V-ATPase Ancestral Library

If you use these results in your work, please cite: Hanson-Smith and Johnson, PLoS Comp. Bio., 2016


Overview | Alignments | Sites | Trees | Ancestors | Mutations


Select an Alignment:

Select a Site:

Site 282 in Alignment 'msaprobs'


Similarity to Other Alignments

What percentage of the residues at this site are inferred to be a single site (i.e. homologous) in the alignments produced by other methods? A value of 100% indicates that the existence of site 282 is robust across multiple methods. Values less than 100% indicate that other alignment methods made different homology inferences.

Similarity of Site 282 in 'msaprobs'
to Sites in 'muscle'

What percentage of the residues at this site in msaprobs are inferred to be a single site (i.e. homologous) in the alignments produced by muscle? A value of 100% indicates that the existence of site 282 is reproduced using the muscle method. Values less than 100% indicate that muscle made different homology inferences for the residues at this site.


Species Residue at Site 282
in 'msaprobs'
muscle

The residue for every species at site 282 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

M_musculus_16 --KAIGHRNY H AGYSMFGAGL Site 234
O_mordax_3 ------KVSL Y KSFLHLGAGL Site 234
D_rerio_3 ------KISL Y KSFLHLGAGL Site 234
M_grisea_16 --GYYSANAY F TGYALFWSGL Site 234
M_grisea_11 ----GTSYDL F RGIMHLACGL Site 234
A_niger_3 ------KVPL Y TGFIQLGAGL Site 234
C_glabrata_3 ------KQAL Y TGFVQLGAGL Site 234
A_terreus_11 ----LQNTSL Y TGFMHLASGL Site 234
A_terreus_16 --EIYSGSSY Y TGFALFWGGI Site 234
C_parvum_16 --DAWEVQIV K SSWILLCSGL Site 234
T_adhaerens_3 ------EYTL F MSFVDLGAGL Site 234
T_castaneum_3 -----NNYSL Y KGFVHLGAGL Site 234
X_tropicalis_3 ------SITL Y KSFLQLGAGL Site 234
G_zeae_3 ------DLPL F TSFIQFGAGL Site 234
L_elongisporus_3 ------KQAL Y TGFIQLGAGL Site 234
A_fumigatus_3 ------SVPL Y TGFIQLGAGL Site 234
M_grisea_3 -----DEYAL F TGFIQLGAGL Site 234
S_pombe_3 ------ILSL Y SGFIQLGAGL Site 234
C_albicans_3 -----ENYSL F NGCMHLACGL Site 234
B_bovis_16 RITLLYFLEV H RGYVLFAIGL Site 234
C_muris_3 -----NFYSS Y LAYAQMSAGL Site 234
S_purpuratus_3 -----SAYTL Y KSFMHLGAGL Site 234
C_immitis_16 --TLYSGDNY Y TGYALFWGGL Site 234
M_mulatta_16 --KAIGHRNY H AGYSMFGAGL Site 234
Y_lipolytica_3 ------QSSL Y AGFIQLGAGL Site 234
Species Residue at Site 282
in 'msaprobs'
muscle

The residue for every species at site 282 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

B_fuckeliana_16 --NTYSASNY Y TGYALFWSGI Site 234
C_immitis_11 -----QNYSL Y AGFVHLAAGL Site 234
A_mellifera_16 --EEVRDQNW F AGYLMFGAGL Site 234
A_gossypii_11 -----EEYTL F NGFMHLAAGL Site 234
T_annulata_16 EITKLYYNDL F RGYSMLAVGL Site 234
N_vectensis_3 ------DYTL Y KSFLDLGAGL Site 234
S_Salar_16 --ETIGARNY Q AGYSMFGAGL Site 234
L_elongisporus_16 --LLYTKENL Y TGYSLFWAGL Site 234
C_neoformans_16 --NIYTANNY Y TGFALFWGGL Site 234
C_neoformans_11 -----EPYSL F AGFVHLAAGL Site 234
P_knowlesi_16 --DALIMNTI R GGWALFASGL Site 234
A_terreus_3 ------RLPL Y TGFIQLGAGL Site 234
A_pisum_3 -----SKYSL F KGFIHLGAGL Site 234
S_Salar_3 ------KVTL Y KSFLHLGAGL Site 234
P_marneffei_3 ------RLPL Y TGFIQLGAGL Site 234
P_stipitis_3 ------ELPL Y SGFIQLGAGL Site 234
A_fumigatus_11 ------TQNM S LGFMHLASGL Site 234
A_gossypii_3 ------KQAL Y TGFIQLGAGL Site 234
C_hominis_3 ------DYSL Y QGYCHLAAGL Site 234
C_muris_16 --TGWVAESI Q ASWIILTSGL Site 234
X_laevis_16 --EAIGNRNY H AGFSMFGAGL Site 234
M_mulatta_3 ------DISL Y RSSLQLSAGL Site 234
M_brevicollis_16 --GDISIKDA S TGYALFAGGI Site 234
K_lactis_3 ------KQAL Y TGFIQLGAGL Site 234
T_castaneum_16 --DEIKARNW L AGYSMFGAGV Site 234
Species Residue at Site 282
in 'msaprobs'
muscle

