V-ATPase Ancestral Library

If you use these results in your work, please cite: Hanson-Smith and Johnson, PLoS Comp. Bio., 2016


Overview | Alignments | Sites | Trees | Ancestors | Mutations


Select an Alignment:

Select a Site:

Site 288 in Alignment 'msaprobs'


Similarity to Other Alignments

What percentage of the residues at this site are inferred to be a single site (i.e. homologous) in the alignments produced by other methods? A value of 100% indicates that the existence of site 288 is robust across multiple methods. Values less than 100% indicate that other alignment methods made different homology inferences.

Similarity of Site 288 in 'msaprobs'
to Sites in 'muscle'

What percentage of the residues at this site in msaprobs are inferred to be a single site (i.e. homologous) in the alignments produced by muscle? A value of 100% indicates that the existence of site 288 is reproduced using the muscle method. Values less than 100% indicate that muscle made different homology inferences for the residues at this site.


Species Residue at Site 288
in 'msaprobs'
muscle

The residue for every species at site 288 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

M_musculus_16 HRNYHAGYSM F GAGLTVGLSN Site 240
O_mordax_3 KVSLYKSFLH L GAGLSVGLSG Site 240
D_rerio_3 KISLYKSFLH L GAGLSVGLSG Site 240
M_grisea_16 ANAYFTGYAL F WSGLTVGACN Site 240
M_grisea_11 SYDLFRGIMH L ACGLSVGLTG Site 240
A_niger_3 KVPLYTGFIQ L GAGLAVGLAG Site 240
C_glabrata_3 KQALYTGFVQ L GAGLSVGLSG Site 240
A_terreus_11 NTSLYTGFMH L ASGLSVGLAG Site 240
A_terreus_16 GSSYYTGFAL F WGGITVGMCN Site 240
C_parvum_16 VQIVKSSWIL L CSGLTIGLSN Site 240
T_adhaerens_3 EYTLFMSFVD L GAGLSVGLSG Site 240
T_castaneum_3 NYSLYKGFVH L GAGLSVGFSG Site 240
X_tropicalis_3 SITLYKSFLQ L GAGLSVGLSG Site 240
G_zeae_3 DLPLFTSFIQ F GAGLSVGLAG Site 240
L_elongisporus_3 KQALYTGFIQ L GAGLSVGLSG Site 240
A_fumigatus_3 SVPLYTGFIQ L GAGLAVGLAG Site 240
M_grisea_3 EYALFTGFIQ L GAGLAVGLAG Site 240
S_pombe_3 ILSLYSGFIQ L GAGLSVGLAG Site 240
C_albicans_3 NYSLFNGCMH L ACGLAVGFAC Site 240
B_bovis_16 FLEVHRGYVL F AIGLTSGLCN Site 240
C_muris_3 FYSSYLAYAQ M SAGLIIGLSC Site 240
S_purpuratus_3 AYTLYKSFMH L GAGLSVGLSG Site 240
C_immitis_16 GDNYYTGYAL F WGGLTVGMCN Site 240
M_mulatta_16 HRNYHAGYSM F GAGLTVGLSN Site 240
Y_lipolytica_3 QSSLYAGFIQ L GAGLSVGLSG Site 240
Species Residue at Site 288
in 'msaprobs'
muscle

The residue for every species at site 288 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

B_fuckeliana_16 ASNYYTGYAL F WSGITVGMCN Site 240
C_immitis_11 NYSLYAGFVH L AAGLSVGLAG Site 240
A_mellifera_16 DQNWFAGYLM F GAGLAVGLVN Site 240
A_gossypii_11 EYTLFNGFMH L AAGLCVGFAC Site 240
T_annulata_16 YNDLFRGYSM L AVGLIVGFSN Site 240
N_vectensis_3 DYTLYKSFLD L GAGLSVGLSG Site 240
S_Salar_16 ARNYQAGYSM F GAGLTVGFSN Site 240
L_elongisporus_16 KENLYTGYSL F WAGLTVGISN Site 240
C_neoformans_16 ANNYYTGFAL F WGGLAVGVCN Site 240
C_neoformans_11 PYSLFAGFVH L AAGLACGFTG Site 240
P_knowlesi_16 MNTIRGGWAL F ASGLTAGLSN Site 240
A_terreus_3 RLPLYTGFIQ L GAGLAVGLAG Site 240
A_pisum_3 KYSLFKGFIH L GAGLSVGFSG Site 240
S_Salar_3 KVTLYKSFLH L GAGLSVGLSG Site 240
P_marneffei_3 RLPLYTGFIQ L GAGLAVGLAG Site 240
P_stipitis_3 ELPLYSGFIQ L GAGLSVGLSG Site 240
A_fumigatus_11 TQNMSLGFMH L ASGLSVGLAG Site 240
A_gossypii_3 KQALYTGFIQ L GAGLSVGLSG Site 240
C_hominis_3 DYSLYQGYCH L AAGLISGFSC Site 240
C_muris_16 AESIQASWII L TSGLTIGLSN Site 240
X_laevis_16 NRNYHAGFSM F GAGLTVGFSN Site 240
M_mulatta_3 DISLYRSSLQ L SAGLRVGPSG Site 240
M_brevicollis_16 IKDASTGYAL F AGGITTGFCN Site 240
K_lactis_3 KQALYTGFIQ L GAGLSVGLSG Site 240
T_castaneum_16 ARNWLAGYSM F GAGVAVGLVN Site 240
Species Residue at Site 288
in 'msaprobs'
muscle

