V-ATPase Ancestral Library

If you use these results in your work, please cite: Hanson-Smith and Johnson, PLoS Comp. Bio., 2016


Overview | Alignments | Sites | Trees | Ancestors | Mutations


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Select a Site:

Site 232 in Alignment 'msaprobs'


Similarity to Other Alignments

What percentage of the residues at this site are inferred to be a single site (i.e. homologous) in the alignments produced by other methods? A value of 100% indicates that the existence of site 232 is robust across multiple methods. Values less than 100% indicate that other alignment methods made different homology inferences.

Similarity of Site 232 in 'msaprobs'
to Sites in 'muscle'

What percentage of the residues at this site in msaprobs are inferred to be a single site (i.e. homologous) in the alignments produced by muscle? A value of 100% indicates that the existence of site 232 is reproduced using the muscle method. Values less than 100% indicate that muscle made different homology inferences for the residues at this site.


Species Residue at Site 232
in 'msaprobs'
muscle

The residue for every species at site 232 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

M_musculus_16 IFCEAVAIYG I IMAIVISNMA Site 189
O_mordax_3 VMAGIIAIYG L VVAVLIANNI Site 189
D_rerio_3 VMAGIIAIYG L VVAVLIANNI Site 189
M_grisea_16 IFCEVVAIYG V IMAIVFQAKI Site 189
M_grisea_11 IMSGIIAVYA L VVAVLIAQDL Site 189
A_niger_3 VMAGIIGIYG L VVSVLIANDL Site 189
C_glabrata_3 VMAGIIAIYG L VVSVLISSSL Site 189
A_terreus_11 VMSGIIAVYG L VIAVLIAGDM Site 189
A_terreus_16 IFCEVVAIYG V IIAIVYSSKL Site 189
C_parvum_16 IFCEATAIYG V IATFLLMSKI Site 189
T_adhaerens_3 VMAGIIAIYG L VVAVLIANRI Site 189
T_castaneum_3 VMAGIIAIYG L VIAVLIAGGI Site 189
X_tropicalis_3 VMAGIIAIYG L VVAVLIANSL Site 189
G_zeae_3 IMAGIIGIYG L VVSVLISDGL Site 189
L_elongisporus_3 VMAGIIAIYG L VVSVLVSDSL Site 189
A_fumigatus_3 VMAGIIGIYG L VVSVLIANDL Site 189
M_grisea_3 IMAGIIGIYG L VVSVLISDNL Site 189
S_pombe_3 VMAGIIAIYG L VVSVLISGNL Site 189
C_albicans_3 VMSGILSVYG L VVSVLIAGGL Site 189
B_bovis_16 IFCEAVGIYG L IVAVLLLNAS Site 189
C_muris_3 VMAGILGIYG L IGALVIFFVM Site 189
S_purpuratus_3 VMAGIVGIYG L VVAAVIANGI Site 189
C_immitis_16 IFCEVVAIYG V IMSIVFSSKV Site 189
M_mulatta_16 IFCEAVAIYG I IMAIVISNMA Site 189
Y_lipolytica_3 IMAGILAIYG L VVSVLISGSL Site 189
Species Residue at Site 232
in 'msaprobs'
muscle

The residue for every species at site 232 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

B_fuckeliana_16 IFCEVVAIYG V IMSIVFSSKL Site 189
C_immitis_11 VMAGIIAVYG L VVAVLIAGDI Site 189
A_mellifera_16 IFCEAVAIYG L ITAIVLSGML Site 189
A_gossypii_11 VMSGILAVYG L VVAVLVAGGL Site 189
T_annulata_16 IFCEAIGIYG L IVSVLLMNIA Site 189
N_vectensis_3 VMAGIIAIYG L VVAVLIGSSI Site 189
S_Salar_16 IFCEAVAIYG I IMAIVISNMA Site 189
L_elongisporus_16 IFCEVVAIYG L IMAIVFSSKL Site 189
C_neoformans_16 IFCEVVAIYG V IMAIVFSSKI Site 189
C_neoformans_11 VMSGIIAVYG L VVSVLIAGNI Site 189
P_knowlesi_16 IFCEALGMYG V ITAVFLQIKF Site 189
A_terreus_3 VMAGIIGIYG L VVSVLIANNL Site 189
A_pisum_3 VMAGIIAIYG L VVAVLIAGAL Site 189
S_Salar_3 VMAGIIAIYG L VVAVLIANNI Site 189
P_marneffei_3 VMAGIIAIYG L VVSVLIANDL Site 189
P_stipitis_3 VMAGIIAIYG L VVSVLVSDGL Site 189
A_fumigatus_11 VMSGIIAVYG L VIAVLIAGDM Site 189
A_gossypii_3 IMAGIIAIYG L VVSVLVCYSL Site 189
C_hominis_3 VMAGILGVYG L IVGVIICSQI Site 189
C_muris_16 IFCEATAIYG V IATFLLAARV Site 189
X_laevis_16 IFCEAVAIYG I IMAIVISNMA Site 189
M_mulatta_3 VMAGIIAIYG L VVAVLIASSL Site 189
M_brevicollis_16 IFCEAVAIYG I IMAIVFTNAF Site 189
K_lactis_3 IMAGIIAIYG L VVSVLVCYSL Site 189
T_castaneum_16 IFCEAVAIYG L ITAIVLSGYL Site 189
Species Residue at Site 232
in 'msaprobs'
muscle

