V-ATPase Ancestral Library

If you use these results in your work, please cite: Hanson-Smith and Johnson, PLoS Comp. Bio., 2016


Overview | Alignments | Sites | Trees | Ancestors | Mutations


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Select a Site:

Site 286 in Alignment 'msaprobs'


Similarity to Other Alignments

What percentage of the residues at this site are inferred to be a single site (i.e. homologous) in the alignments produced by other methods? A value of 100% indicates that the existence of site 286 is robust across multiple methods. Values less than 100% indicate that other alignment methods made different homology inferences.

Similarity of Site 286 in 'msaprobs'
to Sites in 'muscle'

What percentage of the residues at this site in msaprobs are inferred to be a single site (i.e. homologous) in the alignments produced by muscle? A value of 100% indicates that the existence of site 286 is reproduced using the muscle method. Values less than 100% indicate that muscle made different homology inferences for the residues at this site.


Species Residue at Site 286
in 'msaprobs'
muscle

The residue for every species at site 286 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

M_musculus_16 IGHRNYHAGY S MFGAGLTVGL Site 238
O_mordax_3 --KVSLYKSF L HLGAGLSVGL Site 238
D_rerio_3 --KISLYKSF L HLGAGLSVGL Site 238
M_grisea_16 YSANAYFTGY A LFWSGLTVGA Site 238
M_grisea_11 GTSYDLFRGI M HLACGLSVGL Site 238
A_niger_3 --KVPLYTGF I QLGAGLAVGL Site 238
C_glabrata_3 --KQALYTGF V QLGAGLSVGL Site 238
A_terreus_11 LQNTSLYTGF M HLASGLSVGL Site 238
A_terreus_16 YSGSSYYTGF A LFWGGITVGM Site 238
C_parvum_16 WEVQIVKSSW I LLCSGLTIGL Site 238
T_adhaerens_3 --EYTLFMSF V DLGAGLSVGL Site 238
T_castaneum_3 -NNYSLYKGF V HLGAGLSVGF Site 238
X_tropicalis_3 --SITLYKSF L QLGAGLSVGL Site 238
G_zeae_3 --DLPLFTSF I QFGAGLSVGL Site 238
L_elongisporus_3 --KQALYTGF I QLGAGLSVGL Site 238
A_fumigatus_3 --SVPLYTGF I QLGAGLAVGL Site 238
M_grisea_3 -DEYALFTGF I QLGAGLAVGL Site 238
S_pombe_3 --ILSLYSGF I QLGAGLSVGL Site 238
C_albicans_3 -ENYSLFNGC M HLACGLAVGF Site 238
B_bovis_16 LYFLEVHRGY V LFAIGLTSGL Site 238
C_muris_3 -NFYSSYLAY A QMSAGLIIGL Site 238
S_purpuratus_3 -SAYTLYKSF M HLGAGLSVGL Site 238
C_immitis_16 YSGDNYYTGY A LFWGGLTVGM Site 238
M_mulatta_16 IGHRNYHAGY S MFGAGLTVGL Site 238
Y_lipolytica_3 --QSSLYAGF I QLGAGLSVGL Site 238
Species Residue at Site 286
in 'msaprobs'
muscle

The residue for every species at site 286 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

B_fuckeliana_16 YSASNYYTGY A LFWSGITVGM Site 238
C_immitis_11 -QNYSLYAGF V HLAAGLSVGL Site 238
A_mellifera_16 VRDQNWFAGY L MFGAGLAVGL Site 238
A_gossypii_11 -EEYTLFNGF M HLAAGLCVGF Site 238
T_annulata_16 LYYNDLFRGY S MLAVGLIVGF Site 238
N_vectensis_3 --DYTLYKSF L DLGAGLSVGL Site 238
S_Salar_16 IGARNYQAGY S MFGAGLTVGF Site 238
L_elongisporus_16 YTKENLYTGY S LFWAGLTVGI Site 238
C_neoformans_16 YTANNYYTGF A LFWGGLAVGV Site 238
C_neoformans_11 -EPYSLFAGF V HLAAGLACGF Site 238
P_knowlesi_16 LIMNTIRGGW A LFASGLTAGL Site 238
A_terreus_3 --RLPLYTGF I QLGAGLAVGL Site 238
A_pisum_3 -SKYSLFKGF I HLGAGLSVGF Site 238
S_Salar_3 --KVTLYKSF L HLGAGLSVGL Site 238
P_marneffei_3 --RLPLYTGF I QLGAGLAVGL Site 238
P_stipitis_3 --ELPLYSGF I QLGAGLSVGL Site 238
A_fumigatus_11 --TQNMSLGF M HLASGLSVGL Site 238
A_gossypii_3 --KQALYTGF I QLGAGLSVGL Site 238
C_hominis_3 --DYSLYQGY C HLAAGLISGF Site 238
C_muris_16 WVAESIQASW I ILTSGLTIGL Site 238
X_laevis_16 IGNRNYHAGF S MFGAGLTVGF Site 238
M_mulatta_3 --DISLYRSS L QLSAGLRVGP Site 238
M_brevicollis_16 ISIKDASTGY A LFAGGITTGF Site 238
K_lactis_3 --KQALYTGF I QLGAGLSVGL Site 238
T_castaneum_16 IKARNWLAGY S MFGAGVAVGL Site 238
Species Residue at Site 286
in 'msaprobs'
muscle

