V-ATPase Ancestral Library

If you use these results in your work, please cite: Hanson-Smith and Johnson, PLoS Comp. Bio., 2016


Overview | Alignments | Sites | Trees | Ancestors | Mutations


Select an Alignment:

Select a Site:

Site 281 in Alignment 'msaprobs'


Similarity to Other Alignments

What percentage of the residues at this site are inferred to be a single site (i.e. homologous) in the alignments produced by other methods? A value of 100% indicates that the existence of site 281 is robust across multiple methods. Values less than 100% indicate that other alignment methods made different homology inferences.

Similarity of Site 281 in 'msaprobs'
to Sites in 'muscle'

What percentage of the residues at this site in msaprobs are inferred to be a single site (i.e. homologous) in the alignments produced by muscle? A value of 100% indicates that the existence of site 281 is reproduced using the muscle method. Values less than 100% indicate that muscle made different homology inferences for the residues at this site.


Species Residue at Site 281
in 'msaprobs'
muscle

The residue for every species at site 281 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

M_musculus_16 ---KAIGHRN Y HAGYSMFGAG Site 233
O_mordax_3 -------KVS L YKSFLHLGAG Site 233
D_rerio_3 -------KIS L YKSFLHLGAG Site 233
M_grisea_16 ---GYYSANA Y FTGYALFWSG Site 233
M_grisea_11 -----GTSYD L FRGIMHLACG Site 233
A_niger_3 -------KVP L YTGFIQLGAG Site 233
C_glabrata_3 -------KQA L YTGFVQLGAG Site 233
A_terreus_11 -----LQNTS L YTGFMHLASG Site 233
A_terreus_16 ---EIYSGSS Y YTGFALFWGG Site 233
C_parvum_16 ---DAWEVQI V KSSWILLCSG Site 233
T_adhaerens_3 -------EYT L FMSFVDLGAG Site 233
T_castaneum_3 ------NNYS L YKGFVHLGAG Site 233
X_tropicalis_3 -------SIT L YKSFLQLGAG Site 233
G_zeae_3 -------DLP L FTSFIQFGAG Site 233
L_elongisporus_3 -------KQA L YTGFIQLGAG Site 233
A_fumigatus_3 -------SVP L YTGFIQLGAG Site 233
M_grisea_3 ------DEYA L FTGFIQLGAG Site 233
S_pombe_3 -------ILS L YSGFIQLGAG Site 233
C_albicans_3 ------ENYS L FNGCMHLACG Site 233
B_bovis_16 KRITLLYFLE V HRGYVLFAIG Site 233
C_muris_3 ------NFYS S YLAYAQMSAG Site 233
S_purpuratus_3 ------SAYT L YKSFMHLGAG Site 233
C_immitis_16 ---TLYSGDN Y YTGYALFWGG Site 233
M_mulatta_16 ---KAIGHRN Y HAGYSMFGAG Site 233
Y_lipolytica_3 -------QSS L YAGFIQLGAG Site 233
Species Residue at Site 281
in 'msaprobs'
muscle

The residue for every species at site 281 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

B_fuckeliana_16 ---NTYSASN Y YTGYALFWSG Site 233
C_immitis_11 ------QNYS L YAGFVHLAAG Site 233
A_mellifera_16 ---EEVRDQN W FAGYLMFGAG Site 233
A_gossypii_11 ------EEYT L FNGFMHLAAG Site 233
T_annulata_16 KEITKLYYND L FRGYSMLAVG Site 233
N_vectensis_3 -------DYT L YKSFLDLGAG Site 233
S_Salar_16 ---ETIGARN Y QAGYSMFGAG Site 233
L_elongisporus_16 ---LLYTKEN L YTGYSLFWAG Site 233
C_neoformans_16 ---NIYTANN Y YTGFALFWGG Site 233
C_neoformans_11 ------EPYS L FAGFVHLAAG Site 233
P_knowlesi_16 ---DALIMNT I RGGWALFASG Site 233
A_terreus_3 -------RLP L YTGFIQLGAG Site 233
A_pisum_3 ------SKYS L FKGFIHLGAG Site 233
S_Salar_3 -------KVT L YKSFLHLGAG Site 233
P_marneffei_3 -------RLP L YTGFIQLGAG Site 233
P_stipitis_3 -------ELP L YSGFIQLGAG Site 233
A_fumigatus_11 -------TQN M SLGFMHLASG Site 233
A_gossypii_3 -------KQA L YTGFIQLGAG Site 233
C_hominis_3 -------DYS L YQGYCHLAAG Site 233
C_muris_16 ---TGWVAES I QASWIILTSG Site 233
X_laevis_16 ---EAIGNRN Y HAGFSMFGAG Site 233
M_mulatta_3 -------DIS L YRSSLQLSAG Site 233
M_brevicollis_16 ---GDISIKD A STGYALFAGG Site 233
K_lactis_3 -------KQA L YTGFIQLGAG Site 233
T_castaneum_16 ---DEIKARN W LAGYSMFGAG Site 233
Species Residue at Site 281
in 'msaprobs'
muscle

