V-ATPase Ancestral Library

If you use these results in your work, please cite: Hanson-Smith and Johnson, PLoS Comp. Bio., 2016


Overview | Alignments | Sites | Trees | Ancestors | Mutations


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Select a Site:

Site 225 in Alignment 'msaprobs'


Similarity to Other Alignments

What percentage of the residues at this site are inferred to be a single site (i.e. homologous) in the alignments produced by other methods? A value of 100% indicates that the existence of site 225 is robust across multiple methods. Values less than 100% indicate that other alignment methods made different homology inferences.

Similarity of Site 225 in 'msaprobs'
to Sites in 'muscle'

What percentage of the residues at this site in msaprobs are inferred to be a single site (i.e. homologous) in the alignments produced by muscle? A value of 100% indicates that the existence of site 225 is reproduced using the muscle method. Values less than 100% indicate that muscle made different homology inferences for the residues at this site.


Species Residue at Site 225
in 'msaprobs'
muscle

The residue for every species at site 225 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

M_musculus_16 TKNLVSIIFC E AVAIYGIIMA Site 182
O_mordax_3 MKSIIPVVMA G IIAIYGLVVA Site 182
D_rerio_3 MKSIIPVVMA G IIAIYGLVVA Site 182
M_grisea_16 TKNLISIIFC E VVAIYGVIMA Site 182
M_grisea_11 MKCLIPVIMS G IIAVYALVVA Site 182
A_niger_3 VKNIVPIVMA G IIGIYGLVVS Site 182
C_glabrata_3 IKSIVPIVMA G IIAIYGLVVS Site 182
A_terreus_11 MKSLIPVVMS G IIAVYGLVIA Site 182
A_terreus_16 TKNLISIIFC E VVAIYGVIIA Site 182
C_parvum_16 SKNLISVIFC E ATAIYGVIAT Site 182
T_adhaerens_3 MKSIIPVVMA G IIAIYGLVVA Site 182
T_castaneum_3 MKSIIPVVMA G IIAIYGLVIA Site 182
X_tropicalis_3 MKSIIPVVMA G IIAIYGLVVA Site 182
G_zeae_3 VKNIVPVIMA G IIGIYGLVVS Site 182
L_elongisporus_3 VKNVVPVVMA G IIAIYGLVVS Site 182
A_fumigatus_3 VKNIVPIVMA G IIGIYGLVVS Site 182
M_grisea_3 VKNIVPVIMA G IIGIYGLVVS Site 182
S_pombe_3 VKNTIPVVMA G IIAIYGLVVS Site 182
C_albicans_3 MKSLIPVVMS G ILSVYGLVVS Site 182
B_bovis_16 VKNLVSVIFC E AVGIYGLIVA Site 182
C_muris_3 MKSIIPAVMA G ILGIYGLIGA Site 182
S_purpuratus_3 MKSIIPVVMA G IVGIYGLVVA Site 182
C_immitis_16 TKNLISIIFC E VVAIYGVIMS Site 182
M_mulatta_16 TKNLVSIIFC E AVAIYGIIMA Site 182
Y_lipolytica_3 IKNTVPVIMA G ILAIYGLVVS Site 182
Species Residue at Site 225
in 'msaprobs'
muscle

The residue for every species at site 225 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

B_fuckeliana_16 TKNLISIIFC E VVAIYGVIMS Site 182
C_immitis_11 MKSLVPVVMA G IIAVYGLVVA Site 182
A_mellifera_16 TKNLISVIFC E AVAIYGLITA Site 182
A_gossypii_11 MKSLIPVVMS G ILAVYGLVVA Site 182
T_annulata_16 VKNLVSVIFC E AIGIYGLIVS Site 182
N_vectensis_3 MKSIIPVVMA G IIAIYGLVVA Site 182
S_Salar_16 TKNLVSIIFC E AVAIYGIIMA Site 182
L_elongisporus_16 TKNLISIIFC E VVAIYGLIMA Site 182
C_neoformans_16 TKNLISIIFC E VVAIYGVIMA Site 182
C_neoformans_11 MKSLIPVVMS G IIAVYGLVVS Site 182
P_knowlesi_16 SKNLISIIFC E ALGMYGVITA Site 182
A_terreus_3 VKNIVPIVMA G IIGIYGLVVS Site 182
A_pisum_3 MKSIIPVVMA G IIAIYGLVVA Site 182
S_Salar_3 MKSIIPVVMA G IIAIYGLVVA Site 182
P_marneffei_3 VRNIVPIVMA G IIAIYGLVVS Site 182
P_stipitis_3 VKNVVPVVMA G IIAIYGLVVS Site 182
A_fumigatus_11 MKSLIPVVMS G IIAVYGLVIA Site 182
A_gossypii_3 FKNIVPVIMA G IIAIYGLVVS Site 182
C_hominis_3 MRSIIPAVMA G ILGVYGLIVG Site 182
C_muris_16 SKNLISIIFC E ATAIYGVIAT Site 182
X_laevis_16 TKNLVSIIFC E AVAIYGIIMA Site 182
M_mulatta_3 MKSIVPVVMA G IIAIYGLVVA Site 182
M_brevicollis_16 TKNLISIIFC E AVAIYGIIMA Site 182
K_lactis_3 FKNIVPVIMA G IIAIYGLVVS Site 182
T_castaneum_16 TKNLISVIFC E AVAIYGLITA Site 182
Species Residue at Site 225
in 'msaprobs'
muscle

