V-ATPase Ancestral Library

If you use these results in your work, please cite: Hanson-Smith and Johnson, PLoS Comp. Bio., 2016


Overview | Alignments | Sites | Trees | Ancestors | Mutations


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Select a Site:

Site 223 in Alignment 'msaprobs'


Similarity to Other Alignments

What percentage of the residues at this site are inferred to be a single site (i.e. homologous) in the alignments produced by other methods? A value of 100% indicates that the existence of site 223 is robust across multiple methods. Values less than 100% indicate that other alignment methods made different homology inferences.

Similarity of Site 223 in 'msaprobs'
to Sites in 'muscle'

What percentage of the residues at this site in msaprobs are inferred to be a single site (i.e. homologous) in the alignments produced by muscle? A value of 100% indicates that the existence of site 223 is reproduced using the muscle method. Values less than 100% indicate that muscle made different homology inferences for the residues at this site.


Species Residue at Site 223
in 'msaprobs'
muscle

The residue for every species at site 223 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

M_musculus_16 IKTKNLVSII F CEAVAIYGII Site 180
O_mordax_3 LIMKSIIPVV M AGIIAIYGLV Site 180
D_rerio_3 LIMKSIIPVV M AGIIAIYGLV Site 180
M_grisea_16 IRTKNLISII F CEVVAIYGVI Site 180
M_grisea_11 LIMKCLIPVI M SGIIAVYALV Site 180
A_niger_3 LIVKNIVPIV M AGIIGIYGLV Site 180
C_glabrata_3 LLIKSIVPIV M AGIIAIYGLV Site 180
A_terreus_11 LIMKSLIPVV M SGIIAVYGLV Site 180
A_terreus_16 IRTKNLISII F CEVVAIYGVI Site 180
C_parvum_16 IRSKNLISVI F CEATAIYGVI Site 180
T_adhaerens_3 LIMKSIIPVV M AGIIAIYGLV Site 180
T_castaneum_3 LIMKSIIPVV M AGIIAIYGLV Site 180
X_tropicalis_3 LIMKSIIPVV M AGIIAIYGLV Site 180
G_zeae_3 LIVKNIVPVI M AGIIGIYGLV Site 180
L_elongisporus_3 LLVKNVVPVV M AGIIAIYGLV Site 180
A_fumigatus_3 LIVKNIVPIV M AGIIGIYGLV Site 180
M_grisea_3 LIVKNIVPVI M AGIIGIYGLV Site 180
S_pombe_3 LIVKNTIPVV M AGIIAIYGLV Site 180
C_albicans_3 LIMKSLIPVV M SGILSVYGLV Site 180
B_bovis_16 ITVKNLVSVI F CEAVGIYGLI Site 180
C_muris_3 LIMKSIIPAV M AGILGIYGLI Site 180
S_purpuratus_3 LIMKSIIPVV M AGIVGIYGLV Site 180
C_immitis_16 IRTKNLISII F CEVVAIYGVI Site 180
M_mulatta_16 IKTKNLVSII F CEAVAIYGII Site 180
Y_lipolytica_3 LLIKNTVPVI M AGILAIYGLV Site 180
Species Residue at Site 223
in 'msaprobs'
muscle

The residue for every species at site 223 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

B_fuckeliana_16 IRTKNLISII F CEVVAIYGVI Site 180
C_immitis_11 LIMKSLVPVV M AGIIAVYGLV Site 180
A_mellifera_16 IKTKNLISVI F CEAVAIYGLI Site 180
A_gossypii_11 LIMKSLIPVV M SGILAVYGLV Site 180
T_annulata_16 ITVKNLVSVI F CEAIGIYGLI Site 180
N_vectensis_3 LIMKSIIPVV M AGIIAIYGLV Site 180
S_Salar_16 IKTKNLVSII F CEAVAIYGII Site 180
L_elongisporus_16 ITTKNLISII F CEVVAIYGLI Site 180
C_neoformans_16 IRTKNLISII F CEVVAIYGVI Site 180
C_neoformans_11 LIMKSLIPVV M SGIIAVYGLV Site 180
P_knowlesi_16 IISKNLISII F CEALGMYGVI Site 180
A_terreus_3 LIVKNIVPIV M AGIIGIYGLV Site 180
A_pisum_3 LIMKSIIPVV M AGIIAIYGLV Site 180
S_Salar_3 LIMKSIIPVV M AGIIAIYGLV Site 180
P_marneffei_3 LIVRNIVPIV M AGIIAIYGLV Site 180
P_stipitis_3 LLVKNVVPVV M AGIIAIYGLV Site 180
A_fumigatus_11 LIMKSLIPVV M SGIIAVYGLV Site 180
A_gossypii_3 LLFKNIVPVI M AGIIAIYGLV Site 180
C_hominis_3 LVMRSIIPAV M AGILGVYGLI Site 180
C_muris_16 IRSKNLISII F CEATAIYGVI Site 180
X_laevis_16 IKTKNLVSII F CEAVAIYGII Site 180
M_mulatta_3 LIMKSIVPVV M AGIIAIYGLV Site 180
M_brevicollis_16 IKTKNLISII F CEAVAIYGII Site 180
K_lactis_3 LLFKNIVPVI M AGIIAIYGLV Site 180
T_castaneum_16 IKTKNLISVI F CEAVAIYGLI Site 180
Species Residue at Site 223
in 'msaprobs'
muscle

