V-ATPase Ancestral Library

If you use these results in your work, please cite: Hanson-Smith and Johnson, PLoS Comp. Bio., 2016


Overview | Alignments | Sites | Trees | Ancestors | Mutations


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Site 284 in Alignment 'msaprobs'


Similarity to Other Alignments

What percentage of the residues at this site are inferred to be a single site (i.e. homologous) in the alignments produced by other methods? A value of 100% indicates that the existence of site 284 is robust across multiple methods. Values less than 100% indicate that other alignment methods made different homology inferences.

Similarity of Site 284 in 'msaprobs'
to Sites in 'muscle'

What percentage of the residues at this site in msaprobs are inferred to be a single site (i.e. homologous) in the alignments produced by muscle? A value of 100% indicates that the existence of site 284 is reproduced using the muscle method. Values less than 100% indicate that muscle made different homology inferences for the residues at this site.


Species Residue at Site 284
in 'msaprobs'
muscle

The residue for every species at site 284 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

M_musculus_16 KAIGHRNYHA G YSMFGAGLTV Site 236
O_mordax_3 ----KVSLYK S FLHLGAGLSV Site 236
D_rerio_3 ----KISLYK S FLHLGAGLSV Site 236
M_grisea_16 GYYSANAYFT G YALFWSGLTV Site 236
M_grisea_11 --GTSYDLFR G IMHLACGLSV Site 236
A_niger_3 ----KVPLYT G FIQLGAGLAV Site 236
C_glabrata_3 ----KQALYT G FVQLGAGLSV Site 236
A_terreus_11 --LQNTSLYT G FMHLASGLSV Site 236
A_terreus_16 EIYSGSSYYT G FALFWGGITV Site 236
C_parvum_16 DAWEVQIVKS S WILLCSGLTI Site 236
T_adhaerens_3 ----EYTLFM S FVDLGAGLSV Site 236
T_castaneum_3 ---NNYSLYK G FVHLGAGLSV Site 236
X_tropicalis_3 ----SITLYK S FLQLGAGLSV Site 236
G_zeae_3 ----DLPLFT S FIQFGAGLSV Site 236
L_elongisporus_3 ----KQALYT G FIQLGAGLSV Site 236
A_fumigatus_3 ----SVPLYT G FIQLGAGLAV Site 236
M_grisea_3 ---DEYALFT G FIQLGAGLAV Site 236
S_pombe_3 ----ILSLYS G FIQLGAGLSV Site 236
C_albicans_3 ---ENYSLFN G CMHLACGLAV Site 236
B_bovis_16 TLLYFLEVHR G YVLFAIGLTS Site 236
C_muris_3 ---NFYSSYL A YAQMSAGLII Site 236
S_purpuratus_3 ---SAYTLYK S FMHLGAGLSV Site 236
C_immitis_16 TLYSGDNYYT G YALFWGGLTV Site 236
M_mulatta_16 KAIGHRNYHA G YSMFGAGLTV Site 236
Y_lipolytica_3 ----QSSLYA G FIQLGAGLSV Site 236
Species Residue at Site 284
in 'msaprobs'
muscle

The residue for every species at site 284 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

B_fuckeliana_16 NTYSASNYYT G YALFWSGITV Site 236
C_immitis_11 ---QNYSLYA G FVHLAAGLSV Site 236
A_mellifera_16 EEVRDQNWFA G YLMFGAGLAV Site 236
A_gossypii_11 ---EEYTLFN G FMHLAAGLCV Site 236
T_annulata_16 TKLYYNDLFR G YSMLAVGLIV Site 236
N_vectensis_3 ----DYTLYK S FLDLGAGLSV Site 236
S_Salar_16 ETIGARNYQA G YSMFGAGLTV Site 236
L_elongisporus_16 LLYTKENLYT G YSLFWAGLTV Site 236
C_neoformans_16 NIYTANNYYT G FALFWGGLAV Site 236
C_neoformans_11 ---EPYSLFA G FVHLAAGLAC Site 236
P_knowlesi_16 DALIMNTIRG G WALFASGLTA Site 236
A_terreus_3 ----RLPLYT G FIQLGAGLAV Site 236
A_pisum_3 ---SKYSLFK G FIHLGAGLSV Site 236
S_Salar_3 ----KVTLYK S FLHLGAGLSV Site 236
P_marneffei_3 ----RLPLYT G FIQLGAGLAV Site 236
P_stipitis_3 ----ELPLYS G FIQLGAGLSV Site 236
A_fumigatus_11 ----TQNMSL G FMHLASGLSV Site 236
A_gossypii_3 ----KQALYT G FIQLGAGLSV Site 236
C_hominis_3 ----DYSLYQ G YCHLAAGLIS Site 236
C_muris_16 TGWVAESIQA S WIILTSGLTI Site 236
X_laevis_16 EAIGNRNYHA G FSMFGAGLTV Site 236
M_mulatta_3 ----DISLYR S SLQLSAGLRV Site 236
M_brevicollis_16 GDISIKDAST G YALFAGGITT Site 236
K_lactis_3 ----KQALYT G FIQLGAGLSV Site 236
T_castaneum_16 DEIKARNWLA G YSMFGAGVAV Site 236
Species Residue at Site 284
in 'msaprobs'
muscle

