V-ATPase Ancestral Library

If you use these results in your work, please cite: Hanson-Smith and Johnson, PLoS Comp. Bio., 2016


Overview | Alignments | Sites | Trees | Ancestors | Mutations


Select an Alignment:

Select a Site:

Site 235 in Alignment 'msaprobs'


Similarity to Other Alignments

What percentage of the residues at this site are inferred to be a single site (i.e. homologous) in the alignments produced by other methods? A value of 100% indicates that the existence of site 235 is robust across multiple methods. Values less than 100% indicate that other alignment methods made different homology inferences.

Similarity of Site 235 in 'msaprobs'
to Sites in 'muscle'

What percentage of the residues at this site in msaprobs are inferred to be a single site (i.e. homologous) in the alignments produced by muscle? A value of 100% indicates that the existence of site 235 is reproduced using the muscle method. Values less than 100% indicate that muscle made different homology inferences for the residues at this site.


Species Residue at Site 235
in 'msaprobs'
muscle

The residue for every species at site 235 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

M_musculus_16 EAVAIYGIIM A IVISNMAEPF Site 192
O_mordax_3 GIIAIYGLVV A VLIANNISE- Site 192
D_rerio_3 GIIAIYGLVV A VLIANNIGD- Site 192
M_grisea_16 EVVAIYGVIM A IVFQAKINTL Site 192
M_grisea_11 GIIAVYALVV A VLIAQDLNAP Site 192
A_niger_3 GIIGIYGLVV S VLIANDLGQ- Site 192
C_glabrata_3 GIIAIYGLVV S VLISSSLTQ- Site 192
A_terreus_11 GIIAVYGLVI A VLIAGDMQPP Site 192
A_terreus_16 EVVAIYGVII A IVYSSKLNLI Site 192
C_parvum_16 EATAIYGVIA T FLLMSKIRSL Site 192
T_adhaerens_3 GIIAIYGLVV A VLIANRIKPT Site 192
T_castaneum_3 GIIAIYGLVI A VLIAGGIDSA Site 192
X_tropicalis_3 GIIAIYGLVV A VLIANSLTS- Site 192
G_zeae_3 GIIGIYGLVV S VLISDGLKQ- Site 192
L_elongisporus_3 GIIAIYGLVV S VLVSDSLAQ- Site 192
A_fumigatus_3 GIIGIYGLVV S VLIANDLGQ- Site 192
M_grisea_3 GIIGIYGLVV S VLISDNLKQ- Site 192
S_pombe_3 GIIAIYGLVV S VLISGNLKQ- Site 192
C_albicans_3 GILSVYGLVV S VLIAGGLSPQ Site 192
B_bovis_16 EAVGIYGLIV A VLLLNASLGF Site 192
C_muris_3 GILGIYGLIG A LVIFFVMGEP Site 192
S_purpuratus_3 GIVGIYGLVV A AVIANGIPSD Site 192
C_immitis_16 EVVAIYGVIM S IVFSSKVFYV Site 192
M_mulatta_16 EAVAIYGIIM A IVISNMAEPF Site 192
Y_lipolytica_3 GILAIYGLVV S VLISGSLQQ- Site 192
Species Residue at Site 235
in 'msaprobs'
muscle

The residue for every species at site 235 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

B_fuckeliana_16 EVVAIYGVIM S IVFSSKLGLM Site 192
C_immitis_11 GIIAVYGLVV A VLIAGDIGTP Site 192
A_mellifera_16 EAVAIYGLIT A IVLSGMLEKF Site 192
A_gossypii_11 GILAVYGLVV A VLVAGGLSPT Site 192
T_annulata_16 EAIGIYGLIV S VLLMNIASRF Site 192
N_vectensis_3 GIIAIYGLVV A VLIGSSISK- Site 192
S_Salar_16 EAVAIYGIIM A IVISNMAESF Site 192
L_elongisporus_16 EVVAIYGLIM A IVFSSKLTSV Site 192
C_neoformans_16 EVVAIYGVIM A IVFSSKINGD Site 192
C_neoformans_11 GIIAVYGLVV S VLIAGNISPS Site 192
P_knowlesi_16 EALGMYGVIT A VFLQIKFSGL Site 192
A_terreus_3 GIIGIYGLVV S VLIANNLGQ- Site 192
A_pisum_3 GIIAIYGLVV A VLIAGALEEP Site 192
S_Salar_3 GIIAIYGLVV A VLIANNISE- Site 192
P_marneffei_3 GIIAIYGLVV S VLIANDLNQ- Site 192
P_stipitis_3 GIIAIYGLVV S VLVSDGLKQ- Site 192
A_fumigatus_11 GIIAVYGLVI A VLIAGDMAPP Site 192
A_gossypii_3 GIIAIYGLVV S VLVCYSLGQ- Site 192
C_hominis_3 GILGVYGLIV G VIICSQIRT- Site 192
C_muris_16 EATAIYGVIA T FLLAARVRSL Site 192
X_laevis_16 EAVAIYGIIM A IVISNMAEQF Site 192
M_mulatta_3 GIIAIYGLVV A VLIASSLND- Site 192
M_brevicollis_16 EAVAIYGIIM A IVFTNAFKEF Site 192
K_lactis_3 GIIAIYGLVV S VLVCYSLGQ- Site 192
T_castaneum_16 EAVAIYGLIT A IVLSGYLEKF Site 192
Species Residue at Site 235
in 'msaprobs'
muscle

