V-ATPase Ancestral Library

If you use these results in your work, please cite: Hanson-Smith and Johnson, PLoS Comp. Bio., 2016


Overview | Alignments | Sites | Trees | Ancestors | Mutations


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Select a Site:

Site 279 in Alignment 'msaprobs'


Similarity to Other Alignments

What percentage of the residues at this site are inferred to be a single site (i.e. homologous) in the alignments produced by other methods? A value of 100% indicates that the existence of site 279 is robust across multiple methods. Values less than 100% indicate that other alignment methods made different homology inferences.

Similarity of Site 279 in 'msaprobs'
to Sites in 'muscle'

What percentage of the residues at this site in msaprobs are inferred to be a single site (i.e. homologous) in the alignments produced by muscle? A value of 100% indicates that the existence of site 279 is reproduced using the muscle method. Values less than 100% indicate that muscle made different homology inferences for the residues at this site.


Species Residue at Site 279
in 'msaprobs'
muscle

The residue for every species at site 279 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

M_musculus_16 -----KAIGH R NYHAGYSMFG Site 222
O_mordax_3 ---------K V SLYKSFLHLG Site 213
D_rerio_3 ---------K I SLYKSFLHLG Site 213
M_grisea_16 -----GYYSA N AYFTGYALFW Site 222
M_grisea_11 -------GTS Y DLFRGIMHLA Site 216
A_niger_3 ---------K V PLYTGFIQLG Site 213
C_glabrata_3 ---------K Q ALYTGFVQLG Site 213
A_terreus_11 -------LQN T SLYTGFMHLA Site 216
A_terreus_16 -----EIYSG S SYYTGFALFW Site 222
C_parvum_16 -----DAWEV Q IVKSSWILLC Site 222
T_adhaerens_3 ---------E Y TLFMSFVDLG Site 216
T_castaneum_3 --------NN Y SLYKGFVHLG Site 216
X_tropicalis_3 ---------S I TLYKSFLQLG Site 213
G_zeae_3 ---------D L PLFTSFIQFG Site 213
L_elongisporus_3 ---------K Q ALYTGFIQLG Site 213
A_fumigatus_3 ---------S V PLYTGFIQLG Site 213
M_grisea_3 --------DE Y ALFTGFIQLG Site 216
S_pombe_3 ---------I L SLYSGFIQLG Site 213
C_albicans_3 --------EN Y SLFNGCMHLA Site 216
B_bovis_16 ADKRITLLYF L EVHRGYVLFA Site 231
C_muris_3 --------NF Y SSYLAYAQMS Site 216
S_purpuratus_3 --------SA Y TLYKSFMHLG Site 216
C_immitis_16 -----TLYSG D NYYTGYALFW Site 222
M_mulatta_16 -----KAIGH R NYHAGYSMFG Site 222
Y_lipolytica_3 ---------Q S SLYAGFIQLG Site 213
Species Residue at Site 279
in 'msaprobs'
muscle

The residue for every species at site 279 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

B_fuckeliana_16 -----NTYSA S NYYTGYALFW Site 222
C_immitis_11 --------QN Y SLYAGFVHLA Site 216
A_mellifera_16 -----EEVRD Q NWFAGYLMFG Site 222
A_gossypii_11 --------EE Y TLFNGFMHLA Site 216
T_annulata_16 LDKEITKLYY N DLFRGYSMLA Site 231
N_vectensis_3 ---------D Y TLYKSFLDLG Site 216
S_Salar_16 -----ETIGA R NYQAGYSMFG Site 222
L_elongisporus_16 -----LLYTK E NLYTGYSLFW Site 222
C_neoformans_16 -----NIYTA N NYYTGFALFW Site 222
C_neoformans_11 --------EP Y SLFAGFVHLA Site 216
P_knowlesi_16 -----DALIM N TIRGGWALFA Site 231
A_terreus_3 ---------R L PLYTGFIQLG Site 213
A_pisum_3 --------SK Y SLFKGFIHLG Site 216
S_Salar_3 ---------K V TLYKSFLHLG Site 213
P_marneffei_3 ---------R L PLYTGFIQLG Site 213
P_stipitis_3 ---------E L PLYSGFIQLG Site 213
A_fumigatus_11 ---------T Q NMSLGFMHLA Site 216
A_gossypii_3 ---------K Q ALYTGFIQLG Site 213
C_hominis_3 ---------D Y SLYQGYCHLA Site 216
C_muris_16 -----TGWVA E SIQASWIILT Site 222
X_laevis_16 -----EAIGN R NYHAGFSMFG Site 222
M_mulatta_3 ---------D I SLYRSSLQLS Site 213
M_brevicollis_16 -----GDISI K DASTGYALFA Site 222
K_lactis_3 ---------K Q ALYTGFIQLG Site 213
T_castaneum_16 -----DEIKA R NWLAGYSMFG Site 222
Species Residue at Site 279
in 'msaprobs'
muscle

