V-ATPase Ancestral Library

If you use these results in your work, please cite: Hanson-Smith and Johnson, PLoS Comp. Bio., 2016


Overview | Alignments | Sites | Trees | Ancestors | Mutations


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Select a Site:

Site 231 in Alignment 'msaprobs'


Similarity to Other Alignments

What percentage of the residues at this site are inferred to be a single site (i.e. homologous) in the alignments produced by other methods? A value of 100% indicates that the existence of site 231 is robust across multiple methods. Values less than 100% indicate that other alignment methods made different homology inferences.

Similarity of Site 231 in 'msaprobs'
to Sites in 'muscle'

What percentage of the residues at this site in msaprobs are inferred to be a single site (i.e. homologous) in the alignments produced by muscle? A value of 100% indicates that the existence of site 231 is reproduced using the muscle method. Values less than 100% indicate that muscle made different homology inferences for the residues at this site.


Species Residue at Site 231
in 'msaprobs'
muscle

The residue for every species at site 231 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

M_musculus_16 IIFCEAVAIY G IIMAIVISNM Site 188
O_mordax_3 VVMAGIIAIY G LVVAVLIANN Site 188
D_rerio_3 VVMAGIIAIY G LVVAVLIANN Site 188
M_grisea_16 IIFCEVVAIY G VIMAIVFQAK Site 188
M_grisea_11 VIMSGIIAVY A LVVAVLIAQD Site 188
A_niger_3 IVMAGIIGIY G LVVSVLIAND Site 188
C_glabrata_3 IVMAGIIAIY G LVVSVLISSS Site 188
A_terreus_11 VVMSGIIAVY G LVIAVLIAGD Site 188
A_terreus_16 IIFCEVVAIY G VIIAIVYSSK Site 188
C_parvum_16 VIFCEATAIY G VIATFLLMSK Site 188
T_adhaerens_3 VVMAGIIAIY G LVVAVLIANR Site 188
T_castaneum_3 VVMAGIIAIY G LVIAVLIAGG Site 188
X_tropicalis_3 VVMAGIIAIY G LVVAVLIANS Site 188
G_zeae_3 VIMAGIIGIY G LVVSVLISDG Site 188
L_elongisporus_3 VVMAGIIAIY G LVVSVLVSDS Site 188
A_fumigatus_3 IVMAGIIGIY G LVVSVLIAND Site 188
M_grisea_3 VIMAGIIGIY G LVVSVLISDN Site 188
S_pombe_3 VVMAGIIAIY G LVVSVLISGN Site 188
C_albicans_3 VVMSGILSVY G LVVSVLIAGG Site 188
B_bovis_16 VIFCEAVGIY G LIVAVLLLNA Site 188
C_muris_3 AVMAGILGIY G LIGALVIFFV Site 188
S_purpuratus_3 VVMAGIVGIY G LVVAAVIANG Site 188
C_immitis_16 IIFCEVVAIY G VIMSIVFSSK Site 188
M_mulatta_16 IIFCEAVAIY G IIMAIVISNM Site 188
Y_lipolytica_3 VIMAGILAIY G LVVSVLISGS Site 188
Species Residue at Site 231
in 'msaprobs'
muscle

The residue for every species at site 231 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

B_fuckeliana_16 IIFCEVVAIY G VIMSIVFSSK Site 188
C_immitis_11 VVMAGIIAVY G LVVAVLIAGD Site 188
A_mellifera_16 VIFCEAVAIY G LITAIVLSGM Site 188
A_gossypii_11 VVMSGILAVY G LVVAVLVAGG Site 188
T_annulata_16 VIFCEAIGIY G LIVSVLLMNI Site 188
N_vectensis_3 VVMAGIIAIY G LVVAVLIGSS Site 188
S_Salar_16 IIFCEAVAIY G IIMAIVISNM Site 188
L_elongisporus_16 IIFCEVVAIY G LIMAIVFSSK Site 188
C_neoformans_16 IIFCEVVAIY G VIMAIVFSSK Site 188
C_neoformans_11 VVMSGIIAVY G LVVSVLIAGN Site 188
P_knowlesi_16 IIFCEALGMY G VITAVFLQIK Site 188
A_terreus_3 IVMAGIIGIY G LVVSVLIANN Site 188
A_pisum_3 VVMAGIIAIY G LVVAVLIAGA Site 188
S_Salar_3 VVMAGIIAIY G LVVAVLIANN Site 188
P_marneffei_3 IVMAGIIAIY G LVVSVLIAND Site 188
P_stipitis_3 VVMAGIIAIY G LVVSVLVSDG Site 188
A_fumigatus_11 VVMSGIIAVY G LVIAVLIAGD Site 188
A_gossypii_3 VIMAGIIAIY G LVVSVLVCYS Site 188
C_hominis_3 AVMAGILGVY G LIVGVIICSQ Site 188
C_muris_16 IIFCEATAIY G VIATFLLAAR Site 188
X_laevis_16 IIFCEAVAIY G IIMAIVISNM Site 188
M_mulatta_3 VVMAGIIAIY G LVVAVLIASS Site 188
M_brevicollis_16 IIFCEAVAIY G IIMAIVFTNA Site 188
K_lactis_3 VIMAGIIAIY G LVVSVLVCYS Site 188
T_castaneum_16 VIFCEAVAIY G LITAIVLSGY Site 188
Species Residue at Site 231
in 'msaprobs'
muscle