The residue for every species at site 232 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

C_intestinalis_16 IFCEAVAIYG I IISIVMSNYL Site 189
E_caballus_3 VMAGIIAIYG L VVAVLIANSL Site 189
C_globosum_3 IMAGIIGIYG L VVSVLISDGL Site 189
A_clavatus_3 VMAGIIGIYG L VVSVLIANDL Site 189
N_crassa_11 VMSGIIAVYA L VVAVLIAQDL Site 189
N_crassa_16 IFCEVVAIYG V IMAIVFSAKL Site 189
X_tropicalis_16 IFCEAVAIYG I IMAIVISNMA Site 189
P_anserina_11 VMSGIIAVYA L VISVLIAQDL Site 189
P_vivax_16 IFCEALGMYG V ITAVFLQIKF Site 189
P_anserina_16 IFCEVVAIYG V IMAIVFSAKL Site 189
H_sapiens_16 IFCEAVAIYG I IMAIVISNMA Site 189
T_annulata_3 IMAGVLGIYG L IISIVITGNY Site 189
C_intestinalis_3 VMAGIVAIYG V VIAVLISQKM Site 189
L_elongisporus_11 VMSGILSVYG L VVAVLIAGGL Site 189
A_gossypii_16 IFCEVVAIYG L IMAIVFSSKL Site 189
A_pisum_16 IFCEAVAIYG L ITAIVMSGQL Site 189
N_crassa_3 IMAGIIGIYG L VVSVLISDAL Site 189
V_polyspora_3 VMAGIIAIYG L VVSVLISSSL Site 189
S_cerevisiae_3 IMAGIIAIYG L VVSVLVCYSL Site 189
P_marneffei_16 IFCEVVAIYG V IMAIVFSSKL Site 189
D_hansenii_3 IMAGIIAIYG L VVSVLVTDSL Site 189
S_pombe_11 VMSGIIGVYG L VMSVLIAGDM Site 189
T_guttata_3 VMAGIIAIYG L VVAVLIANAL Site 189
S_pombe_16 IFCEVVAIYS L IIAIVFSAKI Site 189
B_fuckeliana_3 IMAGIIGIYG L VVSVLISDGL Site 189
Species Residue at Site 232
in 'msaprobs'
muscle

The residue for every species at site 232 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

T_adhaerens_16 IFCEAVAIYG I IMAIVLSNNI Site 189
S_cerevisiae_16 IFCEVVAIYG L IIAIVFSSKL Site 189
R_norvegicus_3 VMAGIIAIYG L VVAVLIANSL Site 189
S_cerevisiae_11 VMSGILAIYG L VVAVLIAGNL Site 189
B_taurus_3 VMAGIIAIYG L VVAVLIANSL Site 189
C_familiaris_3 VMAGIIAIYG L VVAVLIANSL Site 189
P_anserina_3 IMAGIIGIYG L VVSVLISDAL Site 189
P_marneffei_11 VMSGIIAVYG L VVAVLIANAM Site 189
P_knowlesi_3 VMAGVLGIYG I IMSILIYGKM Site 189
T_guttata_16 IFCEAVAIYG I IMAIVISNMA Site 189
B_fuckeliana_11 VMSGIIAVYS L VIAVLIAGDM Site 189
C_cinerea_okayama_3 VMAGIIAIYG L VVSVLIANNL Site 189
P_falciparum_16 IFCEALGMYG V ITAVFLQIKF Site 189
N_vectensis_16 IFCEAVAIYG I IMSIVLSNSV Site 189
A_niger_11 VMSGIIAVYG L VISVLIAGDM Site 189
A_niger_16 IFCEVVAIYG V IMAIVFSSKL Site 189
C_parvum_3 VMAGILGIYG L IGSLVIFFQM Site 189
S_purpuratus_16 IFCEAVAIYG I IMAIVLSGLV Site 189
B_floridae_3 VMAGIIAIYG L VVAVLIGSNM Site 189
Y_lipolytica_16 IFCEVVAIYG L IMAIVFSAKL Site 189
A_mellifera_3 VMAGIIAIYG L VVAVLIAGGL Site 189
A_clavatus_16 IFCEVVAIYG V IMAIVFSSKL Site 189
A_clavatus_11 VMSGIIAVYG L VIAVLIAGDM Site 189
S_sclerotiorum_3 IMAGIIGIYG L VVSVLISDGL Site 189
P_falciparum_3 VMAGVLGIYG I IMSILIYGKM Site 189
Species Residue at Site 232
in 'msaprobs'
muscle