The residue for every species at site 279 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

C_intestinalis_16 -----DSMMA Q NIFAGYALFG Site 222
E_caballus_3 ---------D I SLYRSFLQLG Site 213
C_globosum_3 --------DN Y ALYTGFIQLG Site 216
A_clavatus_3 ---------S L PLYTGFIQLG Site 213
N_crassa_11 -------GQH Y SLFNGFMHLA Site 216
N_crassa_16 -----QYYSG D SYYTGFALFW Site 222
X_tropicalis_16 -----EAIGS R NYHAGFSMFG Site 222
P_anserina_11 ------GGAN Y SLFNGFMHLA Site 216
P_vivax_16 -----DALIM N TIRGGWALFA Site 231
P_anserina_16 -----DVYSG S TYFTGYALFW Site 222
H_sapiens_16 -----KAIGH R NYHAGYSMFG Site 222
T_annulata_3 --------GE Y SHFLGYSHLA Site 216
C_intestinalis_3 ---------T M TLFAAFLHLG Site 213
L_elongisporus_11 --------EN Y SLFNGFMHLA Site 216
A_gossypii_16 -----TLFSK S NLYTGYSLFW Site 222
A_pisum_16 -----QQIRD Q NWMAGYLIFA Site 222
N_crassa_3 --------DH Y ALYTGFIQLG Site 216
V_polyspora_3 ---------K Q ALYTGFIQLG Site 213
S_cerevisiae_3 ---------K Q ALYTGFIQLG Site 213
P_marneffei_16 -----NVYSG S NMYTGFSLFW Site 222
D_hansenii_3 ---------K Q ALYTGFIQLG Site 213
S_pombe_11 --------ND Y SLFSGFIHLS Site 216
T_guttata_3 ---------E I TLFKSFLQLG Site 213
S_pombe_16 -----GFYTK S HYYTGFALFW Site 222
B_fuckeliana_3 ---------H L ALYTGFIQLG Site 213
Species Residue at Site 279
in 'msaprobs'
muscle

The residue for every species at site 279 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

T_adhaerens_16 -----SAILR Q NYFGGYSIFA Site 222
S_cerevisiae_16 -----NMYSK S NLYTGYSLFW Site 222
R_norvegicus_3 ---------G I TLYRSFLQLG Site 213
S_cerevisiae_11 --------ED Y TLFNGFMHLS Site 216
B_taurus_3 ---------G I SLYRSFLQLG Site 213
C_familiaris_3 ---------G I SLYRSFLQLG Site 213
P_anserina_3 --------DS Y ALYTGFVQLG Site 216
P_marneffei_11 -------GQN T SLYTSFMHLA Site 216
P_knowlesi_3 --------AE Y STFSGYTHLS Site 216
T_guttata_16 -----EEIGA R NYHAGFSMFG Site 222
B_fuckeliana_11 -------GQS Y SLFNGFMHLA Site 216
C_cinerea_okayama_3 ---------T M SLAQGFIQLG Site 213
P_falciparum_16 -----DPLIM N TIRGGWALFA Site 231
N_vectensis_16 -----PGNLM Q LYTAGYKIFG Site 221
A_niger_11 -------NKH M SLYTGFMHLA Site 216
A_niger_16 -----EAFSG S NYYTGYALFW Site 222
C_parvum_3 --------NL Y SAYTAYAQMS Site 216
S_purpuratus_16 -----EETVA A NYLAGYAIFG Site 222
B_floridae_3 --------DA Y TTYRSFLHLG Site 216
Y_lipolytica_16 -----DVYTK S NMYTGFSLFW Site 222
A_mellifera_3 --------KG Y TLFKGFVHLG Site 216
A_clavatus_16 -----ELFSG S NYYTGYALFW Site 222
A_clavatus_11 -------TQN M SLYTGFMHLA Site 216
S_sclerotiorum_3 ---------E L ALYTGFIQLG Site 213
P_falciparum_3 --------EG Y STFAGYAHLS Site 216
Species Residue at Site 279
in 'msaprobs'
muscle

