V-ATPase Ancestral Library

If you use these results in your work, please cite: Hanson-Smith and Johnson, PLoS Comp. Bio., 2016


Overview | Alignments | Sites | Trees | Ancestors | Mutations


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Select a Site:

Site 228 in Alignment 'msaprobs'


Similarity to Other Alignments

What percentage of the residues at this site are inferred to be a single site (i.e. homologous) in the alignments produced by other methods? A value of 100% indicates that the existence of site 228 is robust across multiple methods. Values less than 100% indicate that other alignment methods made different homology inferences.

Similarity of Site 228 in 'msaprobs'
to Sites in 'muscle'

What percentage of the residues at this site in msaprobs are inferred to be a single site (i.e. homologous) in the alignments produced by muscle? A value of 100% indicates that the existence of site 228 is reproduced using the muscle method. Values less than 100% indicate that muscle made different homology inferences for the residues at this site.


Species Residue at Site 228
in 'msaprobs'
muscle

The residue for every species at site 228 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

M_musculus_16 LVSIIFCEAV A IYGIIMAIVI Site 185
O_mordax_3 IIPVVMAGII A IYGLVVAVLI Site 185
D_rerio_3 IIPVVMAGII A IYGLVVAVLI Site 185
M_grisea_16 LISIIFCEVV A IYGVIMAIVF Site 185
M_grisea_11 LIPVIMSGII A VYALVVAVLI Site 185
A_niger_3 IVPIVMAGII G IYGLVVSVLI Site 185
C_glabrata_3 IVPIVMAGII A IYGLVVSVLI Site 185
A_terreus_11 LIPVVMSGII A VYGLVIAVLI Site 185
A_terreus_16 LISIIFCEVV A IYGVIIAIVY Site 185
C_parvum_16 LISVIFCEAT A IYGVIATFLL Site 185
T_adhaerens_3 IIPVVMAGII A IYGLVVAVLI Site 185
T_castaneum_3 IIPVVMAGII A IYGLVIAVLI Site 185
X_tropicalis_3 IIPVVMAGII A IYGLVVAVLI Site 185
G_zeae_3 IVPVIMAGII G IYGLVVSVLI Site 185
L_elongisporus_3 VVPVVMAGII A IYGLVVSVLV Site 185
A_fumigatus_3 IVPIVMAGII G IYGLVVSVLI Site 185
M_grisea_3 IVPVIMAGII G IYGLVVSVLI Site 185
S_pombe_3 TIPVVMAGII A IYGLVVSVLI Site 185
C_albicans_3 LIPVVMSGIL S VYGLVVSVLI Site 185
B_bovis_16 LVSVIFCEAV G IYGLIVAVLL Site 185
C_muris_3 IIPAVMAGIL G IYGLIGALVI Site 185
S_purpuratus_3 IIPVVMAGIV G IYGLVVAAVI Site 185
C_immitis_16 LISIIFCEVV A IYGVIMSIVF Site 185
M_mulatta_16 LVSIIFCEAV A IYGIIMAIVI Site 185
Y_lipolytica_3 TVPVIMAGIL A IYGLVVSVLI Site 185
Species Residue at Site 228
in 'msaprobs'
muscle

The residue for every species at site 228 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

B_fuckeliana_16 LISIIFCEVV A IYGVIMSIVF Site 185
C_immitis_11 LVPVVMAGII A VYGLVVAVLI Site 185
A_mellifera_16 LISVIFCEAV A IYGLITAIVL Site 185
A_gossypii_11 LIPVVMSGIL A VYGLVVAVLV Site 185
T_annulata_16 LVSVIFCEAI G IYGLIVSVLL Site 185
N_vectensis_3 IIPVVMAGII A IYGLVVAVLI Site 185
S_Salar_16 LVSIIFCEAV A IYGIIMAIVI Site 185
L_elongisporus_16 LISIIFCEVV A IYGLIMAIVF Site 185
C_neoformans_16 LISIIFCEVV A IYGVIMAIVF Site 185
C_neoformans_11 LIPVVMSGII A VYGLVVSVLI Site 185
P_knowlesi_16 LISIIFCEAL G MYGVITAVFL Site 185
A_terreus_3 IVPIVMAGII G IYGLVVSVLI Site 185
A_pisum_3 IIPVVMAGII A IYGLVVAVLI Site 185
S_Salar_3 IIPVVMAGII A IYGLVVAVLI Site 185
P_marneffei_3 IVPIVMAGII A IYGLVVSVLI Site 185
P_stipitis_3 VVPVVMAGII A IYGLVVSVLV Site 185
A_fumigatus_11 LIPVVMSGII A VYGLVIAVLI Site 185
A_gossypii_3 IVPVIMAGII A IYGLVVSVLV Site 185
C_hominis_3 IIPAVMAGIL G VYGLIVGVII Site 185
C_muris_16 LISIIFCEAT A IYGVIATFLL Site 185
X_laevis_16 LVSIIFCEAV A IYGIIMAIVI Site 185
M_mulatta_3 IVPVVMAGII A IYGLVVAVLI Site 185
M_brevicollis_16 LISIIFCEAV A IYGIIMAIVF Site 185
K_lactis_3 IVPVIMAGII A IYGLVVSVLV Site 185
T_castaneum_16 LISVIFCEAV A IYGLITAIVL Site 185
Species Residue at Site 228
in 'msaprobs'
muscle