The residue for every species at site 232 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

D_discoideum_16 IFCEAVAIYG I ILAIILNGKI Site 189
C_cinerea_okayama_11 VMSGIIAVYG L VVSVLISGSI Site 189
D_hansenii_16 IFCEVVAIYG L IMAIVFSSKL Site 189
D_hansenii_11 VMSGILSVYG L VVSVLIAGGL Site 189
C_cinerea_okayama_16 IFCEVVAIYG V IIGIVYSAKL Site 189
P_vivax_3 VMAGVLGIYG I IMSILIYGKM Site 189
C_immitis_3 VMAGIIGIYG L VVSVLIANDL Site 189
G_zeae_11 VMSGIIAVYS L VISVLIAEDL Site 189
C_neoformans_3 VMAGIIGIYG L VVSVLISGNL Site 189
H_sapiens_3 VMAGIIAIYG L VVAVLIANSL Site 189
G_zeae_16 IFCEVVAIYG V IMAIVFSQKV Site 189
Y_lipolytica_11 VMSGILSVYG L VVSVLIAGSL Site 189
M_brevicollis_3 VMAGIIAIYG L VVSVLIANNI Site 189
D_discoideum_3 IFAGVIAIYG L IICVILVGGI Site 189
P_stipitis_16 IFCEVVAIYG L IMAIVFSSKL Site 189
C_albicans_16 IFCEVVAIYG L IMAIVFSAKL Site 189
C_albicans_11 VMSGILSVYG L VVSVLIAGGL Site 189
P_stipitis_11 VMSGILSVYG L VVAVLIAGGL Site 189
X_laevis_3 VMAGIIAIYG L VVAVLIANSL Site 189
C_glabrata_11 VMSGILAIYG L VVAVLIAGNL Site 189
E_caballus_16 IFCEAVAIYG I IMAIVISNMA Site 189
C_glabrata_16 IFCEVVAIYG L IMAIVFSSKL Site 189
V_polyspora_11 VMSGILAIYG L VVAVLIAGSL Site 189
V_polyspora_16 IFCEVVAIYG L IIAIIFSSKA Site 189
C_hominis_16 IFCEATAIYG V IATFLLMSKI Site 189
Species Residue at Site 232
in 'msaprobs'
muscle

The residue for every species at site 232 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

C_globosum_11 VMSGILAVYS L VISVLIAQDL Site 189
C_globosum_16 IFCEVVAIYG V IMAIVFSAKI Site 189
O_mordax_16 IFCEAVAIYG I IMAIVISNMA Site 189
D_rerio_16 IFCEAVAIYG I IMAIVISNLA Site 189
B_bovis_3 IMAGVLGIYG L IMAVIIVLNM Site 189
B_floridae_16 IFCEAVAIYG I IMAIVMLQII Site 189
M_musculus_3 VMAGIIAIYG L VVAVLIANSL Site 189
A_fumigatus_16 IFCEVVAIYG V IMAIVFSSKL Site 189
C_familiaris_16 IFCEAVAIYG I IMAIVISNMA Site 189
K_lactis_11 VMSGILAVYG L VVAVLIAGGL Site 189
K_lactis_16 IFCEVVAIYG L IMAIVFSSKV Site 189
B_taurus_16 IFCEAVAIYG I IMAIVISNMA Site 189
S_sclerotiorum_16 IFCEVVAIYG V IMSIVFSSKL Site 189
S_sclerotiorum_11 VMSGIIAVYS L VIAVLIAGDI Site 189
R_norvegicus_16 IFCEAVAIYG I IMAIVISNMA Site 189

Generated by PhyloBot at 15:37, October 30th 2020
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