The residue for every species at site 288 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

C_intestinalis_16 AQNIFAGYAL F GAGLTTGLSN Site 240
E_caballus_3 DISLYRSFLQ L GAGLSVGLSG Site 240
C_globosum_3 NYALYTGFIQ L GAGLAVGLAG Site 240
A_clavatus_3 SLPLYTGFIQ L GAGLAVGLAG Site 240
N_crassa_11 HYSLFNGFMH L ACGLSVGLTG Site 240
N_crassa_16 GDSYYTGFAL F WAGLTVGMCN Site 240
X_tropicalis_16 SRNYHAGFSM F GAGLTVGFSN Site 240
P_anserina_11 NYSLFNGFMH L ACGLSVGLTG Site 240
P_vivax_16 MNTIRGGWAL F ASGLTAGLSN Site 240
P_anserina_16 GSTYFTGYAL F WAGLTVGMCN Site 240
H_sapiens_16 HRNYHAGYSM F GAGLTVGLSN Site 240
T_annulata_3 EYSHFLGYSH L AAGLVVGLCS Site 240
C_intestinalis_3 TMTLFAAFLH L GAGLSVGLSG Site 240
L_elongisporus_11 NYSLFNGFMH L ACGLSVGFAC Site 240
A_gossypii_16 KSNLYTGYSL F WAGITVGVSN Site 240
A_pisum_16 DQNWMAGYLI F AAGISVGLVN Site 240
N_crassa_3 HYALYTGFIQ L GAGLAVGLAG Site 240
V_polyspora_3 KQALYTGFIQ L GAGLSVGLSG Site 240
S_cerevisiae_3 KQALYTGFIQ L GAGLSVGLSG Site 240
P_marneffei_16 GSNMYTGFSL F WGGITVGACN Site 240
D_hansenii_3 KQALYTGFIQ L GAGLSVGLSG Site 240
S_pombe_11 DYSLFSGFIH L SAGLAVGLTG Site 240
T_guttata_3 EITLFKSFLQ L GAGLSVGLSG Site 240
S_pombe_16 KSHYYTGFAL F WGGITVGLCN Site 240
B_fuckeliana_3 HLALYTGFIQ L GAGLSVGLAG Site 240
Species Residue at Site 288
in 'msaprobs'
muscle

The residue for every species at site 288 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

T_adhaerens_16 RQNYFGGYSI F AAGLTVGLSN Site 240
S_cerevisiae_16 KSNLYTGYSL F WAGITVGASN Site 240
R_norvegicus_3 GITLYRSFLQ L GAGLSVGLSG Site 240
S_cerevisiae_11 DYTLFNGFMH L SCGLCVGFAC Site 240
B_taurus_3 GISLYRSFLQ L GAGLSVGLSG Site 240
C_familiaris_3 GISLYRSFLQ L GAGLSVGLSG Site 240
P_anserina_3 SYALYTGFVQ L GAGLSVGLAG Site 240
P_marneffei_11 NTSLYTSFMH L ASGLSVGLAG Site 240
P_knowlesi_3 EYSTFSGYTH L SSGLIVGLSS Site 240
T_guttata_16 ARNYHAGFSM F GAGLTVGLCN Site 240
B_fuckeliana_11 SYSLFNGFMH L ACGLSVGLTG Site 240
C_cinerea_okayama_3 TMSLAQGFIQ L GAGLAVGLAG Site 240
P_falciparum_16 MNTIRGGWAL F ASGLTAGLSN Site 240
N_vectensis_16 MQLYTAGYKI F GAGMTVGFCN Site 240
A_niger_11 HMSLYTGFMH L AAGLSVGLAG Site 240
A_niger_16 GSNYYTGYAL F WGGITVGACN Site 240
C_parvum_3 LYSAYTAYAQ M SAGLVIGLSS Site 240
S_purpuratus_16 AANYLAGYAI F GAGLTVGFTN Site 240
B_floridae_3 AYTTYRSFLH L GAGLSVGLSG Site 240
Y_lipolytica_16 KSNMYTGFSL F WAGLTVGLGN Site 240
A_mellifera_3 GYTLFKGFVH L GAGLAVGFSG Site 240
A_clavatus_16 GSNYYTGYAL F WGGITVGACN Site 240
A_clavatus_11 NMSLYTGFMH L ASGLSVGLAG Site 240
S_sclerotiorum_3 ELALYTGFIQ L GAGLSVGLAG Site 240
P_falciparum_3 GYSTFAGYAH L SSGLIVGLSS Site 240
Species Residue at Site 288
in 'msaprobs'
muscle