The residue for every species at site 235 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

C_intestinalis_16 EAVAIYGIII S IVMSNYLKYF Site 192
E_caballus_3 GIIAIYGLVV A VLIANSLND- Site 192
C_globosum_3 GIIGIYGLVV S VLISDGLAQ- Site 192
A_clavatus_3 GIIGIYGLVV S VLIANDLAQ- Site 192
N_crassa_11 GIIAVYALVV A VLIAQDLGPP Site 192
N_crassa_16 EVVAIYGVIM A IVFSAKLQPV Site 192
X_tropicalis_16 EAVAIYGIIM A IVISNMAEQF Site 192
P_anserina_11 GIIAVYALVI S VLIAQDLAPP Site 192
P_vivax_16 EALGMYGVIT A VFLQIKFSGL Site 192
P_anserina_16 EVVAIYGVIM A IVFSAKLAPV Site 192
H_sapiens_16 EAVAIYGIIM A IVISNMAEPF Site 192
T_annulata_3 GVLGIYGLII S IVITGNYGEP Site 192
C_intestinalis_3 GIVAIYGVVI A VLISQKMKA- Site 192
L_elongisporus_11 GILSVYGLVV A VLIAGGLSPT Site 192
A_gossypii_16 EVVAIYGLIM A IVFSSKLTVA Site 192
A_pisum_16 EAVAIYGLIT A IVMSGQLESF Site 192
N_crassa_3 GIIGIYGLVV S VLISDALTQ- Site 192
V_polyspora_3 GIIAIYGLVV S VLISSSLTQ- Site 192
S_cerevisiae_3 GIIAIYGLVV S VLVCYSLGQ- Site 192
P_marneffei_16 EVVAIYGVIM A IVFSSKLNFV Site 192
D_hansenii_3 GIIAIYGLVV S VLVTDSLKQ- Site 192
S_pombe_11 GIIGVYGLVM S VLIAGDMSPD Site 192
T_guttata_3 GIIAIYGLVV A VLIANALSP- Site 192
S_pombe_16 EVVAIYSLII A IVFSAKINDI Site 192
B_fuckeliana_3 GIIGIYGLVV S VLISDGLKQ- Site 192
Species Residue at Site 235
in 'msaprobs'
muscle

The residue for every species at site 235 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

T_adhaerens_16 EAVAIYGIIM A IVLSNNIAPY Site 192
S_cerevisiae_16 EVVAIYGLII A IVFSSKLTVA Site 192
R_norvegicus_3 GIIAIYGLVV A VLIANSLTD- Site 192
S_cerevisiae_11 GILAIYGLVV A VLIAGNLSPT Site 192
B_taurus_3 GIIAIYGLVV A VLIANSLND- Site 192
C_familiaris_3 GIIAIYGLVV A VLIANSLND- Site 192
P_anserina_3 GIIGIYGLVV S VLISDALTQ- Site 192
P_marneffei_11 GIIAVYGLVV A VLIANAMNPP Site 192
P_knowlesi_3 GVLGIYGIIM S ILIYGKMSPA Site 192
T_guttata_16 EAVAIYGIIM A IVISNMAEPF Site 192
B_fuckeliana_11 GIIAVYSLVI A VLIAGDMGPP Site 192
C_cinerea_okayama_3 GIIAIYGLVV S VLIANNLSI- Site 192
P_falciparum_16 EALGMYGVIT A VFLQIKFSGL Site 192
N_vectensis_16 EAVAIYGIIM S IVLSNSVTVS Site 192
A_niger_11 GIIAVYGLVI S VLIAGDMDPP Site 192
A_niger_16 EVVAIYGVIM A IVFSSKLNLV Site 192
C_parvum_3 GILGIYGLIG S LVIFFQMGEP Site 192
S_purpuratus_16 EAVAIYGIIM A IVLSGLVKDF Site 192
B_floridae_3 GIIAIYGLVV A VLIGSNMDNT Site 192
Y_lipolytica_16 EVVAIYGLIM A IVFSAKLASV Site 192
A_mellifera_3 GIIAIYGLVV A VLIAGGLEEP Site 192
A_clavatus_16 EVVAIYGVIM A IVFSSKLNLV Site 192
A_clavatus_11 GIIAVYGLVI A VLIAGDMAPP Site 192
S_sclerotiorum_3 GIIGIYGLVV S VLISDGLKQ- Site 192
P_falciparum_3 GVLGIYGIIM S ILIYGKMTPA Site 192
Species Residue at Site 235
in 'msaprobs'
muscle