The residue for every species at site 223 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

C_intestinalis_16 IYSKNLVSII F CEAVAIYGII Site 180
E_caballus_3 LIMKSIIPVV M AGIIAIYGLV Site 180
C_globosum_3 LIVKNIVPVI M AGIIGIYGLV Site 180
A_clavatus_3 LIVKNIVPIV M AGIIGIYGLV Site 180
N_crassa_11 LIMKCLIPVV M SGIIAVYALV Site 180
N_crassa_16 IRTKNLISII F CEVVAIYGVI Site 180
X_tropicalis_16 IKTKNLVSII F CEAVAIYGII Site 180
P_anserina_11 LIMKCLIPVV M SGIIAVYALV Site 180
P_vivax_16 IISKNLISII F CEALGMYGVI Site 180
P_anserina_16 IRTKNLISII F CEVVAIYGVI Site 180
H_sapiens_16 IKTKNLVSII F CEAVAIYGII Site 180
T_annulata_3 LVMKSIIPVI M AGVLGIYGLI Site 180
C_intestinalis_3 LIMKSVVPVV M AGIVAIYGVV Site 180
L_elongisporus_11 LIMKSLIPVV M SGILSVYGLV Site 180
A_gossypii_16 ITTKNLISII F CEVVAIYGLI Site 180
A_pisum_16 IKTKNLISVI F CEAVAIYGLI Site 180
N_crassa_3 LIVKNIVPVI M AGIIGIYGLV Site 180
V_polyspora_3 LLIKNVVPVV M AGIIAIYGLV Site 180
S_cerevisiae_3 LLFKNIVPVI M AGIIAIYGLV Site 180
P_marneffei_16 IRTKNLISII F CEVVAIYGVI Site 180
D_hansenii_3 LLVKNIVPVI M AGIIAIYGLV Site 180
S_pombe_11 IVMKSLIPVV M SGIIGVYGLV Site 180
T_guttata_3 LIMKSIIPVV M AGIIAIYGLV Site 180
S_pombe_16 IKTKNLISII F CEVVAIYSLI Site 180
B_fuckeliana_3 LIVKNIVPVI M AGIIGIYGLV Site 180
Species Residue at Site 223
in 'msaprobs'
muscle

The residue for every species at site 223 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

T_adhaerens_16 IKTKNLVSII F CEAVAIYGII Site 180
S_cerevisiae_16 ITTKNLISII F CEVVAIYGLI Site 180
R_norvegicus_3 LIMKSIIPVV M AGIIAIYGLV Site 180
S_cerevisiae_11 LIMKSLIPVV M SGILAIYGLV Site 180
B_taurus_3 MIMKSIIPVV M AGIIAIYGLV Site 180
C_familiaris_3 LIMKSIIPVV M AGIIAIYGLV Site 180
P_anserina_3 LIVKNIVPVI M AGIIGIYGLV Site 180
P_marneffei_11 LIMRSLIPVV M SGIIAVYGLV Site 180
P_knowlesi_3 LIMKSILPVV M AGVLGIYGII Site 180
T_guttata_16 IKTKNLVSII F CEAVAIYGII Site 180
B_fuckeliana_11 LIMKSLIPVV M SGIIAVYSLV Site 180
C_cinerea_okayama_3 MMMKCSIPVV M AGIIAIYGLV Site 180
P_falciparum_16 IISKNLISII F CEALGMYGVI Site 180
N_vectensis_16 IKAKNLVSII F CEAVAIYGII Site 180
A_niger_11 LIMKSLIPVV M SGIIAVYGLV Site 180
A_niger_16 IRTKNLISII F CEVVAIYGVI Site 180
C_parvum_3 LIMRSIIPAV M AGILGIYGLI Site 180
S_purpuratus_16 IRTKNLISII F CEAVAIYGII Site 180
B_floridae_3 LIMKSILPVV M AGIIAIYGLV Site 180
Y_lipolytica_16 ITTKNLISII F CEVVAIYGLI Site 180
A_mellifera_3 LIMKSIIPVV M AGIIAIYGLV Site 180
A_clavatus_16 IRTKNLISII F CEVVAIYGVI Site 180
A_clavatus_11 LIMKSLIPVV M SGIIAVYGLV Site 180
S_sclerotiorum_3 LIVKNIVPVI M AGIIGIYGLV Site 180
P_falciparum_3 LIMKSILPVV M AGVLGIYGII Site 180
Species Residue at Site 223
in 'msaprobs'
muscle

