V-ATPase Ancestral Library

If you use these results in your work, please cite: Hanson-Smith and Johnson, PLoS Comp. Bio., 2016


Overview | Alignments | Sites | Trees | Ancestors | Mutations


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Select a Site:

Site 224 in Alignment 'msaprobs'


Similarity to Other Alignments

What percentage of the residues at this site are inferred to be a single site (i.e. homologous) in the alignments produced by other methods? A value of 100% indicates that the existence of site 224 is robust across multiple methods. Values less than 100% indicate that other alignment methods made different homology inferences.

Similarity of Site 224 in 'msaprobs'
to Sites in 'muscle'

What percentage of the residues at this site in msaprobs are inferred to be a single site (i.e. homologous) in the alignments produced by muscle? A value of 100% indicates that the existence of site 224 is reproduced using the muscle method. Values less than 100% indicate that muscle made different homology inferences for the residues at this site.


Species Residue at Site 224
in 'msaprobs'
muscle

The residue for every species at site 224 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

M_musculus_16 KTKNLVSIIF C EAVAIYGIIM Site 181
O_mordax_3 IMKSIIPVVM A GIIAIYGLVV Site 181
D_rerio_3 IMKSIIPVVM A GIIAIYGLVV Site 181
M_grisea_16 RTKNLISIIF C EVVAIYGVIM Site 181
M_grisea_11 IMKCLIPVIM S GIIAVYALVV Site 181
A_niger_3 IVKNIVPIVM A GIIGIYGLVV Site 181
C_glabrata_3 LIKSIVPIVM A GIIAIYGLVV Site 181
A_terreus_11 IMKSLIPVVM S GIIAVYGLVI Site 181
A_terreus_16 RTKNLISIIF C EVVAIYGVII Site 181
C_parvum_16 RSKNLISVIF C EATAIYGVIA Site 181
T_adhaerens_3 IMKSIIPVVM A GIIAIYGLVV Site 181
T_castaneum_3 IMKSIIPVVM A GIIAIYGLVI Site 181
X_tropicalis_3 IMKSIIPVVM A GIIAIYGLVV Site 181
G_zeae_3 IVKNIVPVIM A GIIGIYGLVV Site 181
L_elongisporus_3 LVKNVVPVVM A GIIAIYGLVV Site 181
A_fumigatus_3 IVKNIVPIVM A GIIGIYGLVV Site 181
M_grisea_3 IVKNIVPVIM A GIIGIYGLVV Site 181
S_pombe_3 IVKNTIPVVM A GIIAIYGLVV Site 181
C_albicans_3 IMKSLIPVVM S GILSVYGLVV Site 181
B_bovis_16 TVKNLVSVIF C EAVGIYGLIV Site 181
C_muris_3 IMKSIIPAVM A GILGIYGLIG Site 181
S_purpuratus_3 IMKSIIPVVM A GIVGIYGLVV Site 181
C_immitis_16 RTKNLISIIF C EVVAIYGVIM Site 181
M_mulatta_16 KTKNLVSIIF C EAVAIYGIIM Site 181
Y_lipolytica_3 LIKNTVPVIM A GILAIYGLVV Site 181
Species Residue at Site 224
in 'msaprobs'
muscle

The residue for every species at site 224 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

B_fuckeliana_16 RTKNLISIIF C EVVAIYGVIM Site 181
C_immitis_11 IMKSLVPVVM A GIIAVYGLVV Site 181
A_mellifera_16 KTKNLISVIF C EAVAIYGLIT Site 181
A_gossypii_11 IMKSLIPVVM S GILAVYGLVV Site 181
T_annulata_16 TVKNLVSVIF C EAIGIYGLIV Site 181
N_vectensis_3 IMKSIIPVVM A GIIAIYGLVV Site 181
S_Salar_16 KTKNLVSIIF C EAVAIYGIIM Site 181
L_elongisporus_16 TTKNLISIIF C EVVAIYGLIM Site 181
C_neoformans_16 RTKNLISIIF C EVVAIYGVIM Site 181
C_neoformans_11 IMKSLIPVVM S GIIAVYGLVV Site 181
P_knowlesi_16 ISKNLISIIF C EALGMYGVIT Site 181
A_terreus_3 IVKNIVPIVM A GIIGIYGLVV Site 181
A_pisum_3 IMKSIIPVVM A GIIAIYGLVV Site 181
S_Salar_3 IMKSIIPVVM A GIIAIYGLVV Site 181
P_marneffei_3 IVRNIVPIVM A GIIAIYGLVV Site 181
P_stipitis_3 LVKNVVPVVM A GIIAIYGLVV Site 181
A_fumigatus_11 IMKSLIPVVM S GIIAVYGLVI Site 181
A_gossypii_3 LFKNIVPVIM A GIIAIYGLVV Site 181
C_hominis_3 VMRSIIPAVM A GILGVYGLIV Site 181
C_muris_16 RSKNLISIIF C EATAIYGVIA Site 181
X_laevis_16 KTKNLVSIIF C EAVAIYGIIM Site 181
M_mulatta_3 IMKSIVPVVM A GIIAIYGLVV Site 181
M_brevicollis_16 KTKNLISIIF C EAVAIYGIIM Site 181
K_lactis_3 LFKNIVPVIM A GIIAIYGLVV Site 181
T_castaneum_16 KTKNLISVIF C EAVAIYGLIT Site 181
Species Residue at Site 224
in 'msaprobs'
muscle

