V-ATPase Ancestral Library

If you use these results in your work, please cite: Hanson-Smith and Johnson, PLoS Comp. Bio., 2016


Overview | Alignments | Sites | Trees | Ancestors | Mutations


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Select a Site:

Site 215 in Alignment 'msaprobs'


Similarity to Other Alignments

What percentage of the residues at this site are inferred to be a single site (i.e. homologous) in the alignments produced by other methods? A value of 100% indicates that the existence of site 215 is robust across multiple methods. Values less than 100% indicate that other alignment methods made different homology inferences.

Similarity of Site 215 in 'msaprobs'
to Sites in 'muscle'

What percentage of the residues at this site in msaprobs are inferred to be a single site (i.e. homologous) in the alignments produced by muscle? A value of 100% indicates that the existence of site 215 is reproduced using the muscle method. Values less than 100% indicate that muscle made different homology inferences for the residues at this site.


Species Residue at Site 215
in 'msaprobs'
muscle

The residue for every species at site 215 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

M_musculus_16 GGGVKAPRIK T KNLVSIIFCE Site 172
O_mordax_3 AMSVMRPELI M KSIIPVVMAG Site 172
D_rerio_3 AMSVMRPELI M KSIIPVVMAG Site 172
M_grisea_16 GGGVKAPRIR T KNLISIIFCE Site 172
M_grisea_11 GVGTFRPDLI M KCLIPVIMSG Site 172
A_niger_3 GMAVLRPDLI V KNIVPIVMAG Site 172
C_glabrata_3 VTCVLRPDLL I KSIVPIVMAG Site 172
A_terreus_11 GVGTFRPDLI M KSLIPVVMSG Site 172
A_terreus_16 AGGVKAPRIR T KNLISIIFCE Site 172
C_parvum_16 GAALRSPRIR S KNLISVIFCE Site 172
T_adhaerens_3 AMSVMRPELI M KSIIPVVMAG Site 172
T_castaneum_3 AMSVMRPELI M KSIIPVVMAG Site 172
X_tropicalis_3 AMSVMRPELI M KSIIPVVMAG Site 172
G_zeae_3 AMGVLRPDLI V KNIVPVIMAG Site 172
L_elongisporus_3 ATSVTRPDLL V KNVVPVVMAG Site 172
A_fumigatus_3 GMAVLRPDLI V KNIVPIVMAG Site 172
M_grisea_3 AMGVLRPDLI V KNIVPVIMAG Site 172
S_pombe_3 AMGVLRPDLI V KNTIPVVMAG Site 172
C_albicans_3 GIGTFKPELI M KSLIPVVMSG Site 172
B_bovis_16 GGSVNSPRIT V KNLVSVIFCE Site 172
C_muris_3 SMGVMRPELI M KSIIPAVMAG Site 172
S_purpuratus_3 AMSVMRPELI M KSIIPVVMAG Site 172
C_immitis_16 GGGVKAPRIR T KNLISIIFCE Site 172
M_mulatta_16 GGGVKAPRIK T KNLVSIIFCE Site 172
Y_lipolytica_3 ATSVLRPDLL I KNTVPVIMAG Site 172
Species Residue at Site 215
in 'msaprobs'
muscle

The residue for every species at site 215 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

B_fuckeliana_16 GGGVKAPRIR T KNLISIIFCE Site 172
C_immitis_11 NVGTFRPDLI M KSLVPVVMAG Site 172
A_mellifera_16 GGGVKAPRIK T KNLISVIFCE Site 172
A_gossypii_11 GIGTFRPELI M KSLIPVVMSG Site 172
T_annulata_16 GGSVKSPRIT V KNLVSVIFCE Site 172
N_vectensis_3 AMSVMRPELI M KSIIPVVMAG Site 172
S_Salar_16 GGGVKAPRIK T KNLVSIIFCE Site 172
L_elongisporus_16 GAGVKAPRIT T KNLISIIFCE Site 172
C_neoformans_16 GGGVRAPRIR T KNLISIIFCE Site 172
C_neoformans_11 GLGTFRPDLI M KSLIPVVMSG Site 172
P_knowlesi_16 GASVKSPRII S KNLISIIFCE Site 172
A_terreus_3 SMAVLRPDLI V KNIVPIVMAG Site 172
A_pisum_3 AMSVMRPELI M KSIIPVVMAG Site 172
S_Salar_3 AMSVMRPELI M KSIIPVVMAG Site 172
P_marneffei_3 GMAVLRPDLI V RNIVPIVMAG Site 172
P_stipitis_3 ATCVTRPDLL V KNVVPVVMAG Site 172
A_fumigatus_11 GVGTFRPDLI M KSLIPVVMSG Site 172
A_gossypii_3 ATCVLRPDLL F KNIVPVIMAG Site 172
C_hominis_3 SCGVMRPDLV M RSIIPAVMAG Site 172
C_muris_16 GASVKSPRIR S KNLISIIFCE Site 172
X_laevis_16 GGGVKAPRIK T KNLVSIIFCE Site 172
M_mulatta_3 AMSVMRPELI M KSIVPVVMAG Site 172
M_brevicollis_16 GGGVMAPRIK T KNLISIIFCE Site 172
K_lactis_3 ATCVLRPDLL F KNIVPVIMAG Site 172
T_castaneum_16 GGGVKAPRIK T KNLISVIFCE Site 172
Species Residue at Site 215
in 'msaprobs'
muscle