The residue for every species at site 235 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

D_discoideum_16 EAVAIYGIIL A IILNGKIDKF Site 192
C_cinerea_okayama_11 GIIAVYGLVV S VLISGSISN- Site 192
D_hansenii_16 EVVAIYGLIM A IVFSSKLTNV Site 192
D_hansenii_11 GILSVYGLVV S VLIAGGLSPT Site 192
C_cinerea_okayama_16 EVVAIYGVII G IVYSAKLTNV Site 192
P_vivax_3 GVLGIYGIIM S ILIYGKMTPA Site 192
C_immitis_3 GIIGIYGLVV S VLIANDLGQ- Site 192
G_zeae_11 GIIAVYSLVI S VLIAEDLDPS Site 192
C_neoformans_3 GIIGIYGLVV S VLISGNLAS- Site 192
H_sapiens_3 GIIAIYGLVV A VLIANSLND- Site 192
G_zeae_16 EVVAIYGVIM A IVFSQKVENV Site 192
Y_lipolytica_11 GILSVYGLVV S VLIAGSLSPT Site 192
M_brevicollis_3 GIIAIYGLVV S VLIANNIGT- Site 192
D_discoideum_3 GVIAIYGLII C VILVGGIKPN Site 192
P_stipitis_16 EVVAIYGLIM A IVFSSKLTSV Site 192
C_albicans_16 EVVAIYGLIM A IVFSAKLTSV Site 192
C_albicans_11 GILSVYGLVV S VLIAGGLSPQ Site 192
P_stipitis_11 GILSVYGLVV A VLIAGGLAPT Site 192
X_laevis_3 GIIAIYGLVV A VLIANSLTQ- Site 192
C_glabrata_11 GILAIYGLVV A VLIAGNLSPT Site 192
E_caballus_16 EAVAIYGIIM A IVISNMAEPF Site 192
C_glabrata_16 EVVAIYGLIM A IVFSSKLTVS Site 192
V_polyspora_11 GILAIYGLVV A VLIAGSLNPA Site 192
V_polyspora_16 EVVAIYGLII A IIFSSKASFA Site 192
C_hominis_16 EATAIYGVIA T FLLMSKIRSL Site 192
Species Residue at Site 235
in 'msaprobs'
muscle

The residue for every species at site 235 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

C_globosum_11 GILAVYSLVI S VLIAQDLQPP Site 192
C_globosum_16 EVVAIYGVIM A IVFSAKINPV Site 192
O_mordax_16 EAVAIYGIIM A IVISNMAENF Site 192
D_rerio_16 EAVAIYGIIM A IVISNLAENF Site 192
B_bovis_3 GVLGIYGLIM A VIIVLNMGHP Site 192
B_floridae_16 EAVAIYGIIM A IVMLQIIEPY Site 192
M_musculus_3 GIIAIYGLVV A VLIANSLTD- Site 192
A_fumigatus_16 EVVAIYGVIM A IVFSSKLNLV Site 192
C_familiaris_16 EAVAIYGIIM A IVISNMAEPF Site 192
K_lactis_11 GILAVYGLVV A VLIAGGLSPT Site 192
K_lactis_16 EVVAIYGLIM A IVFSSKVTVA Site 192
B_taurus_16 EAVAIYGIIM A IVISNMAEPF Site 192
S_sclerotiorum_16 EVVAIYGVIM S IVFSSKLGLM Site 192
S_sclerotiorum_11 GIIAVYSLVI A VLIAGDIGPP Site 192
R_norvegicus_16 EAVAIYGIIM A IVISNMAEPF Site 192

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