Site 290
in 'msaprobs'
muscle

The residue for every species at site 290 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

M_musculus_16 NYHAGYSMFG A GLTVGLSNLF Site 242
O_mordax_3 SLYKSFLHLG A GLSVGLSGLA Site 242
D_rerio_3 SLYKSFLHLG A GLSVGLSGLA Site 242
M_grisea_16 AYFTGYALFW S GLTVGACNLI Site 242
M_grisea_11 DLFRGIMHLA C GLSVGLTGLA Site 242
A_niger_3 PLYTGFIQLG A GLAVGLAGMA Site 242
C_glabrata_3 ALYTGFVQLG A GLSVGLSGLA Site 242
A_terreus_11 SLYTGFMHLA S GLSVGLAGVA Site 242
A_terreus_16 SYYTGFALFW G GITVGMCNLI Site 242
C_parvum_16 IVKSSWILLC S GLTIGLSNLF Site 242
T_adhaerens_3 TLFMSFVDLG A GLSVGLSGLA Site 242
T_castaneum_3 SLYKGFVHLG A GLSVGFSGLA Site 242
X_tropicalis_3 TLYKSFLQLG A GLSVGLSGLA Site 242
G_zeae_3 PLFTSFIQFG A GLSVGLAGLA Site 242
L_elongisporus_3 ALYTGFIQLG A GLSVGLSGLA Site 242
A_fumigatus_3 PLYTGFIQLG A GLAVGLAGMA Site 242
M_grisea_3 ALFTGFIQLG A GLAVGLAGLA Site 242
S_pombe_3 SLYSGFIQLG A GLSVGLAGLA Site 242
C_albicans_3 SLFNGCMHLA C GLAVGFACLA Site 242
B_bovis_16 EVHRGYVLFA I GLTSGLCNLF Site 242
C_muris_3 SSYLAYAQMS A GLIIGLSCLA Site 242
S_purpuratus_3 TLYKSFMHLG A GLSVGLSGLA Site 242
C_immitis_16 NYYTGYALFW G GLTVGMCNLI Site 242
M_mulatta_16 NYHAGYSMFG A GLTVGLSNLF Site 242
Y_lipolytica_3 SLYAGFIQLG A GLSVGLSGLA Site 242
Species Residue at Site 290
in 'msaprobs'
muscle

The residue for every species at site 290 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

B_fuckeliana_16 NYYTGYALFW S GITVGMCNLI Site 242
C_immitis_11 SLYAGFVHLA A GLSVGLAGLA Site 242
A_mellifera_16 NWFAGYLMFG A GLAVGLVNLF Site 242
A_gossypii_11 TLFNGFMHLA A GLCVGFACLS Site 242
T_annulata_16 DLFRGYSMLA V GLIVGFSNLF Site 242
N_vectensis_3 TLYKSFLDLG A GLSVGLSGLA Site 242
S_Salar_16 NYQAGYSMFG A GLTVGFSNLF Site 242
L_elongisporus_16 NLYTGYSLFW A GLTVGISNLI Site 242
C_neoformans_16 NYYTGFALFW G GLAVGVCNLL Site 242
C_neoformans_11 SLFAGFVHLA A GLACGFTGLA Site 242
P_knowlesi_16 TIRGGWALFA S GLTAGLSNLV Site 242
A_terreus_3 PLYTGFIQLG A GLAVGLAGLA Site 242
A_pisum_3 SLFKGFIHLG A GLSVGFSGLA Site 242
S_Salar_3 TLYKSFLHLG A GLSVGLSGLA Site 242
P_marneffei_3 PLYTGFIQLG A GLAVGLAGLA Site 242
P_stipitis_3 PLYSGFIQLG A GLSVGLSGLA Site 242
A_fumigatus_11 NMSLGFMHLA S GLSVGLAGVA Site 242
A_gossypii_3 ALYTGFIQLG A GLSVGLSGLA Site 242
C_hominis_3 SLYQGYCHLA A GLISGFSCAA Site 242
C_muris_16 SIQASWIILT S GLTIGLSNLF Site 242
X_laevis_16 NYHAGFSMFG A GLTVGFSNLF Site 242
M_mulatta_3 SLYRSSLQLS A GLRVGPSGLA Site 242
M_brevicollis_16 DASTGYALFA G GITTGFCNLV Site 242
K_lactis_3 ALYTGFIQLG A GLSVGLSGLA Site 242
T_castaneum_16 NWLAGYSMFG A GVAVGLVNLF Site 242
Species Residue at Site 290
in 'msaprobs'
muscle