The residue for every species at site 215 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

C_intestinalis_16 GAGVITPRIY S KNLVSIIFCE Site 172
E_caballus_3 AMSVMRPELI M KSIIPVVMAG Site 172
C_globosum_3 AMGVLRPDLI V KNIVPVIMAG Site 172
A_clavatus_3 GMAVLRPDLI V KNIVPIVMAG Site 172
N_crassa_11 GVGTFRPDLI M KCLIPVVMSG Site 172
N_crassa_16 GGGVKAPRIR T KNLISIIFCE Site 172
X_tropicalis_16 GGGVKAPRIK T KNLVSIIFCE Site 172
P_anserina_11 GVGTFRPDLI M KCLIPVVMSG Site 172
P_vivax_16 GASVKSPRII S KNLISIIFCE Site 172
P_anserina_16 GGGVKAPRIR T KNLISIIFCE Site 172
H_sapiens_16 GGGVKAPRIK T KNLVSIIFCE Site 172
T_annulata_3 SMGVMRPDLV M KSIIPVIMAG Site 172
C_intestinalis_3 AMSVMRPELI M KSVVPVVMAG Site 172
L_elongisporus_11 GIGTFKPELI M KSLIPVVMSG Site 172
A_gossypii_16 GAGVRAPRIT T KNLISIIFCE Site 172
A_pisum_16 GGGVKAPRIK T KNLISVIFCE Site 172
N_crassa_3 AMGVLRPDLI V KNIVPVIMAG Site 172
V_polyspora_3 ATCVLRPDLL I KNVVPVVMAG Site 172
S_cerevisiae_3 ATCVLRPDLL F KNIVPVIMAG Site 172
P_marneffei_16 GGGVKAPRIR T KNLISIIFCE Site 172
D_hansenii_3 ATCVLRPDLL V KNIVPVIMAG Site 172
S_pombe_11 AVGAFRPEIV M KSLIPVVMSG Site 172
T_guttata_3 AMSVMRPELI M KSIIPVVMAG Site 172
S_pombe_16 GGAVKAPRIK T KNLISIIFCE Site 172
B_fuckeliana_3 AMGVLRPDLI V KNIVPVIMAG Site 172
Species Residue at Site 215
in 'msaprobs'
muscle

The residue for every species at site 215 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

T_adhaerens_16 GGGVKAPRIK T KNLVSIIFCE Site 172
S_cerevisiae_16 GAGVRAPRIT T KNLISIIFCE Site 172
R_norvegicus_3 AMSVMRPELI M KSIIPVVMAG Site 172
S_cerevisiae_11 GIGTFKPELI M KSLIPVVMSG Site 172
B_taurus_3 AMSVMRPEMI M KSIIPVVMAG Site 172
C_familiaris_3 AMSVMRPELI M KSIIPVVMAG Site 172
P_anserina_3 AMGVLRPDLI V KNIVPVIMAG Site 172
P_marneffei_11 GVGQYRPDLI M RSLIPVVMSG Site 172
P_knowlesi_3 SVGVMRPDLI M KSILPVVMAG Site 172
T_guttata_16 AGGVKAPRIK T KNLVSIIFCE Site 172
B_fuckeliana_11 GVGTFRPDLI M KSLIPVVMSG Site 172
C_cinerea_okayama_3 AMSVLRPDMM M KCSIPVVMAG Site 172
P_falciparum_16 GASVKSPRII S KNLISIIFCE Site 172
N_vectensis_16 GGGVKAPRIK A KNLVSIIFCE Site 172
A_niger_11 GVGTFRPDLI M KSLIPVVMSG Site 172
A_niger_16 GGGVKAPRIR T KNLISIIFCE Site 172
C_parvum_3 SMAVMRPDLI M RSIIPAVMAG Site 172
S_purpuratus_16 GGGVKAPRIR T KNLISIIFCE Site 172
B_floridae_3 AMSVMRPELI M KSILPVVMAG Site 172
Y_lipolytica_16 GAGVKAPRIT T KNLISIIFCE Site 172
A_mellifera_3 AMSVMRPELI M KSIIPVVMAG Site 172
A_clavatus_16 GGGVRAPRIR T KNLISIIFCE Site 172
A_clavatus_11 GVGTFRPDLI M KSLIPVVMSG Site 172
S_sclerotiorum_3 AMGVLRPDLI V KNIVPVIMAG Site 172
P_falciparum_3 SVGVMRPDLI M KSILPVVMAG Site 172
Species Residue at Site 215
in 'msaprobs'
muscle