The residue for every species at site 282 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

C_intestinalis_16 --DSMMAQNI F AGYALFGAGL Site 234
E_caballus_3 ------DISL Y RSFLQLGAGL Site 234
C_globosum_3 -----DNYAL Y TGFIQLGAGL Site 234
A_clavatus_3 ------SLPL Y TGFIQLGAGL Site 234
N_crassa_11 ----GQHYSL F NGFMHLACGL Site 234
N_crassa_16 --QYYSGDSY Y TGFALFWAGL Site 234
X_tropicalis_16 --EAIGSRNY H AGFSMFGAGL Site 234
P_anserina_11 ---GGANYSL F NGFMHLACGL Site 234
P_vivax_16 --DALIMNTI R GGWALFASGL Site 234
P_anserina_16 --DVYSGSTY F TGYALFWAGL Site 234
H_sapiens_16 --KAIGHRNY H AGYSMFGAGL Site 234
T_annulata_3 -----GEYSH F LGYSHLAAGL Site 234
C_intestinalis_3 ------TMTL F AAFLHLGAGL Site 234
L_elongisporus_11 -----ENYSL F NGFMHLACGL Site 234
A_gossypii_16 --TLFSKSNL Y TGYSLFWAGI Site 234
A_pisum_16 --QQIRDQNW M AGYLIFAAGI Site 234
N_crassa_3 -----DHYAL Y TGFIQLGAGL Site 234
V_polyspora_3 ------KQAL Y TGFIQLGAGL Site 234
S_cerevisiae_3 ------KQAL Y TGFIQLGAGL Site 234
P_marneffei_16 --NVYSGSNM Y TGFSLFWGGI Site 234
D_hansenii_3 ------KQAL Y TGFIQLGAGL Site 234
S_pombe_11 -----NDYSL F SGFIHLSAGL Site 234
T_guttata_3 ------EITL F KSFLQLGAGL Site 234
S_pombe_16 --GFYTKSHY Y TGFALFWGGI Site 234
B_fuckeliana_3 ------HLAL Y TGFIQLGAGL Site 234
Species Residue at Site 282
in 'msaprobs'
muscle

The residue for every species at site 282 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

T_adhaerens_16 --SAILRQNY F GGYSIFAAGL Site 234
S_cerevisiae_16 --NMYSKSNL Y TGYSLFWAGI Site 234
R_norvegicus_3 ------GITL Y RSFLQLGAGL Site 234
S_cerevisiae_11 -----EDYTL F NGFMHLSCGL Site 234
B_taurus_3 ------GISL Y RSFLQLGAGL Site 234
C_familiaris_3 ------GISL Y RSFLQLGAGL Site 234
P_anserina_3 -----DSYAL Y TGFVQLGAGL Site 234
P_marneffei_11 ----GQNTSL Y TSFMHLASGL Site 234
P_knowlesi_3 -----AEYST F SGYTHLSSGL Site 234
T_guttata_16 --EEIGARNY H AGFSMFGAGL Site 234
B_fuckeliana_11 ----GQSYSL F NGFMHLACGL Site 234
C_cinerea_okayama_3 ------TMSL A QGFIQLGAGL Site 234
P_falciparum_16 --DPLIMNTI R GGWALFASGL Site 234
N_vectensis_16 --PGNLMQLY T AGYKIFGAGM Site 234
A_niger_11 ----NKHMSL Y TGFMHLAAGL Site 234
A_niger_16 --EAFSGSNY Y TGYALFWGGI Site 234
C_parvum_3 -----NLYSA Y TAYAQMSAGL Site 234
S_purpuratus_16 --EETVAANY L AGYAIFGAGL Site 234
B_floridae_3 -----DAYTT Y RSFLHLGAGL Site 234
Y_lipolytica_16 --DVYTKSNM Y TGFSLFWAGL Site 234
A_mellifera_3 -----KGYTL F KGFVHLGAGL Site 234
A_clavatus_16 --ELFSGSNY Y TGYALFWGGI Site 234
A_clavatus_11 ----TQNMSL Y TGFMHLASGL Site 234
S_sclerotiorum_3 ------ELAL Y TGFIQLGAGL Site 234
P_falciparum_3 -----EGYST F AGYAHLSSGL Site 234
Species Residue at Site 282
in 'msaprobs'
muscle