The residue for every species at site 225 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

C_intestinalis_16 SKNLVSIIFC E AVAIYGIIIS Site 182
E_caballus_3 MKSIIPVVMA G IIAIYGLVVA Site 182
C_globosum_3 VKNIVPVIMA G IIGIYGLVVS Site 182
A_clavatus_3 VKNIVPIVMA G IIGIYGLVVS Site 182
N_crassa_11 MKCLIPVVMS G IIAVYALVVA Site 182
N_crassa_16 TKNLISIIFC E VVAIYGVIMA Site 182
X_tropicalis_16 TKNLVSIIFC E AVAIYGIIMA Site 182
P_anserina_11 MKCLIPVVMS G IIAVYALVIS Site 182
P_vivax_16 SKNLISIIFC E ALGMYGVITA Site 182
P_anserina_16 TKNLISIIFC E VVAIYGVIMA Site 182
H_sapiens_16 TKNLVSIIFC E AVAIYGIIMA Site 182
T_annulata_3 MKSIIPVIMA G VLGIYGLIIS Site 182
C_intestinalis_3 MKSVVPVVMA G IVAIYGVVIA Site 182
L_elongisporus_11 MKSLIPVVMS G ILSVYGLVVA Site 182
A_gossypii_16 TKNLISIIFC E VVAIYGLIMA Site 182
A_pisum_16 TKNLISVIFC E AVAIYGLITA Site 182
N_crassa_3 VKNIVPVIMA G IIGIYGLVVS Site 182
V_polyspora_3 IKNVVPVVMA G IIAIYGLVVS Site 182
S_cerevisiae_3 FKNIVPVIMA G IIAIYGLVVS Site 182
P_marneffei_16 TKNLISIIFC E VVAIYGVIMA Site 182
D_hansenii_3 VKNIVPVIMA G IIAIYGLVVS Site 182
S_pombe_11 MKSLIPVVMS G IIGVYGLVMS Site 182
T_guttata_3 MKSIIPVVMA G IIAIYGLVVA Site 182
S_pombe_16 TKNLISIIFC E VVAIYSLIIA Site 182
B_fuckeliana_3 VKNIVPVIMA G IIGIYGLVVS Site 182
Species Residue at Site 225
in 'msaprobs'
muscle

The residue for every species at site 225 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

T_adhaerens_16 TKNLVSIIFC E AVAIYGIIMA Site 182
S_cerevisiae_16 TKNLISIIFC E VVAIYGLIIA Site 182
R_norvegicus_3 MKSIIPVVMA G IIAIYGLVVA Site 182
S_cerevisiae_11 MKSLIPVVMS G ILAIYGLVVA Site 182
B_taurus_3 MKSIIPVVMA G IIAIYGLVVA Site 182
C_familiaris_3 MKSIIPVVMA G IIAIYGLVVA Site 182
P_anserina_3 VKNIVPVIMA G IIGIYGLVVS Site 182
P_marneffei_11 MRSLIPVVMS G IIAVYGLVVA Site 182
P_knowlesi_3 MKSILPVVMA G VLGIYGIIMS Site 182
T_guttata_16 TKNLVSIIFC E AVAIYGIIMA Site 182
B_fuckeliana_11 MKSLIPVVMS G IIAVYSLVIA Site 182
C_cinerea_okayama_3 MKCSIPVVMA G IIAIYGLVVS Site 182
P_falciparum_16 SKNLISIIFC E ALGMYGVITA Site 182
N_vectensis_16 AKNLVSIIFC E AVAIYGIIMS Site 182
A_niger_11 MKSLIPVVMS G IIAVYGLVIS Site 182
A_niger_16 TKNLISIIFC E VVAIYGVIMA Site 182
C_parvum_3 MRSIIPAVMA G ILGIYGLIGS Site 182
S_purpuratus_16 TKNLISIIFC E AVAIYGIIMA Site 182
B_floridae_3 MKSILPVVMA G IIAIYGLVVA Site 182
Y_lipolytica_16 TKNLISIIFC E VVAIYGLIMA Site 182
A_mellifera_3 MKSIIPVVMA G IIAIYGLVVA Site 182
A_clavatus_16 TKNLISIIFC E VVAIYGVIMA Site 182
A_clavatus_11 MKSLIPVVMS G IIAVYGLVIA Site 182
S_sclerotiorum_3 VKNIVPVIMA G IIGIYGLVVS Site 182
P_falciparum_3 MKSILPVVMA G VLGIYGIIMS Site 182
Species Residue at Site 225
in 'msaprobs'
muscle