The residue for every species at site 286 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

C_intestinalis_16 MMAQNIFAGY A LFGAGLTTGL Site 238
E_caballus_3 --DISLYRSF L QLGAGLSVGL Site 238
C_globosum_3 -DNYALYTGF I QLGAGLAVGL Site 238
A_clavatus_3 --SLPLYTGF I QLGAGLAVGL Site 238
N_crassa_11 GQHYSLFNGF M HLACGLSVGL Site 238
N_crassa_16 YSGDSYYTGF A LFWAGLTVGM Site 238
X_tropicalis_16 IGSRNYHAGF S MFGAGLTVGF Site 238
P_anserina_11 GANYSLFNGF M HLACGLSVGL Site 238
P_vivax_16 LIMNTIRGGW A LFASGLTAGL Site 238
P_anserina_16 YSGSTYFTGY A LFWAGLTVGM Site 238
H_sapiens_16 IGHRNYHAGY S MFGAGLTVGL Site 238
T_annulata_3 -GEYSHFLGY S HLAAGLVVGL Site 238
C_intestinalis_3 --TMTLFAAF L HLGAGLSVGL Site 238
L_elongisporus_11 -ENYSLFNGF M HLACGLSVGF Site 238
A_gossypii_16 FSKSNLYTGY S LFWAGITVGV Site 238
A_pisum_16 IRDQNWMAGY L IFAAGISVGL Site 238
N_crassa_3 -DHYALYTGF I QLGAGLAVGL Site 238
V_polyspora_3 --KQALYTGF I QLGAGLSVGL Site 238
S_cerevisiae_3 --KQALYTGF I QLGAGLSVGL Site 238
P_marneffei_16 YSGSNMYTGF S LFWGGITVGA Site 238
D_hansenii_3 --KQALYTGF I QLGAGLSVGL Site 238
S_pombe_11 -NDYSLFSGF I HLSAGLAVGL Site 238
T_guttata_3 --EITLFKSF L QLGAGLSVGL Site 238
S_pombe_16 YTKSHYYTGF A LFWGGITVGL Site 238
B_fuckeliana_3 --HLALYTGF I QLGAGLSVGL Site 238
Species Residue at Site 286
in 'msaprobs'
muscle

The residue for every species at site 286 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

T_adhaerens_16 ILRQNYFGGY S IFAAGLTVGL Site 238
S_cerevisiae_16 YSKSNLYTGY S LFWAGITVGA Site 238
R_norvegicus_3 --GITLYRSF L QLGAGLSVGL Site 238
S_cerevisiae_11 -EDYTLFNGF M HLSCGLCVGF Site 238
B_taurus_3 --GISLYRSF L QLGAGLSVGL Site 238
C_familiaris_3 --GISLYRSF L QLGAGLSVGL Site 238
P_anserina_3 -DSYALYTGF V QLGAGLSVGL Site 238
P_marneffei_11 GQNTSLYTSF M HLASGLSVGL Site 238
P_knowlesi_3 -AEYSTFSGY T HLSSGLIVGL Site 238
T_guttata_16 IGARNYHAGF S MFGAGLTVGL Site 238
B_fuckeliana_11 GQSYSLFNGF M HLACGLSVGL Site 238
C_cinerea_okayama_3 --TMSLAQGF I QLGAGLAVGL Site 238
P_falciparum_16 LIMNTIRGGW A LFASGLTAGL Site 238
N_vectensis_16 NLMQLYTAGY K IFGAGMTVGF Site 238
A_niger_11 NKHMSLYTGF M HLAAGLSVGL Site 238
A_niger_16 FSGSNYYTGY A LFWGGITVGA Site 238
C_parvum_3 -NLYSAYTAY A QMSAGLVIGL Site 238
S_purpuratus_16 TVAANYLAGY A IFGAGLTVGF Site 238
B_floridae_3 -DAYTTYRSF L HLGAGLSVGL Site 238
Y_lipolytica_16 YTKSNMYTGF S LFWAGLTVGL Site 238
A_mellifera_3 -KGYTLFKGF V HLGAGLAVGF Site 238
A_clavatus_16 FSGSNYYTGY A LFWGGITVGA Site 238
A_clavatus_11 TQNMSLYTGF M HLASGLSVGL Site 238
S_sclerotiorum_3 --ELALYTGF I QLGAGLSVGL Site 238
P_falciparum_3 -EGYSTFAGY A HLSSGLIVGL Site 238
Species Residue at Site 286
in 'msaprobs'
muscle

