V-ATPase Ancestral Library

If you use these results in your work, please cite: Hanson-Smith and Johnson, PLoS Comp. Bio., 2016


Overview | Alignments | Sites | Trees | Ancestors | Mutations


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Select a Site:

Site 214 in Alignment 'msaprobs'


Similarity to Other Alignments

What percentage of the residues at this site are inferred to be a single site (i.e. homologous) in the alignments produced by other methods? A value of 100% indicates that the existence of site 214 is robust across multiple methods. Values less than 100% indicate that other alignment methods made different homology inferences.

Similarity of Site 214 in 'msaprobs'
to Sites in 'muscle'

What percentage of the residues at this site in msaprobs are inferred to be a single site (i.e. homologous) in the alignments produced by muscle? A value of 100% indicates that the existence of site 214 is reproduced using the muscle method. Values less than 100% indicate that muscle made different homology inferences for the residues at this site.


Species Residue at Site 214
in 'msaprobs'
muscle

The residue for every species at site 214 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

M_musculus_16 IGGGVKAPRI K TKNLVSIIFC Site 171
O_mordax_3 AAMSVMRPEL I MKSIIPVVMA Site 171
D_rerio_3 AAMSVMRPEL I MKSIIPVVMA Site 171
M_grisea_16 LGGGVKAPRI R TKNLISIIFC Site 171
M_grisea_11 AGVGTFRPDL I MKCLIPVIMS Site 171
A_niger_3 CGMAVLRPDL I VKNIVPIVMA Site 171
C_glabrata_3 CVTCVLRPDL L IKSIVPIVMA Site 171
A_terreus_11 SGVGTFRPDL I MKSLIPVVMS Site 171
A_terreus_16 VAGGVKAPRI R TKNLISIIFC Site 171
C_parvum_16 VGAALRSPRI R SKNLISVIFC Site 171
T_adhaerens_3 AAMSVMRPEL I MKSIIPVVMA Site 171
T_castaneum_3 AAMSVMRPEL I MKSIIPVVMA Site 171
X_tropicalis_3 AAMSVMRPEL I MKSIIPVVMA Site 171
G_zeae_3 AAMGVLRPDL I VKNIVPVIMA Site 171
L_elongisporus_3 CATSVTRPDL L VKNVVPVVMA Site 171
A_fumigatus_3 CGMAVLRPDL I VKNIVPIVMA Site 171
M_grisea_3 AAMGVLRPDL I VKNIVPVIMA Site 171
S_pombe_3 SAMGVLRPDL I VKNTIPVVMA Site 171
C_albicans_3 AGIGTFKPEL I MKSLIPVVMS Site 171
B_bovis_16 MGGSVNSPRI T VKNLVSVIFC Site 171
C_muris_3 SSMGVMRPEL I MKSIIPAVMA Site 171
S_purpuratus_3 AAMSVMRPEL I MKSIIPVVMA Site 171
C_immitis_16 IGGGVKAPRI R TKNLISIIFC Site 171
M_mulatta_16 IGGGVKAPRI K TKNLVSIIFC Site 171
Y_lipolytica_3 CATSVLRPDL L IKNTVPVIMA Site 171
Species Residue at Site 214
in 'msaprobs'
muscle

The residue for every species at site 214 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

B_fuckeliana_16 LGGGVKAPRI R TKNLISIIFC Site 171
C_immitis_11 ANVGTFRPDL I MKSLVPVVMA Site 171
A_mellifera_16 IGGGVKAPRI K TKNLISVIFC Site 171
A_gossypii_11 SGIGTFRPEL I MKSLIPVVMS Site 171
T_annulata_16 MGGSVKSPRI T VKNLVSVIFC Site 171
N_vectensis_3 AAMSVMRPEL I MKSIIPVVMA Site 171
S_Salar_16 IGGGVKAPRI K TKNLVSIIFC Site 171
L_elongisporus_16 IGAGVKAPRI T TKNLISIIFC Site 171
C_neoformans_16 LGGGVRAPRI R TKNLISIIFC Site 171
C_neoformans_11 AGLGTFRPDL I MKSLIPVVMS Site 171
P_knowlesi_16 VGASVKSPRI I SKNLISIIFC Site 171
A_terreus_3 CSMAVLRPDL I VKNIVPIVMA Site 171
A_pisum_3 AAMSVMRPEL I MKSIIPVVMA Site 171
S_Salar_3 AAMSVMRPEL I MKSIIPVVMA Site 171
P_marneffei_3 CGMAVLRPDL I VRNIVPIVMA Site 171
P_stipitis_3 CATCVTRPDL L VKNVVPVVMA Site 171
A_fumigatus_11 SGVGTFRPDL I MKSLIPVVMS Site 171
A_gossypii_3 CATCVLRPDL L FKNIVPVIMA Site 171
C_hominis_3 ASCGVMRPDL V MRSIIPAVMA Site 171
C_muris_16 VGASVKSPRI R SKNLISIIFC Site 171
X_laevis_16 LGGGVKAPRI K TKNLVSIIFC Site 171
M_mulatta_3 AAMSVMRPEL I MKSIVPVVMA Site 171
M_brevicollis_16 LGGGVMAPRI K TKNLISIIFC Site 171
K_lactis_3 CATCVLRPDL L FKNIVPVIMA Site 171
T_castaneum_16 IGGGVKAPRI K TKNLISVIFC Site 171
Species Residue at Site 214
in 'msaprobs'
muscle

