V-ATPase Ancestral Library

If you use these results in your work, please cite: Hanson-Smith and Johnson, PLoS Comp. Bio., 2016


Overview | Alignments | Sites | Trees | Ancestors | Mutations


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Select a Site:

Site 234 in Alignment 'msaprobs'


Similarity to Other Alignments

What percentage of the residues at this site are inferred to be a single site (i.e. homologous) in the alignments produced by other methods? A value of 100% indicates that the existence of site 234 is robust across multiple methods. Values less than 100% indicate that other alignment methods made different homology inferences.

Similarity of Site 234 in 'msaprobs'
to Sites in 'muscle'

What percentage of the residues at this site in msaprobs are inferred to be a single site (i.e. homologous) in the alignments produced by muscle? A value of 100% indicates that the existence of site 234 is reproduced using the muscle method. Values less than 100% indicate that muscle made different homology inferences for the residues at this site.


Species Residue at Site 234
in 'msaprobs'
muscle

The residue for every species at site 234 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

M_musculus_16 CEAVAIYGII M AIVISNMAEP Site 191
O_mordax_3 AGIIAIYGLV V AVLIANNISE Site 191
D_rerio_3 AGIIAIYGLV V AVLIANNIGD Site 191
M_grisea_16 CEVVAIYGVI M AIVFQAKINT Site 191
M_grisea_11 SGIIAVYALV V AVLIAQDLNA Site 191
A_niger_3 AGIIGIYGLV V SVLIANDLGQ Site 191
C_glabrata_3 AGIIAIYGLV V SVLISSSLTQ Site 191
A_terreus_11 SGIIAVYGLV I AVLIAGDMQP Site 191
A_terreus_16 CEVVAIYGVI I AIVYSSKLNL Site 191
C_parvum_16 CEATAIYGVI A TFLLMSKIRS Site 191
T_adhaerens_3 AGIIAIYGLV V AVLIANRIKP Site 191
T_castaneum_3 AGIIAIYGLV I AVLIAGGIDS Site 191
X_tropicalis_3 AGIIAIYGLV V AVLIANSLTS Site 191
G_zeae_3 AGIIGIYGLV V SVLISDGLKQ Site 191
L_elongisporus_3 AGIIAIYGLV V SVLVSDSLAQ Site 191
A_fumigatus_3 AGIIGIYGLV V SVLIANDLGQ Site 191
M_grisea_3 AGIIGIYGLV V SVLISDNLKQ Site 191
S_pombe_3 AGIIAIYGLV V SVLISGNLKQ Site 191
C_albicans_3 SGILSVYGLV V SVLIAGGLSP Site 191
B_bovis_16 CEAVGIYGLI V AVLLLNASLG Site 191
C_muris_3 AGILGIYGLI G ALVIFFVMGE Site 191
S_purpuratus_3 AGIVGIYGLV V AAVIANGIPS Site 191
C_immitis_16 CEVVAIYGVI M SIVFSSKVFY Site 191
M_mulatta_16 CEAVAIYGII M AIVISNMAEP Site 191
Y_lipolytica_3 AGILAIYGLV V SVLISGSLQQ Site 191
Species Residue at Site 234
in 'msaprobs'
muscle

The residue for every species at site 234 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

B_fuckeliana_16 CEVVAIYGVI M SIVFSSKLGL Site 191
C_immitis_11 AGIIAVYGLV V AVLIAGDIGT Site 191
A_mellifera_16 CEAVAIYGLI T AIVLSGMLEK Site 191
A_gossypii_11 SGILAVYGLV V AVLVAGGLSP Site 191
T_annulata_16 CEAIGIYGLI V SVLLMNIASR Site 191
N_vectensis_3 AGIIAIYGLV V AVLIGSSISK Site 191
S_Salar_16 CEAVAIYGII M AIVISNMAES Site 191
L_elongisporus_16 CEVVAIYGLI M AIVFSSKLTS Site 191
C_neoformans_16 CEVVAIYGVI M AIVFSSKING Site 191
C_neoformans_11 SGIIAVYGLV V SVLIAGNISP Site 191
P_knowlesi_16 CEALGMYGVI T AVFLQIKFSG Site 191
A_terreus_3 AGIIGIYGLV V SVLIANNLGQ Site 191
A_pisum_3 AGIIAIYGLV V AVLIAGALEE Site 191
S_Salar_3 AGIIAIYGLV V AVLIANNISE Site 191
P_marneffei_3 AGIIAIYGLV V SVLIANDLNQ Site 191
P_stipitis_3 AGIIAIYGLV V SVLVSDGLKQ Site 191
A_fumigatus_11 SGIIAVYGLV I AVLIAGDMAP Site 191
A_gossypii_3 AGIIAIYGLV V SVLVCYSLGQ Site 191
C_hominis_3 AGILGVYGLI V GVIICSQIRT Site 191
C_muris_16 CEATAIYGVI A TFLLAARVRS Site 191
X_laevis_16 CEAVAIYGII M AIVISNMAEQ Site 191
M_mulatta_3 AGIIAIYGLV V AVLIASSLND Site 191
M_brevicollis_16 CEAVAIYGII M AIVFTNAFKE Site 191
K_lactis_3 AGIIAIYGLV V SVLVCYSLGQ Site 191
T_castaneum_16 CEAVAIYGLI T AIVLSGYLEK Site 191
Species Residue at Site 234
in 'msaprobs'
muscle