The residue for every species at site 290 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

C_intestinalis_16 NIFAGYALFG A GLTTGLSNLA Site 242
E_caballus_3 SLYRSFLQLG A GLSVGLSGLA Site 242
C_globosum_3 ALYTGFIQLG A GLAVGLAGMA Site 242
A_clavatus_3 PLYTGFIQLG A GLAVGLAGLA Site 242
N_crassa_11 SLFNGFMHLA C GLSVGLTGLA Site 242
N_crassa_16 SYYTGFALFW A GLTVGMCNLV Site 242
X_tropicalis_16 NYHAGFSMFG A GLTVGFSNLF Site 242
P_anserina_11 SLFNGFMHLA C GLSVGLTGLA Site 242
P_vivax_16 TIRGGWALFA S GLTAGLSNLV Site 242
P_anserina_16 TYFTGYALFW A GLTVGMCNLV Site 242
H_sapiens_16 NYHAGYSMFG A GLTVGLSNLF Site 242
T_annulata_3 SHFLGYSHLA A GLVVGLCSLA Site 242
C_intestinalis_3 TLFAAFLHLG A GLSVGLSGLA Site 242
L_elongisporus_11 SLFNGFMHLA C GLSVGFACLA Site 242
A_gossypii_16 NLYTGYSLFW A GITVGVSNMI Site 242
A_pisum_16 NWMAGYLIFA A GISVGLVNLF Site 242
N_crassa_3 ALYTGFIQLG A GLAVGLAGLA Site 242
V_polyspora_3 ALYTGFIQLG A GLSVGLSGLA Site 242
S_cerevisiae_3 ALYTGFIQLG A GLSVGLSGLA Site 242
P_marneffei_16 NMYTGFSLFW G GITVGACNLI Site 242
D_hansenii_3 ALYTGFIQLG A GLSVGLSGLA Site 242
S_pombe_11 SLFSGFIHLS A GLAVGLTGVA Site 242
T_guttata_3 TLFKSFLQLG A GLSVGLSGLA Site 242
S_pombe_16 HYYTGFALFW G GITVGLCNLI Site 242
B_fuckeliana_3 ALYTGFIQLG A GLSVGLAGLA Site 242
Species Residue at Site 290
in 'msaprobs'
muscle

The residue for every species at site 290 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

T_adhaerens_16 NYFGGYSIFA A GLTVGLSNLA Site 242
S_cerevisiae_16 NLYTGYSLFW A GITVGASNLI Site 242
R_norvegicus_3 TLYRSFLQLG A GLSVGLSGLA Site 242
S_cerevisiae_11 TLFNGFMHLS C GLCVGFACLS Site 242
B_taurus_3 SLYRSFLQLG A GLSVGLSGLA Site 242
C_familiaris_3 SLYRSFLQLG A GLSVGLSGLA Site 242
P_anserina_3 ALYTGFVQLG A GLSVGLAGMA Site 242
P_marneffei_11 SLYTSFMHLA S GLSVGLAGIA Site 242
P_knowlesi_3 STFSGYTHLS S GLIVGLSSLA Site 242
T_guttata_16 NYHAGFSMFG A GLTVGLCNLF Site 242
B_fuckeliana_11 SLFNGFMHLA C GLSVGLTGLA Site 242
C_cinerea_okayama_3 SLAQGFIQLG A GLAVGLAGLA Site 242
P_falciparum_16 TIRGGWALFA S GLTAGLSNLV Site 242
N_vectensis_16 LYTAGYKIFG A GMTVGFCNLA Site 242
A_niger_11 SLYTGFMHLA A GLSVGLAGVA Site 242
A_niger_16 NYYTGYALFW G GITVGACNLI Site 242
C_parvum_3 SAYTAYAQMS A GLVIGLSSLA Site 242
S_purpuratus_16 NYLAGYAIFG A GLTVGFTNLA Site 242
B_floridae_3 TTYRSFLHLG A GLSVGLSGLA Site 242
Y_lipolytica_16 NMYTGFSLFW A GLTVGLGNLV Site 242
A_mellifera_3 TLFKGFVHLG A GLAVGFSGLA Site 242
A_clavatus_16 NYYTGYALFW G GITVGACNLI Site 242
A_clavatus_11 SLYTGFMHLA S GLSVGLAGLA Site 242
S_sclerotiorum_3 ALYTGFIQLG A GLSVGLAGLA Site 242
P_falciparum_3 STFAGYAHLS S GLIVGLSSLA Site 242
Species Residue at Site 290
in 'msaprobs'
muscle