The residue for every species at site 215 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

D_discoideum_16 GAAVKEPRIR S KNIISIIFCE Site 172
C_cinerea_okayama_11 GLGQFKPELI M KSLIPVVMSG Site 172
D_hansenii_16 GAGVKAPRIT T KNLISIIFCE Site 172
D_hansenii_11 GIGTFKPELI M KSLIPVVMSG Site 172
C_cinerea_okayama_16 ---------- - ---ACIIFCE  
P_vivax_3 SVGVMRPDLI M KSILPVVMAG Site 172
C_immitis_3 STAVLRPDLI V KNIVPIVMAG Site 172
G_zeae_11 GVGTFRPDLI M KCLIPVVMSG Site 172
C_neoformans_3 AMAVLRPDLM M KCAIPVVMAG Site 172
H_sapiens_3 AMSVMRPEQI M KSIIPVVMAG Site 172
G_zeae_16 GGGVKAPRIR T KNLISIIFCE Site 172
Y_lipolytica_11 GIGVFKPELI M KSLIPVVMSG Site 172
M_brevicollis_3 AMSVMRPELI M KSIIPVVMAG Site 172
D_discoideum_3 NMGVMKPDLV I KAFIPVIFAG Site 172
P_stipitis_16 GAGVKAPRIT T KNLISIIFCE Site 172
C_albicans_16 GAGVKAPRIT T KNLISIIFCE Site 172
C_albicans_11 GIGTFKPELI M KSLIPVVMSG Site 172
P_stipitis_11 GIGTFKPELI M KSLIPVVMSG Site 172
X_laevis_3 AMSVMRPELI M KSIIPVVMAG Site 172
C_glabrata_11 GIGTFKPELI M KSLIPVVMSG Site 172
E_caballus_16 GGGVKAPRIK T KNLVSIIFCE Site 172
C_glabrata_16 GAGVRAPRIT T KNLISIIFCE Site 172
V_polyspora_11 GIGTFKPELL M KSLIPVVMSG Site 172
V_polyspora_16 GAGVRAPRIT T KNLISIIFCE Site 172
C_hominis_16 GAALRSPRIR S KNLISVIFCE Site 172
Species Residue at Site 215
in 'msaprobs'
muscle

The residue for every species at site 215 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

C_globosum_11 GVGTFRPDLI M KCLIPVVMSG Site 172
C_globosum_16 GGGVKAPRIR T KNLISIIFCE Site 172
O_mordax_16 GGGVKAPRIK T KNLVSIIFCE Site 172
D_rerio_16 GGGVKAPRIK T KNLVSIIFCE Site 172
B_bovis_3 SMGVMRPDLV M RSIIPVIMAG Site 172
B_floridae_16 GGGVKAPRIR T KNLISIIFCE Site 172
M_musculus_3 AMSVMRPELI M KSIIPVVMAG Site 172
A_fumigatus_16 GGGVKAPRIR T KNLISIIFCE Site 172
C_familiaris_16 GGGVKAPRIK T KNLVSIIFCE Site 172
K_lactis_11 GIGTFKPELI M KSLIPVVMSG Site 172
K_lactis_16 GAGVRAPRIT T KNLISIIFCE Site 172
B_taurus_16 GGGVKAPRIK T KNLVSIIFCE Site 172
S_sclerotiorum_16 GGGVKAPRIR T KNLISIIFCE Site 172
S_sclerotiorum_11 GVGTFRPDLI M KSLIPVVMSG Site 172
R_norvegicus_16 GGGVKAPRIK T KNLVSIIFCE Site 172

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