V-ATPase Ancestral Library

If you use these results in your work, please cite: Hanson-Smith and Johnson, PLoS Comp. Bio., 2016


Overview | Alignments | Sites | Trees | Ancestors | Mutations


Select an Alignment:

Select a Site:

Site 241 in Alignment 'msaprobs'


Similarity to Other Alignments

What percentage of the residues at this site are inferred to be a single site (i.e. homologous) in the alignments produced by other methods? A value of 100% indicates that the existence of site 241 is robust across multiple methods. Values less than 100% indicate that other alignment methods made different homology inferences.

Similarity of Site 241 in 'msaprobs'
to Sites in 'muscle'

What percentage of the residues at this site in msaprobs are inferred to be a single site (i.e. homologous) in the alignments produced by muscle? A value of 100% indicates that the existence of site 241 is reproduced using the muscle method. Values less than 100% indicate that muscle made different homology inferences for the residues at this site.


Species Residue at Site 241
in 'msaprobs'
muscle

The residue for every species at site 241 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

M_musculus_16 GIIMAIVISN M AEPFSAT--- Site 200
O_mordax_3 GLVVAVLIAN N ISE------- Site 200
D_rerio_3 GLVVAVLIAN N IGD------- Site 200
M_grisea_16 GVIMAIVFQA K INTLDRT--- Site 200
M_grisea_11 ALVVAVLIAQ D LNAPTA---- Site 200
A_niger_3 GLVVSVLIAN D LGQ------- Site 200
C_glabrata_3 GLVVSVLISS S LTQ------- Site 200
A_terreus_11 GLVIAVLIAG D MQPPP----- Site 200
A_terreus_16 GVIIAIVYSS K LNLITND--- Site 200
C_parvum_16 GVIATFLLMS K IRSLPDIDII Site 200
T_adhaerens_3 GLVVAVLIAN R IKPT------ Site 200
T_castaneum_3 GLVIAVLIAG G IDSAA----- Site 200
X_tropicalis_3 GLVVAVLIAN S LTS------- Site 200
G_zeae_3 GLVVSVLISD G LKQ------- Site 200
L_elongisporus_3 GLVVSVLVSD S LAQ------- Site 200
A_fumigatus_3 GLVVSVLIAN D LGQ------- Site 200
M_grisea_3 GLVVSVLISD N LKQ------- Site 200
S_pombe_3 GLVVSVLISG N LKQ------- Site 200
C_albicans_3 GLVVSVLIAG G LSPQ------ Site 200
B_bovis_16 GLIVAVLLLN A SLGFTAT--- Site 200
C_muris_3 GLIGALVIFF V MGEP------ Site 200
S_purpuratus_3 GLVVAAVIAN G IPSDP----- Site 200
C_immitis_16 GVIMSIVFSS K VFYVPGE--- Site 200
M_mulatta_16 GIIMAIVISN M AEPFSAT--- Site 200
Y_lipolytica_3 GLVVSVLISG S LQQ------- Site 200
Species Residue at Site 241
in 'msaprobs'
muscle

The residue for every species at site 241 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

B_fuckeliana_16 GVIMSIVFSS K LGLMESE--- Site 200
C_immitis_11 GLVVAVLIAG D IGTPA----- Site 200
A_mellifera_16 GLITAIVLSG M LEKFTAE--- Site 200
A_gossypii_11 GLVVAVLVAG G LSPT------ Site 200
T_annulata_16 GLIVSVLLMN I ASRFTGE--- Site 200
N_vectensis_3 GLVVAVLIGS S ISK------- Site 200
S_Salar_16 GIIMAIVISN M AESFSGT--- Site 200
L_elongisporus_16 GLIMAIVFSS K LTSVSSD--- Site 200
C_neoformans_16 GVIMAIVFSS K INGDVP---- Site 200
C_neoformans_11 GLVVSVLIAG N ISPS------ Site 200
P_knowlesi_16 GVITAVFLQI K FSGLNKE--- Site 200
A_terreus_3 GLVVSVLIAN N LGQ------- Site 200
A_pisum_3 GLVVAVLIAG A LEEP------ Site 200
S_Salar_3 GLVVAVLIAN N ISE------- Site 200
P_marneffei_3 GLVVSVLIAN D LNQ------- Site 200
P_stipitis_3 GLVVSVLVSD G LKQ------- Site 200
A_fumigatus_11 GLVIAVLIAG D MAPPP----- Site 200
A_gossypii_3 GLVVSVLVCY S LGQ------- Site 200
C_hominis_3 GLIVGVIICS Q IRT------- Site 200
C_muris_16 GVIATFLLAA R VRSLPDVEI- Site 200
X_laevis_16 GIIMAIVISN M AEQFKGT--- Site 200
M_mulatta_3 GLVVAVLIAS S LND------- Site 200
M_brevicollis_16 GIIMAIVFTN A FKEFTIF--S Site 200
K_lactis_3 GLVVSVLVCY S LGQ------- Site 200
T_castaneum_16 GLITAIVLSG Y LEKFTWS--- Site 200
Species Residue at Site 241
in 'msaprobs'
muscle