The residue for every species at site 228 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

C_intestinalis_16 LVSIIFCEAV A IYGIIISIVM Site 185
E_caballus_3 IIPVVMAGII A IYGLVVAVLI Site 185
C_globosum_3 IVPVIMAGII G IYGLVVSVLI Site 185
A_clavatus_3 IVPIVMAGII G IYGLVVSVLI Site 185
N_crassa_11 LIPVVMSGII A VYALVVAVLI Site 185
N_crassa_16 LISIIFCEVV A IYGVIMAIVF Site 185
X_tropicalis_16 LVSIIFCEAV A IYGIIMAIVI Site 185
P_anserina_11 LIPVVMSGII A VYALVISVLI Site 185
P_vivax_16 LISIIFCEAL G MYGVITAVFL Site 185
P_anserina_16 LISIIFCEVV A IYGVIMAIVF Site 185
H_sapiens_16 LVSIIFCEAV A IYGIIMAIVI Site 185
T_annulata_3 IIPVIMAGVL G IYGLIISIVI Site 185
C_intestinalis_3 VVPVVMAGIV A IYGVVIAVLI Site 185
L_elongisporus_11 LIPVVMSGIL S VYGLVVAVLI Site 185
A_gossypii_16 LISIIFCEVV A IYGLIMAIVF Site 185
A_pisum_16 LISVIFCEAV A IYGLITAIVM Site 185
N_crassa_3 IVPVIMAGII G IYGLVVSVLI Site 185
V_polyspora_3 VVPVVMAGII A IYGLVVSVLI Site 185
S_cerevisiae_3 IVPVIMAGII A IYGLVVSVLV Site 185
P_marneffei_16 LISIIFCEVV A IYGVIMAIVF Site 185
D_hansenii_3 IVPVIMAGII A IYGLVVSVLV Site 185
S_pombe_11 LIPVVMSGII G VYGLVMSVLI Site 185
T_guttata_3 IIPVVMAGII A IYGLVVAVLI Site 185
S_pombe_16 LISIIFCEVV A IYSLIIAIVF Site 185
B_fuckeliana_3 IVPVIMAGII G IYGLVVSVLI Site 185
Species Residue at Site 228
in 'msaprobs'
muscle

The residue for every species at site 228 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

T_adhaerens_16 LVSIIFCEAV A IYGIIMAIVL Site 185
S_cerevisiae_16 LISIIFCEVV A IYGLIIAIVF Site 185
R_norvegicus_3 IIPVVMAGII A IYGLVVAVLI Site 185
S_cerevisiae_11 LIPVVMSGIL A IYGLVVAVLI Site 185
B_taurus_3 IIPVVMAGII A IYGLVVAVLI Site 185
C_familiaris_3 IIPVVMAGII A IYGLVVAVLI Site 185
P_anserina_3 IVPVIMAGII G IYGLVVSVLI Site 185
P_marneffei_11 LIPVVMSGII A VYGLVVAVLI Site 185
P_knowlesi_3 ILPVVMAGVL G IYGIIMSILI Site 185
T_guttata_16 LVSIIFCEAV A IYGIIMAIVI Site 185
B_fuckeliana_11 LIPVVMSGII A VYSLVIAVLI Site 185
C_cinerea_okayama_3 SIPVVMAGII A IYGLVVSVLI Site 185
P_falciparum_16 LISIIFCEAL G MYGVITAVFL Site 185
N_vectensis_16 LVSIIFCEAV A IYGIIMSIVL Site 185
A_niger_11 LIPVVMSGII A VYGLVISVLI Site 185
A_niger_16 LISIIFCEVV A IYGVIMAIVF Site 185
C_parvum_3 IIPAVMAGIL G IYGLIGSLVI Site 185
S_purpuratus_16 LISIIFCEAV A IYGIIMAIVL Site 185
B_floridae_3 ILPVVMAGII A IYGLVVAVLI Site 185
Y_lipolytica_16 LISIIFCEVV A IYGLIMAIVF Site 185
A_mellifera_3 IIPVVMAGII A IYGLVVAVLI Site 185
A_clavatus_16 LISIIFCEVV A IYGVIMAIVF Site 185
A_clavatus_11 LIPVVMSGII A VYGLVIAVLI Site 185
S_sclerotiorum_3 IVPVIMAGII G IYGLVVSVLI Site 185
P_falciparum_3 ILPVVMAGVL G IYGIIMSILI Site 185
Species Residue at Site 228
in 'msaprobs'
muscle