The residue for every species at site 224 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

C_intestinalis_16 YSKNLVSIIF C EAVAIYGIII Site 181
E_caballus_3 IMKSIIPVVM A GIIAIYGLVV Site 181
C_globosum_3 IVKNIVPVIM A GIIGIYGLVV Site 181
A_clavatus_3 IVKNIVPIVM A GIIGIYGLVV Site 181
N_crassa_11 IMKCLIPVVM S GIIAVYALVV Site 181
N_crassa_16 RTKNLISIIF C EVVAIYGVIM Site 181
X_tropicalis_16 KTKNLVSIIF C EAVAIYGIIM Site 181
P_anserina_11 IMKCLIPVVM S GIIAVYALVI Site 181
P_vivax_16 ISKNLISIIF C EALGMYGVIT Site 181
P_anserina_16 RTKNLISIIF C EVVAIYGVIM Site 181
H_sapiens_16 KTKNLVSIIF C EAVAIYGIIM Site 181
T_annulata_3 VMKSIIPVIM A GVLGIYGLII Site 181
C_intestinalis_3 IMKSVVPVVM A GIVAIYGVVI Site 181
L_elongisporus_11 IMKSLIPVVM S GILSVYGLVV Site 181
A_gossypii_16 TTKNLISIIF C EVVAIYGLIM Site 181
A_pisum_16 KTKNLISVIF C EAVAIYGLIT Site 181
N_crassa_3 IVKNIVPVIM A GIIGIYGLVV Site 181
V_polyspora_3 LIKNVVPVVM A GIIAIYGLVV Site 181
S_cerevisiae_3 LFKNIVPVIM A GIIAIYGLVV Site 181
P_marneffei_16 RTKNLISIIF C EVVAIYGVIM Site 181
D_hansenii_3 LVKNIVPVIM A GIIAIYGLVV Site 181
S_pombe_11 VMKSLIPVVM S GIIGVYGLVM Site 181
T_guttata_3 IMKSIIPVVM A GIIAIYGLVV Site 181
S_pombe_16 KTKNLISIIF C EVVAIYSLII Site 181
B_fuckeliana_3 IVKNIVPVIM A GIIGIYGLVV Site 181
Species Residue at Site 224
in 'msaprobs'
muscle

The residue for every species at site 224 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

T_adhaerens_16 KTKNLVSIIF C EAVAIYGIIM Site 181
S_cerevisiae_16 TTKNLISIIF C EVVAIYGLII Site 181
R_norvegicus_3 IMKSIIPVVM A GIIAIYGLVV Site 181
S_cerevisiae_11 IMKSLIPVVM S GILAIYGLVV Site 181
B_taurus_3 IMKSIIPVVM A GIIAIYGLVV Site 181
C_familiaris_3 IMKSIIPVVM A GIIAIYGLVV Site 181
P_anserina_3 IVKNIVPVIM A GIIGIYGLVV Site 181
P_marneffei_11 IMRSLIPVVM S GIIAVYGLVV Site 181
P_knowlesi_3 IMKSILPVVM A GVLGIYGIIM Site 181
T_guttata_16 KTKNLVSIIF C EAVAIYGIIM Site 181
B_fuckeliana_11 IMKSLIPVVM S GIIAVYSLVI Site 181
C_cinerea_okayama_3 MMKCSIPVVM A GIIAIYGLVV Site 181
P_falciparum_16 ISKNLISIIF C EALGMYGVIT Site 181
N_vectensis_16 KAKNLVSIIF C EAVAIYGIIM Site 181
A_niger_11 IMKSLIPVVM S GIIAVYGLVI Site 181
A_niger_16 RTKNLISIIF C EVVAIYGVIM Site 181
C_parvum_3 IMRSIIPAVM A GILGIYGLIG Site 181
S_purpuratus_16 RTKNLISIIF C EAVAIYGIIM Site 181
B_floridae_3 IMKSILPVVM A GIIAIYGLVV Site 181
Y_lipolytica_16 TTKNLISIIF C EVVAIYGLIM Site 181
A_mellifera_3 IMKSIIPVVM A GIIAIYGLVV Site 181
A_clavatus_16 RTKNLISIIF C EVVAIYGVIM Site 181
A_clavatus_11 IMKSLIPVVM S GIIAVYGLVI Site 181
S_sclerotiorum_3 IVKNIVPVIM A GIIGIYGLVV Site 181
P_falciparum_3 IMKSILPVVM A GVLGIYGIIM Site 181
Species Residue at Site 224
in 'msaprobs'
muscle