The residue for every species at site 282 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

D_discoideum_16 ---WDPASDY M AGYMMFGAGI Site 234
C_cinerea_okayama_11 ------NYSL F AGFVHLAAGL Site 234
D_hansenii_16 --ELFTKENL Y TGYSLFWAGL Site 234
D_hansenii_11 -----ENYSL F NGFMHLACGL Site 234
C_cinerea_okayama_16 --VLYTRENY Y TGFALFWGGL Site 234
P_vivax_3 -----AEYST F SGYTHLSSGL Site 234
C_immitis_3 ------NKSL Y TGFIQLGAGL Site 234
G_zeae_11 -----KNYSL F SGFMHLGCGI Site 234
C_neoformans_3 ------PMPL Y TGFIQLGAGL Site 234
H_sapiens_3 ------DISL Y KSFLQLGAGL Site 234
G_zeae_16 --DLYAAESY Y TGYALFWSGI Site 234
Y_lipolytica_11 -----ENYSL F NGFMHLACGL Site 234
M_brevicollis_3 ------DYPL F NGFIHLGAGL Site 234
D_discoideum_3 -----ANYTL M KSFTDLGAGL Site 234
P_stipitis_16 --DLFTKENL Y TGYSLFWAGI Site 234
C_albicans_16 --SLYTKENL Y TGYSLFWAGL Site 234
C_albicans_11 -----ENYSL F NGCMHLACGL Site 234
P_stipitis_11 -----ETYSL F NGIMHLACGL Site 234
X_laevis_3 ------TITL Y KSFLQLGAGL Site 234
C_glabrata_11 -----EEYTL F NGFMHLSCGL Site 234
E_caballus_16 --QAIGHRNY H AGYSMFGAGL Site 234
C_glabrata_16 --SLYSKSNL Y TGYSLFWAGL Site 234
V_polyspora_11 -----QDYTL F NGFMHLSCGL Site 234
V_polyspora_16 --ALASKSNL Y TGYSLFWAGL Site 234
C_hominis_16 --DAWEVQIV K SSWILLCSGL Site 234
Species Residue at Site 282
in 'msaprobs'
muscle

The residue for every species at site 282 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

C_globosum_11 ----GSNYSL F NGFMHLACGL Site 234
C_globosum_16 --AAWSADTY Y TGYALFWAGI Site 234
O_mordax_16 --ETIGARNY Q AGYSMFGAGL Site 234
D_rerio_16 --ETIGSKNY Q AGYSMFGAGL Site 234
B_bovis_3 -----GSYSA Y AGYSHLSAGL Site 234
B_floridae_16 --REVRKANY M AGFSLFGAGL Site 234
M_musculus_3 ------GITL Y RSFLQLGAGL Site 234
A_fumigatus_16 --EIFSGSNY Y TGYALFWGGI Site 234
C_familiaris_16 --QAIGHRNY H AGYSMFGAGL Site 234
K_lactis_11 -----EDYTL F NGFMHLSCGL Site 234
K_lactis_16 --TMFDKSNL Y TGYSIFWAGI Site 234
B_taurus_16 --KAIGHRNY H AGYSMFGAGL Site 234
S_sclerotiorum_16 --NIYSASNY Y TGYALFWSGI Site 234
S_sclerotiorum_11 ----GQSYSL F NGFMHLACGL Site 234
R_norvegicus_16 --KAIGHRNY H AGYSMFGAGL Site 234

Generated by PhyloBot at 15:42, October 30th 2020
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