The residue for every species at site 223 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

D_discoideum_16 IRSKNIISII F CEAVAIYGII Site 180
C_cinerea_okayama_11 LIMKSLIPVV M SGIIAVYGLV Site 180
D_hansenii_16 ITTKNLISII F CEVVAIYGLI Site 180
D_hansenii_11 LIMKSLIPVV M SGILSVYGLV Site 180
C_cinerea_okayama_16 ------ACII F CEVVAIYGVI Site 180
P_vivax_3 LIMKSILPVV M AGVLGIYGII Site 180
C_immitis_3 LIVKNIVPIV M AGIIGIYGLV Site 180
G_zeae_11 LIMKCLIPVV M SGIIAVYSLV Site 180
C_neoformans_3 LMMKCAIPVV M AGIIGIYGLV Site 180
H_sapiens_3 QIMKSIIPVV M AGIIAIYGLV Site 180
G_zeae_16 IRTKNLISII F CEVVAIYGVI Site 180
Y_lipolytica_11 LIMKSLIPVV M SGILSVYGLV Site 180
M_brevicollis_3 LIMKSIIPVV M AGIIAIYGLV Site 180
D_discoideum_3 LVIKAFIPVI F AGVIAIYGLI Site 180
P_stipitis_16 ITTKNLISII F CEVVAIYGLI Site 180
C_albicans_16 ITTKNLISII F CEVVAIYGLI Site 180
C_albicans_11 LIMKSLIPVV M SGILSVYGLV Site 180
P_stipitis_11 LIMKSLIPVV M SGILSVYGLV Site 180
X_laevis_3 LIMKSIIPVV M AGIIAIYGLV Site 180
C_glabrata_11 LIMKSLIPVV M SGILAIYGLV Site 180
E_caballus_16 IKTKNLVSII F CEAVAIYGII Site 180
C_glabrata_16 ITTKNLISII F CEVVAIYGLI Site 180
V_polyspora_11 LLMKSLIPVV M SGILAIYGLV Site 180
V_polyspora_16 ITTKNLISII F CEVVAIYGLI Site 180
C_hominis_16 IRSKNLISVI F CEATAIYGVI Site 180
Species Residue at Site 223
in 'msaprobs'
muscle

The residue for every species at site 223 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

C_globosum_11 LIMKCLIPVV M SGILAVYSLV Site 180
C_globosum_16 IRTKNLISII F CEVVAIYGVI Site 180
O_mordax_16 IKTKNLVSII F CEAVAIYGII Site 180
D_rerio_16 IKTKNLVSII F CEAVAIYGII Site 180
B_bovis_3 LVMRSIIPVI M AGVLGIYGLI Site 180
B_floridae_16 IRTKNLISII F CEAVAIYGII Site 180
M_musculus_3 LIMKSIIPVV M AGIIAIYGLV Site 180
A_fumigatus_16 IRTKNLISII F CEVVAIYGVI Site 180
C_familiaris_16 IKTKNLVSII F CEAVAIYGII Site 180
K_lactis_11 LIMKSLIPVV M SGILAVYGLV Site 180
K_lactis_16 ITTKNLISII F CEVVAIYGLI Site 180
B_taurus_16 IKTKNLVSII F CEAVAIYGII Site 180
S_sclerotiorum_16 IRTKNLISII F CEVVAIYGVI Site 180
S_sclerotiorum_11 LIMKSLIPVV M SGIIAVYSLV Site 180
R_norvegicus_16 IKTKNLVSII F CEAVAIYGII Site 180

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