The residue for every species at site 214 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

C_intestinalis_16 MGAGVITPRI Y SKNLVSIIFC Site 171
E_caballus_3 AAMSVMRPEL I MKSIIPVVMA Site 171
C_globosum_3 AAMGVLRPDL I VKNIVPVIMA Site 171
A_clavatus_3 CGMAVLRPDL I VKNIVPIVMA Site 171
N_crassa_11 AGVGTFRPDL I MKCLIPVVMS Site 171
N_crassa_16 LGGGVKAPRI R TKNLISIIFC Site 171
X_tropicalis_16 LGGGVKAPRI K TKNLVSIIFC Site 171
P_anserina_11 AGVGTFRPDL I MKCLIPVVMS Site 171
P_vivax_16 VGASVKSPRI I SKNLISIIFC Site 171
P_anserina_16 LGGGVKAPRI R TKNLISIIFC Site 171
H_sapiens_16 IGGGVKAPRI K TKNLVSIIFC Site 171
T_annulata_3 SSMGVMRPDL V MKSIIPVIMA Site 171
C_intestinalis_3 AAMSVMRPEL I MKSVVPVVMA Site 171
L_elongisporus_11 AGIGTFKPEL I MKSLIPVVMS Site 171
A_gossypii_16 IGAGVRAPRI T TKNLISIIFC Site 171
A_pisum_16 VGGGVKAPRI K TKNLISVIFC Site 171
N_crassa_3 AAMGVLRPDL I VKNIVPVIMA Site 171
V_polyspora_3 CATCVLRPDL L IKNVVPVVMA Site 171
S_cerevisiae_3 CATCVLRPDL L FKNIVPVIMA Site 171
P_marneffei_16 LGGGVKAPRI R TKNLISIIFC Site 171
D_hansenii_3 CATCVLRPDL L VKNIVPVIMA Site 171
S_pombe_11 AAVGAFRPEI V MKSLIPVVMS Site 171
T_guttata_3 AAMSVMRPEL I MKSIIPVVMA Site 171
S_pombe_16 LGGAVKAPRI K TKNLISIIFC Site 171
B_fuckeliana_3 CAMGVLRPDL I VKNIVPVIMA Site 171
Species Residue at Site 214
in 'msaprobs'
muscle

The residue for every species at site 214 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

T_adhaerens_16 VGGGVKAPRI K TKNLVSIIFC Site 171
S_cerevisiae_16 IGAGVRAPRI T TKNLISIIFC Site 171
R_norvegicus_3 AAMSVMRPEL I MKSIIPVVMA Site 171
S_cerevisiae_11 AGIGTFKPEL I MKSLIPVVMS Site 171
B_taurus_3 AAMSVMRPEM I MKSIIPVVMA Site 171
C_familiaris_3 AAMSVMRPEL I MKSIIPVVMA Site 171
P_anserina_3 AAMGVLRPDL I VKNIVPVIMA Site 171
P_marneffei_11 AGVGQYRPDL I MRSLIPVVMS Site 171
P_knowlesi_3 CSVGVMRPDL I MKSILPVVMA Site 171
T_guttata_16 IAGGVKAPRI K TKNLVSIIFC Site 171
B_fuckeliana_11 AGVGTFRPDL I MKSLIPVVMS Site 171
C_cinerea_okayama_3 SAMSVLRPDM M MKCSIPVVMA Site 171
P_falciparum_16 VGASVKSPRI I SKNLISIIFC Site 171
N_vectensis_16 CGGGVKAPRI K AKNLVSIIFC Site 171
A_niger_11 SGVGTFRPDL I MKSLIPVVMS Site 171
A_niger_16 VGGGVKAPRI R TKNLISIIFC Site 171
C_parvum_3 SSMAVMRPDL I MRSIIPAVMA Site 171
S_purpuratus_16 VGGGVKAPRI R TKNLISIIFC Site 171
B_floridae_3 AAMSVMRPEL I MKSILPVVMA Site 171
Y_lipolytica_16 IGAGVKAPRI T TKNLISIIFC Site 171
A_mellifera_3 AAMSVMRPEL I MKSIIPVVMA Site 171
A_clavatus_16 VGGGVRAPRI R TKNLISIIFC Site 171
A_clavatus_11 SGVGTFRPDL I MKSLIPVVMS Site 171
S_sclerotiorum_3 CAMGVLRPDL I VKNIVPVIMA Site 171
P_falciparum_3 CSVGVMRPDL I MKSILPVVMA Site 171
Species Residue at Site 214
in 'msaprobs'
muscle