The residue for every species at site 290 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

D_discoideum_16 DYMAGYMMFG A GITVGLCNVF Site 242
C_cinerea_okayama_11 SLFAGFVHLA A GLACGFTGMA Site 242
D_hansenii_16 NLYTGYSLFW A GLTVGISNLI Site 242
D_hansenii_11 SLFNGFMHLA C GLSVGFACLA Site 242
C_cinerea_okayama_16 NYYTGFALFW G GLTVGACNLL Site 242
P_vivax_3 STFSGYTHLS S GLIVGLSSLA Site 242
C_immitis_3 SLYTGFIQLG A GLSVGLAGLA Site 242
G_zeae_11 SLFSGFMHLG C GIAVGMTGLA Site 242
C_neoformans_3 PLYTGFIQLG A GLSVGLAGLA Site 242
H_sapiens_3 SLYKSFLQLG A GLSVGLSGLA Site 242
G_zeae_16 SYYTGYALFW S GITVGMCNLI Site 242
Y_lipolytica_11 SLFNGFMHLA C GLSVGFAALA Site 242
M_brevicollis_3 PLFNGFIHLG A GLAVGISGLA Site 242
D_discoideum_3 TLMKSFTDLG A GLTVGLCGLA Site 242
P_stipitis_16 NLYTGYSLFW A GITVGLSNLI Site 242
C_albicans_16 NLYTGYSLFW A GLTVGISNLI Site 242
C_albicans_11 SLFNGCMHLA C GLAVGFACLA Site 242
P_stipitis_11 SLFNGIMHLA C GLSVGFACLS Site 242
X_laevis_3 TLYKSFLQLG A GLSVGLSGLA Site 242
C_glabrata_11 TLFNGFMHLS C GLCVGFACLS Site 242
E_caballus_16 NYHAGYSMFG A GLTVGLSNLF Site 242
C_glabrata_16 NLYTGYSLFW A GLTVGVSNLI Site 242
V_polyspora_11 TLFNGFMHLS C GLCVGFACLS Site 242
V_polyspora_16 NLYTGYSLFW A GLTVGVSNLI Site 242
C_hominis_16 IVKSSWILLC S GLTIGLSNLF Site 242
Species Residue at Site 290
in 'msaprobs'
muscle

The residue for every species at site 290 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

C_globosum_11 SLFNGFMHLA C GLSVGLTALA Site 242
C_globosum_16 TYYTGYALFW A GITVGMCNLI Site 242
O_mordax_16 NYQAGYSMFG A GLTVGFSNLF Site 242
D_rerio_16 NYQAGYSMFG A GLTVGFSNLF Site 242
B_bovis_3 SAYAGYSHLS A GLIVGFSGLA Site 242
B_floridae_16 NYMAGFSLFG A GLTVGMCNLV Site 242
M_musculus_3 TLYRSFLQLG A GLSVGLSGLA Site 242
A_fumigatus_16 NYYTGYALFW G GITVGACNLI Site 242
C_familiaris_16 NYHAGYSMFG A GLTVGLSNLF Site 242
K_lactis_11 TLFNGFMHLS C GLCVGFACLS Site 242
K_lactis_16 NLYTGYSIFW A GITVGVSNLI Site 242
B_taurus_16 NYHAGYSMFG A GLTVGLSNLF Site 242
S_sclerotiorum_16 NYYTGYALFW S GITVGMCNLI Site 242
S_sclerotiorum_11 SLFNGFMHLA C GLSVGLTGLA Site 242
R_norvegicus_16 NYHAGYSMFG A GLTVGLSNLF Site 242

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