The residue for every species at site 241 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

C_intestinalis_16 GIIISIVMSN Y LKYFDPN--- Site 200
E_caballus_3 GLVVAVLIAN S LND------- Site 200
C_globosum_3 GLVVSVLISD G LAQ------- Site 200
A_clavatus_3 GLVVSVLIAN D LAQ------- Site 200
N_crassa_11 ALVVAVLIAQ D LGPPGS---- Site 200
N_crassa_16 GVIMAIVFSA K LQPVTGA--- Site 200
X_tropicalis_16 GIIMAIVISN M AEQFKGT--- Site 200
P_anserina_11 ALVISVLIAQ D LAPPDA---- Site 200
P_vivax_16 GVITAVFLQI K FSGLSKE--- Site 200
P_anserina_16 GVIMAIVFSA K LAPVEGA--- Site 200
H_sapiens_16 GIIMAIVISN M AEPFSAT--- Site 200
T_annulata_3 GLIISIVITG N YGEP------ Site 200
C_intestinalis_3 GVVIAVLISQ K MKA------- Site 200
L_elongisporus_11 GLVVAVLIAG G LSPT------ Site 200
A_gossypii_16 GLIMAIVFSS K LTVATPE--- Site 200
A_pisum_16 GLITAIVMSG Q LESFTDN--- Site 200
N_crassa_3 GLVVSVLISD A LTQ------- Site 200
V_polyspora_3 GLVVSVLISS S LTQ------- Site 200
S_cerevisiae_3 GLVVSVLVCY S LGQ------- Site 200
P_marneffei_16 GVIMAIVFSS K LNFVDPV--- Site 200
D_hansenii_3 GLVVSVLVTD S LKQ------- Site 200
S_pombe_11 GLVMSVLIAG D MSPD------ Site 200
T_guttata_3 GLVVAVLIAN A LSP------- Site 200
S_pombe_16 SLIIAIVFSA K INDINPA--- Site 200
B_fuckeliana_3 GLVVSVLISD G LKQ------- Site 200
Species Residue at Site 241
in 'msaprobs'
muscle

The residue for every species at site 241 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

T_adhaerens_16 GIIMAIVLSN N IAPYDTT--- Site 200
S_cerevisiae_16 GLIIAIVFSS K LTVATAE--- Site 200
R_norvegicus_3 GLVVAVLIAN S LTD------- Site 200
S_cerevisiae_11 GLVVAVLIAG N LSPT------ Site 200
B_taurus_3 GLVVAVLIAN S LND------- Site 200
C_familiaris_3 GLVVAVLIAN S LND------- Site 200
P_anserina_3 GLVVSVLISD A LTQ------- Site 200
P_marneffei_11 GLVVAVLIAN A MNPPP----- Site 200
P_knowlesi_3 GIIMSILIYG K MSPA------ Site 200
T_guttata_16 GIIMAIVISN M AEPFNGV--- Site 200
B_fuckeliana_11 SLVIAVLIAG D MGPPP----- Site 200
C_cinerea_okayama_3 GLVVSVLIAN N LSI------- Site 200
P_falciparum_16 GVITAVFLQI K FSGLSTE--- Site 200
N_vectensis_16 GIIMSIVLSN S VTVSPLE--- Site 198
A_niger_11 GLVISVLIAG D MDPPP----- Site 200
A_niger_16 GVIMAIVFSS K LNLVEGD--- Site 200
C_parvum_3 GLIGSLVIFF Q MGEP------ Site 200
S_purpuratus_16 GIIMAIVLSG L VKDFGTN--- Site 200
B_floridae_3 GLVVAVLIGS N MDNT------ Site 200
Y_lipolytica_16 GLIMAIVFSA K LASVE----- Site 200
A_mellifera_3 GLVVAVLIAG G LEEP------ Site 200
A_clavatus_16 GVIMAIVFSS K LNLVEGD--- Site 200
A_clavatus_11 GLVIAVLIAG D MAPPP----- Site 200
S_sclerotiorum_3 GLVVSVLISD G LKQ------- Site 200
P_falciparum_3 GIIMSILIYG K MTPA------ Site 200
Species Residue at Site 241
in 'msaprobs'
muscle