The residue for every species at site 234 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

C_intestinalis_16 CEAVAIYGII I SIVMSNYLKY Site 191
E_caballus_3 AGIIAIYGLV V AVLIANSLND Site 191
C_globosum_3 AGIIGIYGLV V SVLISDGLAQ Site 191
A_clavatus_3 AGIIGIYGLV V SVLIANDLAQ Site 191
N_crassa_11 SGIIAVYALV V AVLIAQDLGP Site 191
N_crassa_16 CEVVAIYGVI M AIVFSAKLQP Site 191
X_tropicalis_16 CEAVAIYGII M AIVISNMAEQ Site 191
P_anserina_11 SGIIAVYALV I SVLIAQDLAP Site 191
P_vivax_16 CEALGMYGVI T AVFLQIKFSG Site 191
P_anserina_16 CEVVAIYGVI M AIVFSAKLAP Site 191
H_sapiens_16 CEAVAIYGII M AIVISNMAEP Site 191
T_annulata_3 AGVLGIYGLI I SIVITGNYGE Site 191
C_intestinalis_3 AGIVAIYGVV I AVLISQKMKA Site 191
L_elongisporus_11 SGILSVYGLV V AVLIAGGLSP Site 191
A_gossypii_16 CEVVAIYGLI M AIVFSSKLTV Site 191
A_pisum_16 CEAVAIYGLI T AIVMSGQLES Site 191
N_crassa_3 AGIIGIYGLV V SVLISDALTQ Site 191
V_polyspora_3 AGIIAIYGLV V SVLISSSLTQ Site 191
S_cerevisiae_3 AGIIAIYGLV V SVLVCYSLGQ Site 191
P_marneffei_16 CEVVAIYGVI M AIVFSSKLNF Site 191
D_hansenii_3 AGIIAIYGLV V SVLVTDSLKQ Site 191
S_pombe_11 SGIIGVYGLV M SVLIAGDMSP Site 191
T_guttata_3 AGIIAIYGLV V AVLIANALSP Site 191
S_pombe_16 CEVVAIYSLI I AIVFSAKIND Site 191
B_fuckeliana_3 AGIIGIYGLV V SVLISDGLKQ Site 191
Species Residue at Site 234
in 'msaprobs'
muscle

The residue for every species at site 234 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

T_adhaerens_16 CEAVAIYGII M AIVLSNNIAP Site 191
S_cerevisiae_16 CEVVAIYGLI I AIVFSSKLTV Site 191
R_norvegicus_3 AGIIAIYGLV V AVLIANSLTD Site 191
S_cerevisiae_11 SGILAIYGLV V AVLIAGNLSP Site 191
B_taurus_3 AGIIAIYGLV V AVLIANSLND Site 191
C_familiaris_3 AGIIAIYGLV V AVLIANSLND Site 191
P_anserina_3 AGIIGIYGLV V SVLISDALTQ Site 191
P_marneffei_11 SGIIAVYGLV V AVLIANAMNP Site 191
P_knowlesi_3 AGVLGIYGII M SILIYGKMSP Site 191
T_guttata_16 CEAVAIYGII M AIVISNMAEP Site 191
B_fuckeliana_11 SGIIAVYSLV I AVLIAGDMGP Site 191
C_cinerea_okayama_3 AGIIAIYGLV V SVLIANNLSI Site 191
P_falciparum_16 CEALGMYGVI T AVFLQIKFSG Site 191
N_vectensis_16 CEAVAIYGII M SIVLSNSVTV Site 191
A_niger_11 SGIIAVYGLV I SVLIAGDMDP Site 191
A_niger_16 CEVVAIYGVI M AIVFSSKLNL Site 191
C_parvum_3 AGILGIYGLI G SLVIFFQMGE Site 191
S_purpuratus_16 CEAVAIYGII M AIVLSGLVKD Site 191
B_floridae_3 AGIIAIYGLV V AVLIGSNMDN Site 191
Y_lipolytica_16 CEVVAIYGLI M AIVFSAKLAS Site 191
A_mellifera_3 AGIIAIYGLV V AVLIAGGLEE Site 191
A_clavatus_16 CEVVAIYGVI M AIVFSSKLNL Site 191
A_clavatus_11 SGIIAVYGLV I AVLIAGDMAP Site 191
S_sclerotiorum_3 AGIIGIYGLV V SVLISDGLKQ Site 191
P_falciparum_3 AGVLGIYGII M SILIYGKMTP Site 191
Species Residue at Site 234
in 'msaprobs'
muscle