The residue for every species at site 279 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

D_discoideum_16 ------WDPA S DYMAGYMMFG Site 222
C_cinerea_okayama_11 ---------N Y SLFAGFVHLA Site 216
D_hansenii_16 -----ELFTK E NLYTGYSLFW Site 222
D_hansenii_11 --------EN Y SLFNGFMHLA Site 216
C_cinerea_okayama_16 -----VLYTR E NYYTGFALFW Site 222
P_vivax_3 --------AE Y STFSGYTHLS Site 216
C_immitis_3 ---------N K SLYTGFIQLG Site 213
G_zeae_11 --------KN Y SLFSGFMHLG Site 216
C_neoformans_3 ---------P M PLYTGFIQLG Site 213
H_sapiens_3 ---------D I SLYKSFLQLG Site 213
G_zeae_16 -----DLYAA E SYYTGYALFW Site 222
Y_lipolytica_11 --------EN Y SLFNGFMHLA Site 216
M_brevicollis_3 ---------D Y PLFNGFIHLG Site 216
D_discoideum_3 --------AN Y TLMKSFTDLG Site 216
P_stipitis_16 -----DLFTK E NLYTGYSLFW Site 222
C_albicans_16 -----SLYTK E NLYTGYSLFW Site 222
C_albicans_11 --------EN Y SLFNGCMHLA Site 216
P_stipitis_11 --------ET Y SLFNGIMHLA Site 216
X_laevis_3 ---------T I TLYKSFLQLG Site 213
C_glabrata_11 --------EE Y TLFNGFMHLS Site 216
E_caballus_16 -----QAIGH R NYHAGYSMFG Site 222
C_glabrata_16 -----SLYSK S NLYTGYSLFW Site 222
V_polyspora_11 --------QD Y TLFNGFMHLS Site 216
V_polyspora_16 -----ALASK S NLYTGYSLFW Site 222
C_hominis_16 -----DAWEV Q IVKSSWILLC Site 222
Species Residue at Site 279
in 'msaprobs'
muscle

The residue for every species at site 279 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

C_globosum_11 -------GSN Y SLFNGFMHLA Site 216
C_globosum_16 -----AAWSA D TYYTGYALFW Site 222
O_mordax_16 -----ETIGA R NYQAGYSMFG Site 222
D_rerio_16 -----ETIGS K NYQAGYSMFG Site 222
B_bovis_3 --------GS Y SAYAGYSHLS Site 216
B_floridae_16 -----REVRK A NYMAGFSLFG Site 222
M_musculus_3 ---------G I TLYRSFLQLG Site 213
A_fumigatus_16 -----EIFSG S NYYTGYALFW Site 222
C_familiaris_16 -----QAIGH R NYHAGYSMFG Site 222
K_lactis_11 --------ED Y TLFNGFMHLS Site 216
K_lactis_16 -----TMFDK S NLYTGYSIFW Site 222
B_taurus_16 -----KAIGH R NYHAGYSMFG Site 222
S_sclerotiorum_16 -----NIYSA S NYYTGYALFW Site 222
S_sclerotiorum_11 -------GQS Y SLFNGFMHLA Site 216
R_norvegicus_16 -----KAIGH R NYHAGYSMFG Site 222

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