The residue for every species at site 214 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

D_discoideum_16 MGAAVKEPRI R SKNIISIIFC Site 171
C_cinerea_okayama_11 AGLGQFKPEL I MKSLIPVVMS Site 171
D_hansenii_16 IGAGVKAPRI T TKNLISIIFC Site 171
D_hansenii_11 SGIGTFKPEL I MKSLIPVVMS Site 171
C_cinerea_okayama_16 ---------- - ----ACIIFC  
P_vivax_3 CSVGVMRPDL I MKSILPVVMA Site 171
C_immitis_3 CSTAVLRPDL I VKNIVPIVMA Site 171
G_zeae_11 AGVGTFRPDL I MKCLIPVVMS Site 171
C_neoformans_3 SAMAVLRPDL M MKCAIPVVMA Site 171
H_sapiens_3 AAMSVMRPEQ I MKSIIPVVMA Site 171
G_zeae_16 LGGGVKAPRI R TKNLISIIFC Site 171
Y_lipolytica_11 AGIGVFKPEL I MKSLIPVVMS Site 171
M_brevicollis_3 AAMSVMRPEL I MKSIIPVVMA Site 171
D_discoideum_3 SNMGVMKPDL V IKAFIPVIFA Site 171
P_stipitis_16 LGAGVKAPRI T TKNLISIIFC Site 171
C_albicans_16 LGAGVKAPRI T TKNLISIIFC Site 171
C_albicans_11 AGIGTFKPEL I MKSLIPVVMS Site 171
P_stipitis_11 AGIGTFKPEL I MKSLIPVVMS Site 171
X_laevis_3 AAMSVMRPEL I MKSIIPVVMA Site 171
C_glabrata_11 AGIGTFKPEL I MKSLIPVVMS Site 171
E_caballus_16 IGGGVKAPRI K TKNLVSIIFC Site 171
C_glabrata_16 IGAGVRAPRI T TKNLISIIFC Site 171
V_polyspora_11 AGIGTFKPEL L MKSLIPVVMS Site 171
V_polyspora_16 IGAGVRAPRI T TKNLISIIFC Site 171
C_hominis_16 VGAALRSPRI R SKNLISVIFC Site 171
Species Residue at Site 214
in 'msaprobs'
muscle

The residue for every species at site 214 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

C_globosum_11 AGVGTFRPDL I MKCLIPVVMS Site 171
C_globosum_16 LGGGVKAPRI R TKNLISIIFC Site 171
O_mordax_16 IGGGVKAPRI K TKNLVSIIFC Site 171
D_rerio_16 IGGGVKAPRI K TKNLVSIIFC Site 171
B_bovis_3 SSMGVMRPDL V MRSIIPVIMA Site 171
B_floridae_16 IGGGVKAPRI R TKNLISIIFC Site 171
M_musculus_3 AAMSVMRPEL I MKSIIPVVMA Site 171
A_fumigatus_16 VGGGVKAPRI R TKNLISIIFC Site 171
C_familiaris_16 IGGGVKAPRI K TKNLVSIIFC Site 171
K_lactis_11 SGIGTFKPEL I MKSLIPVVMS Site 171
K_lactis_16 IGAGVRAPRI T TKNLISIIFC Site 171
B_taurus_16 IGGGVKAPRI K TKNLVSIIFC Site 171
S_sclerotiorum_16 LGGGVKAPRI R TKNLISIIFC Site 171
S_sclerotiorum_11 AGVGTFRPDL I MKSLIPVVMS Site 171
R_norvegicus_16 IGGGVKAPRI K TKNLVSIIFC Site 171

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