The residue for every species at site 224 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

D_discoideum_16 RSKNIISIIF C EAVAIYGIIL Site 181
C_cinerea_okayama_11 IMKSLIPVVM S GIIAVYGLVV Site 181
D_hansenii_16 TTKNLISIIF C EVVAIYGLIM Site 181
D_hansenii_11 IMKSLIPVVM S GILSVYGLVV Site 181
C_cinerea_okayama_16 -----ACIIF C EVVAIYGVII Site 181
P_vivax_3 IMKSILPVVM A GVLGIYGIIM Site 181
C_immitis_3 IVKNIVPIVM A GIIGIYGLVV Site 181
G_zeae_11 IMKCLIPVVM S GIIAVYSLVI Site 181
C_neoformans_3 MMKCAIPVVM A GIIGIYGLVV Site 181
H_sapiens_3 IMKSIIPVVM A GIIAIYGLVV Site 181
G_zeae_16 RTKNLISIIF C EVVAIYGVIM Site 181
Y_lipolytica_11 IMKSLIPVVM S GILSVYGLVV Site 181
M_brevicollis_3 IMKSIIPVVM A GIIAIYGLVV Site 181
D_discoideum_3 VIKAFIPVIF A GVIAIYGLII Site 181
P_stipitis_16 TTKNLISIIF C EVVAIYGLIM Site 181
C_albicans_16 TTKNLISIIF C EVVAIYGLIM Site 181
C_albicans_11 IMKSLIPVVM S GILSVYGLVV Site 181
P_stipitis_11 IMKSLIPVVM S GILSVYGLVV Site 181
X_laevis_3 IMKSIIPVVM A GIIAIYGLVV Site 181
C_glabrata_11 IMKSLIPVVM S GILAIYGLVV Site 181
E_caballus_16 KTKNLVSIIF C EAVAIYGIIM Site 181
C_glabrata_16 TTKNLISIIF C EVVAIYGLIM Site 181
V_polyspora_11 LMKSLIPVVM S GILAIYGLVV Site 181
V_polyspora_16 TTKNLISIIF C EVVAIYGLII Site 181
C_hominis_16 RSKNLISVIF C EATAIYGVIA Site 181
Species Residue at Site 224
in 'msaprobs'
muscle

The residue for every species at site 224 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

C_globosum_11 IMKCLIPVVM S GILAVYSLVI Site 181
C_globosum_16 RTKNLISIIF C EVVAIYGVIM Site 181
O_mordax_16 KTKNLVSIIF C EAVAIYGIIM Site 181
D_rerio_16 KTKNLVSIIF C EAVAIYGIIM Site 181
B_bovis_3 VMRSIIPVIM A GVLGIYGLIM Site 181
B_floridae_16 RTKNLISIIF C EAVAIYGIIM Site 181
M_musculus_3 IMKSIIPVVM A GIIAIYGLVV Site 181
A_fumigatus_16 RTKNLISIIF C EVVAIYGVIM Site 181
C_familiaris_16 KTKNLVSIIF C EAVAIYGIIM Site 181
K_lactis_11 IMKSLIPVVM S GILAVYGLVV Site 181
K_lactis_16 TTKNLISIIF C EVVAIYGLIM Site 181
B_taurus_16 KTKNLVSIIF C EAVAIYGIIM Site 181
S_sclerotiorum_16 RTKNLISIIF C EVVAIYGVIM Site 181
S_sclerotiorum_11 IMKSLIPVVM S GIIAVYSLVI Site 181
R_norvegicus_16 KTKNLVSIIF C EAVAIYGIIM Site 181

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