The residue for every species at site 241 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

D_discoideum_16 GIILAIILNG K IDKFLNI--- Site 200
C_cinerea_okayama_11 GLVVSVLISG S ISN------- Site 200
D_hansenii_16 GLIMAIVFSS K LTNVPQT--- Site 200
D_hansenii_11 GLVVSVLIAG G LSPT------ Site 200
C_cinerea_okayama_16 GVIIGIVYSA K LTNVAED--- Site 200
P_vivax_3 GIIMSILIYG K MTPA------ Site 200
C_immitis_3 GLVVSVLIAN D LGQ------- Site 200
G_zeae_11 SLVISVLIAE D LDPS------ Site 200
C_neoformans_3 GLVVSVLISG N LAS------- Site 200
H_sapiens_3 GLVVAVLIAN S LND------- Site 200
G_zeae_16 GVIMAIVFSQ K VENVSGA--- Site 200
Y_lipolytica_11 GLVVSVLIAG S LSPT------ Site 200
M_brevicollis_3 GLVVSVLIAN N IGT------- Site 200
D_discoideum_3 GLIICVILVG G IKPN------ Site 200
P_stipitis_16 GLIMAIVFSS K LTSVPTS--- Site 200
C_albicans_16 GLIMAIVFSA K LTSVPSK--- Site 200
C_albicans_11 GLVVSVLIAG G LSPQ------ Site 200
P_stipitis_11 GLVVAVLIAG G LAPT------ Site 200
X_laevis_3 GLVVAVLIAN S LTQ------- Site 200
C_glabrata_11 GLVVAVLIAG N LSPT------ Site 200
E_caballus_16 GIIMAIVISN M AEPFSAT--- Site 200
C_glabrata_16 GLIMAIVFSS K LTVSSKD--- Site 200
V_polyspora_11 GLVVAVLIAG S LNPA------ Site 200
V_polyspora_16 GLIIAIIFSS K ASFASGD--- Site 200
C_hominis_16 GVIATFLLMS K IRSLPDIDII Site 200
Species Residue at Site 241
in 'msaprobs'
muscle

The residue for every species at site 241 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

C_globosum_11 SLVISVLIAQ D LQPPAS---- Site 200
C_globosum_16 GVIMAIVFSA K INPVEGE--- Site 200
O_mordax_16 GIIMAIVISN M AENFSGT--- Site 200
D_rerio_16 GIIMAIVISN L AENFSGT--- Site 200
B_bovis_3 GLIMAVIIVL N MGHP------ Site 200
B_floridae_16 GIIMAIVMLQ I IEPYDAE--- Site 200
M_musculus_3 GLVVAVLIAN S LTD------- Site 200
A_fumigatus_16 GVIMAIVFSS K LNLVEGD--- Site 200
C_familiaris_16 GIIMAIVISN M AEPFSAT--- Site 200
K_lactis_11 GLVVAVLIAG G LSPT------ Site 200
K_lactis_16 GLIMAIVFSS K VTVANSA--- Site 200
B_taurus_16 GIIMAIVISN M AEPFSAT--- Site 200
S_sclerotiorum_16 GVIMSIVFSS K LGLMESE--- Site 200
S_sclerotiorum_11 SLVIAVLIAG D IGPPP----- Site 200
R_norvegicus_16 GIIMAIVISN M AEPFSAT--- Site 200

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