The residue for every species at site 231 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

C_intestinalis_16 IIFCEAVAIY G IIISIVMSNY Site 188
E_caballus_3 VVMAGIIAIY G LVVAVLIANS Site 188
C_globosum_3 VIMAGIIGIY G LVVSVLISDG Site 188
A_clavatus_3 IVMAGIIGIY G LVVSVLIAND Site 188
N_crassa_11 VVMSGIIAVY A LVVAVLIAQD Site 188
N_crassa_16 IIFCEVVAIY G VIMAIVFSAK Site 188
X_tropicalis_16 IIFCEAVAIY G IIMAIVISNM Site 188
P_anserina_11 VVMSGIIAVY A LVISVLIAQD Site 188
P_vivax_16 IIFCEALGMY G VITAVFLQIK Site 188
P_anserina_16 IIFCEVVAIY G VIMAIVFSAK Site 188
H_sapiens_16 IIFCEAVAIY G IIMAIVISNM Site 188
T_annulata_3 VIMAGVLGIY G LIISIVITGN Site 188
C_intestinalis_3 VVMAGIVAIY G VVIAVLISQK Site 188
L_elongisporus_11 VVMSGILSVY G LVVAVLIAGG Site 188
A_gossypii_16 IIFCEVVAIY G LIMAIVFSSK Site 188
A_pisum_16 VIFCEAVAIY G LITAIVMSGQ Site 188
N_crassa_3 VIMAGIIGIY G LVVSVLISDA Site 188
V_polyspora_3 VVMAGIIAIY G LVVSVLISSS Site 188
S_cerevisiae_3 VIMAGIIAIY G LVVSVLVCYS Site 188
P_marneffei_16 IIFCEVVAIY G VIMAIVFSSK Site 188
D_hansenii_3 VIMAGIIAIY G LVVSVLVTDS Site 188
S_pombe_11 VVMSGIIGVY G LVMSVLIAGD Site 188
T_guttata_3 VVMAGIIAIY G LVVAVLIANA Site 188
S_pombe_16 IIFCEVVAIY S LIIAIVFSAK Site 188
B_fuckeliana_3 VIMAGIIGIY G LVVSVLISDG Site 188
Species Residue at Site 231
in 'msaprobs'
muscle

The residue for every species at site 231 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

T_adhaerens_16 IIFCEAVAIY G IIMAIVLSNN Site 188
S_cerevisiae_16 IIFCEVVAIY G LIIAIVFSSK Site 188
R_norvegicus_3 VVMAGIIAIY G LVVAVLIANS Site 188
S_cerevisiae_11 VVMSGILAIY G LVVAVLIAGN Site 188
B_taurus_3 VVMAGIIAIY G LVVAVLIANS Site 188
C_familiaris_3 VVMAGIIAIY G LVVAVLIANS Site 188
P_anserina_3 VIMAGIIGIY G LVVSVLISDA Site 188
P_marneffei_11 VVMSGIIAVY G LVVAVLIANA Site 188
P_knowlesi_3 VVMAGVLGIY G IIMSILIYGK Site 188
T_guttata_16 IIFCEAVAIY G IIMAIVISNM Site 188
B_fuckeliana_11 VVMSGIIAVY S LVIAVLIAGD Site 188
C_cinerea_okayama_3 VVMAGIIAIY G LVVSVLIANN Site 188
P_falciparum_16 IIFCEALGMY G VITAVFLQIK Site 188
N_vectensis_16 IIFCEAVAIY G IIMSIVLSNS Site 188
A_niger_11 VVMSGIIAVY G LVISVLIAGD Site 188
A_niger_16 IIFCEVVAIY G VIMAIVFSSK Site 188
C_parvum_3 AVMAGILGIY G LIGSLVIFFQ Site 188
S_purpuratus_16 IIFCEAVAIY G IIMAIVLSGL Site 188
B_floridae_3 VVMAGIIAIY G LVVAVLIGSN Site 188
Y_lipolytica_16 IIFCEVVAIY G LIMAIVFSAK Site 188
A_mellifera_3 VVMAGIIAIY G LVVAVLIAGG Site 188
A_clavatus_16 IIFCEVVAIY G VIMAIVFSSK Site 188
A_clavatus_11 VVMSGIIAVY G LVIAVLIAGD Site 188
S_sclerotiorum_3 VIMAGIIGIY G LVVSVLISDG Site 188
P_falciparum_3 VVMAGVLGIY G IIMSILIYGK Site 188
Species Residue at Site 231
in 'msaprobs'
muscle