The residue for every species at site 228 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

D_discoideum_16 IISIIFCEAV A IYGIILAIIL Site 185
C_cinerea_okayama_11 LIPVVMSGII A VYGLVVSVLI Site 185
D_hansenii_16 LISIIFCEVV A IYGLIMAIVF Site 185
D_hansenii_11 LIPVVMSGIL S VYGLVVSVLI Site 185
C_cinerea_okayama_16 -ACIIFCEVV A IYGVIIGIVY Site 185
P_vivax_3 ILPVVMAGVL G IYGIIMSILI Site 185
C_immitis_3 IVPIVMAGII G IYGLVVSVLI Site 185
G_zeae_11 LIPVVMSGII A VYSLVISVLI Site 185
C_neoformans_3 AIPVVMAGII G IYGLVVSVLI Site 185
H_sapiens_3 IIPVVMAGII A IYGLVVAVLI Site 185
G_zeae_16 LISIIFCEVV A IYGVIMAIVF Site 185
Y_lipolytica_11 LIPVVMSGIL S VYGLVVSVLI Site 185
M_brevicollis_3 IIPVVMAGII A IYGLVVSVLI Site 185
D_discoideum_3 FIPVIFAGVI A IYGLIICVIL Site 185
P_stipitis_16 LISIIFCEVV A IYGLIMAIVF Site 185
C_albicans_16 LISIIFCEVV A IYGLIMAIVF Site 185
C_albicans_11 LIPVVMSGIL S VYGLVVSVLI Site 185
P_stipitis_11 LIPVVMSGIL S VYGLVVAVLI Site 185
X_laevis_3 IIPVVMAGII A IYGLVVAVLI Site 185
C_glabrata_11 LIPVVMSGIL A IYGLVVAVLI Site 185
E_caballus_16 LVSIIFCEAV A IYGIIMAIVI Site 185
C_glabrata_16 LISIIFCEVV A IYGLIMAIVF Site 185
V_polyspora_11 LIPVVMSGIL A IYGLVVAVLI Site 185
V_polyspora_16 LISIIFCEVV A IYGLIIAIIF Site 185
C_hominis_16 LISVIFCEAT A IYGVIATFLL Site 185
Species Residue at Site 228
in 'msaprobs'
muscle

The residue for every species at site 228 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

C_globosum_11 LIPVVMSGIL A VYSLVISVLI Site 185
C_globosum_16 LISIIFCEVV A IYGVIMAIVF Site 185
O_mordax_16 LVSIIFCEAV A IYGIIMAIVI Site 185
D_rerio_16 LVSIIFCEAV A IYGIIMAIVI Site 185
B_bovis_3 IIPVIMAGVL G IYGLIMAVII Site 185
B_floridae_16 LISIIFCEAV A IYGIIMAIVM Site 185
M_musculus_3 IIPVVMAGII A IYGLVVAVLI Site 185
A_fumigatus_16 LISIIFCEVV A IYGVIMAIVF Site 185
C_familiaris_16 LVSIIFCEAV A IYGIIMAIVI Site 185
K_lactis_11 LIPVVMSGIL A VYGLVVAVLI Site 185
K_lactis_16 LISIIFCEVV A IYGLIMAIVF Site 185
B_taurus_16 LVSIIFCEAV A IYGIIMAIVI Site 185
S_sclerotiorum_16 LISIIFCEVV A IYGVIMSIVF Site 185
S_sclerotiorum_11 LIPVVMSGII A VYSLVIAVLI Site 185
R_norvegicus_16 LVSIIFCEAV A IYGIIMAIVI Site 185

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