The residue for every species at site 281 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

C_intestinalis_16 ---DSMMAQN I FAGYALFGAG Site 233
E_caballus_3 -------DIS L YRSFLQLGAG Site 233
C_globosum_3 ------DNYA L YTGFIQLGAG Site 233
A_clavatus_3 -------SLP L YTGFIQLGAG Site 233
N_crassa_11 -----GQHYS L FNGFMHLACG Site 233
N_crassa_16 ---QYYSGDS Y YTGFALFWAG Site 233
X_tropicalis_16 ---EAIGSRN Y HAGFSMFGAG Site 233
P_anserina_11 ----GGANYS L FNGFMHLACG Site 233
P_vivax_16 ---DALIMNT I RGGWALFASG Site 233
P_anserina_16 ---DVYSGST Y FTGYALFWAG Site 233
H_sapiens_16 ---KAIGHRN Y HAGYSMFGAG Site 233
T_annulata_3 ------GEYS H FLGYSHLAAG Site 233
C_intestinalis_3 -------TMT L FAAFLHLGAG Site 233
L_elongisporus_11 ------ENYS L FNGFMHLACG Site 233
A_gossypii_16 ---TLFSKSN L YTGYSLFWAG Site 233
A_pisum_16 ---QQIRDQN W MAGYLIFAAG Site 233
N_crassa_3 ------DHYA L YTGFIQLGAG Site 233
V_polyspora_3 -------KQA L YTGFIQLGAG Site 233
S_cerevisiae_3 -------KQA L YTGFIQLGAG Site 233
P_marneffei_16 ---NVYSGSN M YTGFSLFWGG Site 233
D_hansenii_3 -------KQA L YTGFIQLGAG Site 233
S_pombe_11 ------NDYS L FSGFIHLSAG Site 233
T_guttata_3 -------EIT L FKSFLQLGAG Site 233
S_pombe_16 ---GFYTKSH Y YTGFALFWGG Site 233
B_fuckeliana_3 -------HLA L YTGFIQLGAG Site 233
Species Residue at Site 281
in 'msaprobs'
muscle

The residue for every species at site 281 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

T_adhaerens_16 ---SAILRQN Y FGGYSIFAAG Site 233
S_cerevisiae_16 ---NMYSKSN L YTGYSLFWAG Site 233
R_norvegicus_3 -------GIT L YRSFLQLGAG Site 233
S_cerevisiae_11 ------EDYT L FNGFMHLSCG Site 233
B_taurus_3 -------GIS L YRSFLQLGAG Site 233
C_familiaris_3 -------GIS L YRSFLQLGAG Site 233
P_anserina_3 ------DSYA L YTGFVQLGAG Site 233
P_marneffei_11 -----GQNTS L YTSFMHLASG Site 233
P_knowlesi_3 ------AEYS T FSGYTHLSSG Site 233
T_guttata_16 ---EEIGARN Y HAGFSMFGAG Site 233
B_fuckeliana_11 -----GQSYS L FNGFMHLACG Site 233
C_cinerea_okayama_3 -------TMS L AQGFIQLGAG Site 233
P_falciparum_16 ---DPLIMNT I RGGWALFASG Site 233
N_vectensis_16 ---PGNLMQL Y TAGYKIFGAG Site 233
A_niger_11 -----NKHMS L YTGFMHLAAG Site 233
A_niger_16 ---EAFSGSN Y YTGYALFWGG Site 233
C_parvum_3 ------NLYS A YTAYAQMSAG Site 233
S_purpuratus_16 ---EETVAAN Y LAGYAIFGAG Site 233
B_floridae_3 ------DAYT T YRSFLHLGAG Site 233
Y_lipolytica_16 ---DVYTKSN M YTGFSLFWAG Site 233
A_mellifera_3 ------KGYT L FKGFVHLGAG Site 233
A_clavatus_16 ---ELFSGSN Y YTGYALFWGG Site 233
A_clavatus_11 -----TQNMS L YTGFMHLASG Site 233
S_sclerotiorum_3 -------ELA L YTGFIQLGAG Site 233
P_falciparum_3 ------EGYS T FAGYAHLSSG Site 233
Species Residue at Site 281
in 'msaprobs'
muscle