The residue for every species at site 284 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

C_intestinalis_16 DSMMAQNIFA G YALFGAGLTT Site 236
E_caballus_3 ----DISLYR S FLQLGAGLSV Site 236
C_globosum_3 ---DNYALYT G FIQLGAGLAV Site 236
A_clavatus_3 ----SLPLYT G FIQLGAGLAV Site 236
N_crassa_11 --GQHYSLFN G FMHLACGLSV Site 236
N_crassa_16 QYYSGDSYYT G FALFWAGLTV Site 236
X_tropicalis_16 EAIGSRNYHA G FSMFGAGLTV Site 236
P_anserina_11 -GGANYSLFN G FMHLACGLSV Site 236
P_vivax_16 DALIMNTIRG G WALFASGLTA Site 236
P_anserina_16 DVYSGSTYFT G YALFWAGLTV Site 236
H_sapiens_16 KAIGHRNYHA G YSMFGAGLTV Site 236
T_annulata_3 ---GEYSHFL G YSHLAAGLVV Site 236
C_intestinalis_3 ----TMTLFA A FLHLGAGLSV Site 236
L_elongisporus_11 ---ENYSLFN G FMHLACGLSV Site 236
A_gossypii_16 TLFSKSNLYT G YSLFWAGITV Site 236
A_pisum_16 QQIRDQNWMA G YLIFAAGISV Site 236
N_crassa_3 ---DHYALYT G FIQLGAGLAV Site 236
V_polyspora_3 ----KQALYT G FIQLGAGLSV Site 236
S_cerevisiae_3 ----KQALYT G FIQLGAGLSV Site 236
P_marneffei_16 NVYSGSNMYT G FSLFWGGITV Site 236
D_hansenii_3 ----KQALYT G FIQLGAGLSV Site 236
S_pombe_11 ---NDYSLFS G FIHLSAGLAV Site 236
T_guttata_3 ----EITLFK S FLQLGAGLSV Site 236
S_pombe_16 GFYTKSHYYT G FALFWGGITV Site 236
B_fuckeliana_3 ----HLALYT G FIQLGAGLSV Site 236
Species Residue at Site 284
in 'msaprobs'
muscle

The residue for every species at site 284 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

T_adhaerens_16 SAILRQNYFG G YSIFAAGLTV Site 236
S_cerevisiae_16 NMYSKSNLYT G YSLFWAGITV Site 236
R_norvegicus_3 ----GITLYR S FLQLGAGLSV Site 236
S_cerevisiae_11 ---EDYTLFN G FMHLSCGLCV Site 236
B_taurus_3 ----GISLYR S FLQLGAGLSV Site 236
C_familiaris_3 ----GISLYR S FLQLGAGLSV Site 236
P_anserina_3 ---DSYALYT G FVQLGAGLSV Site 236
P_marneffei_11 --GQNTSLYT S FMHLASGLSV Site 236
P_knowlesi_3 ---AEYSTFS G YTHLSSGLIV Site 236
T_guttata_16 EEIGARNYHA G FSMFGAGLTV Site 236
B_fuckeliana_11 --GQSYSLFN G FMHLACGLSV Site 236
C_cinerea_okayama_3 ----TMSLAQ G FIQLGAGLAV Site 236
P_falciparum_16 DPLIMNTIRG G WALFASGLTA Site 236
N_vectensis_16 PGNLMQLYTA G YKIFGAGMTV Site 236
A_niger_11 --NKHMSLYT G FMHLAAGLSV Site 236
A_niger_16 EAFSGSNYYT G YALFWGGITV Site 236
C_parvum_3 ---NLYSAYT A YAQMSAGLVI Site 236
S_purpuratus_16 EETVAANYLA G YAIFGAGLTV Site 236
B_floridae_3 ---DAYTTYR S FLHLGAGLSV Site 236
Y_lipolytica_16 DVYTKSNMYT G FSLFWAGLTV Site 236
A_mellifera_3 ---KGYTLFK G FVHLGAGLAV Site 236
A_clavatus_16 ELFSGSNYYT G YALFWGGITV Site 236
A_clavatus_11 --TQNMSLYT G FMHLASGLSV Site 236
S_sclerotiorum_3 ----ELALYT G FIQLGAGLSV Site 236
P_falciparum_3 ---EGYSTFA G YAHLSSGLIV Site 236
Species Residue at Site 284
in 'msaprobs'
muscle