The residue for every species at site 286 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

D_discoideum_16 DPASDYMAGY M MFGAGITVGL Site 238
C_cinerea_okayama_11 --NYSLFAGF V HLAAGLACGF Site 238
D_hansenii_16 FTKENLYTGY S LFWAGLTVGI Site 238
D_hansenii_11 -ENYSLFNGF M HLACGLSVGF Site 238
C_cinerea_okayama_16 YTRENYYTGF A LFWGGLTVGA Site 238
P_vivax_3 -AEYSTFSGY T HLSSGLIVGL Site 238
C_immitis_3 --NKSLYTGF I QLGAGLSVGL Site 238
G_zeae_11 -KNYSLFSGF M HLGCGIAVGM Site 238
C_neoformans_3 --PMPLYTGF I QLGAGLSVGL Site 238
H_sapiens_3 --DISLYKSF L QLGAGLSVGL Site 238
G_zeae_16 YAAESYYTGY A LFWSGITVGM Site 238
Y_lipolytica_11 -ENYSLFNGF M HLACGLSVGF Site 238
M_brevicollis_3 --DYPLFNGF I HLGAGLAVGI Site 238
D_discoideum_3 -ANYTLMKSF T DLGAGLTVGL Site 238
P_stipitis_16 FTKENLYTGY S LFWAGITVGL Site 238
C_albicans_16 YTKENLYTGY S LFWAGLTVGI Site 238
C_albicans_11 -ENYSLFNGC M HLACGLAVGF Site 238
P_stipitis_11 -ETYSLFNGI M HLACGLSVGF Site 238
X_laevis_3 --TITLYKSF L QLGAGLSVGL Site 238
C_glabrata_11 -EEYTLFNGF M HLSCGLCVGF Site 238
E_caballus_16 IGHRNYHAGY S MFGAGLTVGL Site 238
C_glabrata_16 YSKSNLYTGY S LFWAGLTVGV Site 238
V_polyspora_11 -QDYTLFNGF M HLSCGLCVGF Site 238
V_polyspora_16 ASKSNLYTGY S LFWAGLTVGV Site 238
C_hominis_16 WEVQIVKSSW I LLCSGLTIGL Site 238
Species Residue at Site 286
in 'msaprobs'
muscle

The residue for every species at site 286 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

C_globosum_11 GSNYSLFNGF M HLACGLSVGL Site 238
C_globosum_16 WSADTYYTGY A LFWAGITVGM Site 238
O_mordax_16 IGARNYQAGY S MFGAGLTVGF Site 238
D_rerio_16 IGSKNYQAGY S MFGAGLTVGF Site 238
B_bovis_3 -GSYSAYAGY S HLSAGLIVGF Site 238
B_floridae_16 VRKANYMAGF S LFGAGLTVGM Site 238
M_musculus_3 --GITLYRSF L QLGAGLSVGL Site 238
A_fumigatus_16 FSGSNYYTGY A LFWGGITVGA Site 238
C_familiaris_16 IGHRNYHAGY S MFGAGLTVGL Site 238
K_lactis_11 -EDYTLFNGF M HLSCGLCVGF Site 238
K_lactis_16 FDKSNLYTGY S IFWAGITVGV Site 238
B_taurus_16 IGHRNYHAGY S MFGAGLTVGL Site 238
S_sclerotiorum_16 YSASNYYTGY A LFWSGITVGM Site 238
S_sclerotiorum_11 GQSYSLFNGF M HLACGLSVGL Site 238
R_norvegicus_16 IGHRNYHAGY S MFGAGLTVGL Site 238

Generated by PhyloBot at 17:27, October 30th 2020
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