The residue for every species at site 288 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

D_discoideum_16 ASDYMAGYMM F GAGITVGLCN Site 240
C_cinerea_okayama_11 NYSLFAGFVH L AAGLACGFTG Site 240
D_hansenii_16 KENLYTGYSL F WAGLTVGISN Site 240
D_hansenii_11 NYSLFNGFMH L ACGLSVGFAC Site 240
C_cinerea_okayama_16 RENYYTGFAL F WGGLTVGACN Site 240
P_vivax_3 EYSTFSGYTH L SSGLIVGLSS Site 240
C_immitis_3 NKSLYTGFIQ L GAGLSVGLAG Site 240
G_zeae_11 NYSLFSGFMH L GCGIAVGMTG Site 240
C_neoformans_3 PMPLYTGFIQ L GAGLSVGLAG Site 240
H_sapiens_3 DISLYKSFLQ L GAGLSVGLSG Site 240
G_zeae_16 AESYYTGYAL F WSGITVGMCN Site 240
Y_lipolytica_11 NYSLFNGFMH L ACGLSVGFAA Site 240
M_brevicollis_3 DYPLFNGFIH L GAGLAVGISG Site 240
D_discoideum_3 NYTLMKSFTD L GAGLTVGLCG Site 240
P_stipitis_16 KENLYTGYSL F WAGITVGLSN Site 240
C_albicans_16 KENLYTGYSL F WAGLTVGISN Site 240
C_albicans_11 NYSLFNGCMH L ACGLAVGFAC Site 240
P_stipitis_11 TYSLFNGIMH L ACGLSVGFAC Site 240
X_laevis_3 TITLYKSFLQ L GAGLSVGLSG Site 240
C_glabrata_11 EYTLFNGFMH L SCGLCVGFAC Site 240
E_caballus_16 HRNYHAGYSM F GAGLTVGLSN Site 240
C_glabrata_16 KSNLYTGYSL F WAGLTVGVSN Site 240
V_polyspora_11 DYTLFNGFMH L SCGLCVGFAC Site 240
V_polyspora_16 KSNLYTGYSL F WAGLTVGVSN Site 240
C_hominis_16 VQIVKSSWIL L CSGLTIGLSN Site 240
Species Residue at Site 288
in 'msaprobs'
muscle

The residue for every species at site 288 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

C_globosum_11 NYSLFNGFMH L ACGLSVGLTA Site 240
C_globosum_16 ADTYYTGYAL F WAGITVGMCN Site 240
O_mordax_16 ARNYQAGYSM F GAGLTVGFSN Site 240
D_rerio_16 SKNYQAGYSM F GAGLTVGFSN Site 240
B_bovis_3 SYSAYAGYSH L SAGLIVGFSG Site 240
B_floridae_16 KANYMAGFSL F GAGLTVGMCN Site 240
M_musculus_3 GITLYRSFLQ L GAGLSVGLSG Site 240
A_fumigatus_16 GSNYYTGYAL F WGGITVGACN Site 240
C_familiaris_16 HRNYHAGYSM F GAGLTVGLSN Site 240
K_lactis_11 DYTLFNGFMH L SCGLCVGFAC Site 240
K_lactis_16 KSNLYTGYSI F WAGITVGVSN Site 240
B_taurus_16 HRNYHAGYSM F GAGLTVGLSN Site 240
S_sclerotiorum_16 ASNYYTGYAL F WSGITVGMCN Site 240
S_sclerotiorum_11 SYSLFNGFMH L ACGLSVGLTG Site 240
R_norvegicus_16 HRNYHAGYSM F GAGLTVGLSN Site 240

Generated by PhyloBot at 16:18, October 30th 2020
Questions/Comments? help@phylobot.com