The residue for every species at site 284 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

D_discoideum_16 -WDPASDYMA G YMMFGAGITV Site 236
C_cinerea_okayama_11 ----NYSLFA G FVHLAAGLAC Site 236
D_hansenii_16 ELFTKENLYT G YSLFWAGLTV Site 236
D_hansenii_11 ---ENYSLFN G FMHLACGLSV Site 236
C_cinerea_okayama_16 VLYTRENYYT G FALFWGGLTV Site 236
P_vivax_3 ---AEYSTFS G YTHLSSGLIV Site 236
C_immitis_3 ----NKSLYT G FIQLGAGLSV Site 236
G_zeae_11 ---KNYSLFS G FMHLGCGIAV Site 236
C_neoformans_3 ----PMPLYT G FIQLGAGLSV Site 236
H_sapiens_3 ----DISLYK S FLQLGAGLSV Site 236
G_zeae_16 DLYAAESYYT G YALFWSGITV Site 236
Y_lipolytica_11 ---ENYSLFN G FMHLACGLSV Site 236
M_brevicollis_3 ----DYPLFN G FIHLGAGLAV Site 236
D_discoideum_3 ---ANYTLMK S FTDLGAGLTV Site 236
P_stipitis_16 DLFTKENLYT G YSLFWAGITV Site 236
C_albicans_16 SLYTKENLYT G YSLFWAGLTV Site 236
C_albicans_11 ---ENYSLFN G CMHLACGLAV Site 236
P_stipitis_11 ---ETYSLFN G IMHLACGLSV Site 236
X_laevis_3 ----TITLYK S FLQLGAGLSV Site 236
C_glabrata_11 ---EEYTLFN G FMHLSCGLCV Site 236
E_caballus_16 QAIGHRNYHA G YSMFGAGLTV Site 236
C_glabrata_16 SLYSKSNLYT G YSLFWAGLTV Site 236
V_polyspora_11 ---QDYTLFN G FMHLSCGLCV Site 236
V_polyspora_16 ALASKSNLYT G YSLFWAGLTV Site 236
C_hominis_16 DAWEVQIVKS S WILLCSGLTI Site 236
Species Residue at Site 284
in 'msaprobs'
muscle

The residue for every species at site 284 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

C_globosum_11 --GSNYSLFN G FMHLACGLSV Site 236
C_globosum_16 AAWSADTYYT G YALFWAGITV Site 236
O_mordax_16 ETIGARNYQA G YSMFGAGLTV Site 236
D_rerio_16 ETIGSKNYQA G YSMFGAGLTV Site 236
B_bovis_3 ---GSYSAYA G YSHLSAGLIV Site 236
B_floridae_16 REVRKANYMA G FSLFGAGLTV Site 236
M_musculus_3 ----GITLYR S FLQLGAGLSV Site 236
A_fumigatus_16 EIFSGSNYYT G YALFWGGITV Site 236
C_familiaris_16 QAIGHRNYHA G YSMFGAGLTV Site 236
K_lactis_11 ---EDYTLFN G FMHLSCGLCV Site 236
K_lactis_16 TMFDKSNLYT G YSIFWAGITV Site 236
B_taurus_16 KAIGHRNYHA G YSMFGAGLTV Site 236
S_sclerotiorum_16 NIYSASNYYT G YALFWSGITV Site 236
S_sclerotiorum_11 --GQSYSLFN G FMHLACGLSV Site 236
R_norvegicus_16 KAIGHRNYHA G YSMFGAGLTV Site 236

Generated by PhyloBot at 16:31, October 30th 2020
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