The residue for every species at site 234 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

D_discoideum_16 CEAVAIYGII L AIILNGKIDK Site 191
C_cinerea_okayama_11 SGIIAVYGLV V SVLISGSISN Site 191
D_hansenii_16 CEVVAIYGLI M AIVFSSKLTN Site 191
D_hansenii_11 SGILSVYGLV V SVLIAGGLSP Site 191
C_cinerea_okayama_16 CEVVAIYGVI I GIVYSAKLTN Site 191
P_vivax_3 AGVLGIYGII M SILIYGKMTP Site 191
C_immitis_3 AGIIGIYGLV V SVLIANDLGQ Site 191
G_zeae_11 SGIIAVYSLV I SVLIAEDLDP Site 191
C_neoformans_3 AGIIGIYGLV V SVLISGNLAS Site 191
H_sapiens_3 AGIIAIYGLV V AVLIANSLND Site 191
G_zeae_16 CEVVAIYGVI M AIVFSQKVEN Site 191
Y_lipolytica_11 SGILSVYGLV V SVLIAGSLSP Site 191
M_brevicollis_3 AGIIAIYGLV V SVLIANNIGT Site 191
D_discoideum_3 AGVIAIYGLI I CVILVGGIKP Site 191
P_stipitis_16 CEVVAIYGLI M AIVFSSKLTS Site 191
C_albicans_16 CEVVAIYGLI M AIVFSAKLTS Site 191
C_albicans_11 SGILSVYGLV V SVLIAGGLSP Site 191
P_stipitis_11 SGILSVYGLV V AVLIAGGLAP Site 191
X_laevis_3 AGIIAIYGLV V AVLIANSLTQ Site 191
C_glabrata_11 SGILAIYGLV V AVLIAGNLSP Site 191
E_caballus_16 CEAVAIYGII M AIVISNMAEP Site 191
C_glabrata_16 CEVVAIYGLI M AIVFSSKLTV Site 191
V_polyspora_11 SGILAIYGLV V AVLIAGSLNP Site 191
V_polyspora_16 CEVVAIYGLI I AIIFSSKASF Site 191
C_hominis_16 CEATAIYGVI A TFLLMSKIRS Site 191
Species Residue at Site 234
in 'msaprobs'
muscle

The residue for every species at site 234 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

C_globosum_11 SGILAVYSLV I SVLIAQDLQP Site 191
C_globosum_16 CEVVAIYGVI M AIVFSAKINP Site 191
O_mordax_16 CEAVAIYGII M AIVISNMAEN Site 191
D_rerio_16 CEAVAIYGII M AIVISNLAEN Site 191
B_bovis_3 AGVLGIYGLI M AVIIVLNMGH Site 191
B_floridae_16 CEAVAIYGII M AIVMLQIIEP Site 191
M_musculus_3 AGIIAIYGLV V AVLIANSLTD Site 191
A_fumigatus_16 CEVVAIYGVI M AIVFSSKLNL Site 191
C_familiaris_16 CEAVAIYGII M AIVISNMAEP Site 191
K_lactis_11 SGILAVYGLV V AVLIAGGLSP Site 191
K_lactis_16 CEVVAIYGLI M AIVFSSKVTV Site 191
B_taurus_16 CEAVAIYGII M AIVISNMAEP Site 191
S_sclerotiorum_16 CEVVAIYGVI M SIVFSSKLGL Site 191
S_sclerotiorum_11 SGIIAVYSLV I AVLIAGDIGP Site 191
R_norvegicus_16 CEAVAIYGII M AIVISNMAEP Site 191

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