The residue for every species at site 225 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

D_discoideum_16 SKNIISIIFC E AVAIYGIILA Site 182
C_cinerea_okayama_11 MKSLIPVVMS G IIAVYGLVVS Site 182
D_hansenii_16 TKNLISIIFC E VVAIYGLIMA Site 182
D_hansenii_11 MKSLIPVVMS G ILSVYGLVVS Site 182
C_cinerea_okayama_16 ----ACIIFC E VVAIYGVIIG Site 182
P_vivax_3 MKSILPVVMA G VLGIYGIIMS Site 182
C_immitis_3 VKNIVPIVMA G IIGIYGLVVS Site 182
G_zeae_11 MKCLIPVVMS G IIAVYSLVIS Site 182
C_neoformans_3 MKCAIPVVMA G IIGIYGLVVS Site 182
H_sapiens_3 MKSIIPVVMA G IIAIYGLVVA Site 182
G_zeae_16 TKNLISIIFC E VVAIYGVIMA Site 182
Y_lipolytica_11 MKSLIPVVMS G ILSVYGLVVS Site 182
M_brevicollis_3 MKSIIPVVMA G IIAIYGLVVS Site 182
D_discoideum_3 IKAFIPVIFA G VIAIYGLIIC Site 182
P_stipitis_16 TKNLISIIFC E VVAIYGLIMA Site 182
C_albicans_16 TKNLISIIFC E VVAIYGLIMA Site 182
C_albicans_11 MKSLIPVVMS G ILSVYGLVVS Site 182
P_stipitis_11 MKSLIPVVMS G ILSVYGLVVA Site 182
X_laevis_3 MKSIIPVVMA G IIAIYGLVVA Site 182
C_glabrata_11 MKSLIPVVMS G ILAIYGLVVA Site 182
E_caballus_16 TKNLVSIIFC E AVAIYGIIMA Site 182
C_glabrata_16 TKNLISIIFC E VVAIYGLIMA Site 182
V_polyspora_11 MKSLIPVVMS G ILAIYGLVVA Site 182
V_polyspora_16 TKNLISIIFC E VVAIYGLIIA Site 182
C_hominis_16 SKNLISVIFC E ATAIYGVIAT Site 182
Species Residue at Site 225
in 'msaprobs'
muscle

The residue for every species at site 225 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

C_globosum_11 MKCLIPVVMS G ILAVYSLVIS Site 182
C_globosum_16 TKNLISIIFC E VVAIYGVIMA Site 182
O_mordax_16 TKNLVSIIFC E AVAIYGIIMA Site 182
D_rerio_16 TKNLVSIIFC E AVAIYGIIMA Site 182
B_bovis_3 MRSIIPVIMA G VLGIYGLIMA Site 182
B_floridae_16 TKNLISIIFC E AVAIYGIIMA Site 182
M_musculus_3 MKSIIPVVMA G IIAIYGLVVA Site 182
A_fumigatus_16 TKNLISIIFC E VVAIYGVIMA Site 182
C_familiaris_16 TKNLVSIIFC E AVAIYGIIMA Site 182
K_lactis_11 MKSLIPVVMS G ILAVYGLVVA Site 182
K_lactis_16 TKNLISIIFC E VVAIYGLIMA Site 182
B_taurus_16 TKNLVSIIFC E AVAIYGIIMA Site 182
S_sclerotiorum_16 TKNLISIIFC E VVAIYGVIMS Site 182
S_sclerotiorum_11 MKSLIPVVMS G IIAVYSLVIA Site 182
R_norvegicus_16 TKNLVSIIFC E AVAIYGIIMA Site 182

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