The residue for every species at site 281 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

D_discoideum_16 ----WDPASD Y MAGYMMFGAG Site 233
C_cinerea_okayama_11 -------NYS L FAGFVHLAAG Site 233
D_hansenii_16 ---ELFTKEN L YTGYSLFWAG Site 233
D_hansenii_11 ------ENYS L FNGFMHLACG Site 233
C_cinerea_okayama_16 ---VLYTREN Y YTGFALFWGG Site 233
P_vivax_3 ------AEYS T FSGYTHLSSG Site 233
C_immitis_3 -------NKS L YTGFIQLGAG Site 233
G_zeae_11 ------KNYS L FSGFMHLGCG Site 233
C_neoformans_3 -------PMP L YTGFIQLGAG Site 233
H_sapiens_3 -------DIS L YKSFLQLGAG Site 233
G_zeae_16 ---DLYAAES Y YTGYALFWSG Site 233
Y_lipolytica_11 ------ENYS L FNGFMHLACG Site 233
M_brevicollis_3 -------DYP L FNGFIHLGAG Site 233
D_discoideum_3 ------ANYT L MKSFTDLGAG Site 233
P_stipitis_16 ---DLFTKEN L YTGYSLFWAG Site 233
C_albicans_16 ---SLYTKEN L YTGYSLFWAG Site 233
C_albicans_11 ------ENYS L FNGCMHLACG Site 233
P_stipitis_11 ------ETYS L FNGIMHLACG Site 233
X_laevis_3 -------TIT L YKSFLQLGAG Site 233
C_glabrata_11 ------EEYT L FNGFMHLSCG Site 233
E_caballus_16 ---QAIGHRN Y HAGYSMFGAG Site 233
C_glabrata_16 ---SLYSKSN L YTGYSLFWAG Site 233
V_polyspora_11 ------QDYT L FNGFMHLSCG Site 233
V_polyspora_16 ---ALASKSN L YTGYSLFWAG Site 233
C_hominis_16 ---DAWEVQI V KSSWILLCSG Site 233
Species Residue at Site 281
in 'msaprobs'
muscle

The residue for every species at site 281 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

C_globosum_11 -----GSNYS L FNGFMHLACG Site 233
C_globosum_16 ---AAWSADT Y YTGYALFWAG Site 233
O_mordax_16 ---ETIGARN Y QAGYSMFGAG Site 233
D_rerio_16 ---ETIGSKN Y QAGYSMFGAG Site 233
B_bovis_3 ------GSYS A YAGYSHLSAG Site 233
B_floridae_16 ---REVRKAN Y MAGFSLFGAG Site 233
M_musculus_3 -------GIT L YRSFLQLGAG Site 233
A_fumigatus_16 ---EIFSGSN Y YTGYALFWGG Site 233
C_familiaris_16 ---QAIGHRN Y HAGYSMFGAG Site 233
K_lactis_11 ------EDYT L FNGFMHLSCG Site 233
K_lactis_16 ---TMFDKSN L YTGYSIFWAG Site 233
B_taurus_16 ---KAIGHRN Y HAGYSMFGAG Site 233
S_sclerotiorum_16 ---NIYSASN Y YTGYALFWSG Site 233
S_sclerotiorum_11 -----GQSYS L FNGFMHLACG Site 233
R_norvegicus_16 ---KAIGHRN Y HAGYSMFGAG Site 233

Generated by PhyloBot at 16:09, October 30th 2020
Questions/Comments? help@phylobot.com