The residue for every species at site 231 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

D_discoideum_16 IIFCEAVAIY G IILAIILNGK Site 188
C_cinerea_okayama_11 VVMSGIIAVY G LVVSVLISGS Site 188
D_hansenii_16 IIFCEVVAIY G LIMAIVFSSK Site 188
D_hansenii_11 VVMSGILSVY G LVVSVLIAGG Site 188
C_cinerea_okayama_16 IIFCEVVAIY G VIIGIVYSAK Site 188
P_vivax_3 VVMAGVLGIY G IIMSILIYGK Site 188
C_immitis_3 IVMAGIIGIY G LVVSVLIAND Site 188
G_zeae_11 VVMSGIIAVY S LVISVLIAED Site 188
C_neoformans_3 VVMAGIIGIY G LVVSVLISGN Site 188
H_sapiens_3 VVMAGIIAIY G LVVAVLIANS Site 188
G_zeae_16 IIFCEVVAIY G VIMAIVFSQK Site 188
Y_lipolytica_11 VVMSGILSVY G LVVSVLIAGS Site 188
M_brevicollis_3 VVMAGIIAIY G LVVSVLIANN Site 188
D_discoideum_3 VIFAGVIAIY G LIICVILVGG Site 188
P_stipitis_16 IIFCEVVAIY G LIMAIVFSSK Site 188
C_albicans_16 IIFCEVVAIY G LIMAIVFSAK Site 188
C_albicans_11 VVMSGILSVY G LVVSVLIAGG Site 188
P_stipitis_11 VVMSGILSVY G LVVAVLIAGG Site 188
X_laevis_3 VVMAGIIAIY G LVVAVLIANS Site 188
C_glabrata_11 VVMSGILAIY G LVVAVLIAGN Site 188
E_caballus_16 IIFCEAVAIY G IIMAIVISNM Site 188
C_glabrata_16 IIFCEVVAIY G LIMAIVFSSK Site 188
V_polyspora_11 VVMSGILAIY G LVVAVLIAGS Site 188
V_polyspora_16 IIFCEVVAIY G LIIAIIFSSK Site 188
C_hominis_16 VIFCEATAIY G VIATFLLMSK Site 188
Species Residue at Site 231
in 'msaprobs'
muscle

The residue for every species at site 231 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

C_globosum_11 VVMSGILAVY S LVISVLIAQD Site 188
C_globosum_16 IIFCEVVAIY G VIMAIVFSAK Site 188
O_mordax_16 IIFCEAVAIY G IIMAIVISNM Site 188
D_rerio_16 IIFCEAVAIY G IIMAIVISNL Site 188
B_bovis_3 VIMAGVLGIY G LIMAVIIVLN Site 188
B_floridae_16 IIFCEAVAIY G IIMAIVMLQI Site 188
M_musculus_3 VVMAGIIAIY G LVVAVLIANS Site 188
A_fumigatus_16 IIFCEVVAIY G VIMAIVFSSK Site 188
C_familiaris_16 IIFCEAVAIY G IIMAIVISNM Site 188
K_lactis_11 VVMSGILAVY G LVVAVLIAGG Site 188
K_lactis_16 IIFCEVVAIY G LIMAIVFSSK Site 188
B_taurus_16 IIFCEAVAIY G IIMAIVISNM Site 188
S_sclerotiorum_16 IIFCEVVAIY G VIMSIVFSSK Site 188
S_sclerotiorum_11 VVMSGIIAVY S LVIAVLIAGD Site 188
R_norvegicus_16 IIFCEAVAIY G IIMAIVISNM Site 188

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