V-ATPase Ancestral Library

If you use these results in your work, please cite: Hanson-Smith and Johnson, PLoS Comp. Bio., 2016


Overview | Alignments | Sites | Trees | Ancestors | Mutations


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Select a Site:

Site 211 in Alignment 'msaprobs'


Similarity to Other Alignments

What percentage of the residues at this site are inferred to be a single site (i.e. homologous) in the alignments produced by other methods? A value of 100% indicates that the existence of site 211 is robust across multiple methods. Values less than 100% indicate that other alignment methods made different homology inferences.

Similarity of Site 211 in 'msaprobs'
to Sites in 'muscle'

What percentage of the residues at this site in msaprobs are inferred to be a single site (i.e. homologous) in the alignments produced by muscle? A value of 100% indicates that the existence of site 211 is reproduced using the muscle method. Values less than 100% indicate that muscle made different homology inferences for the residues at this site.


Species Residue at Site 211
in 'msaprobs'
muscle

The residue for every species at site 211 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

M_musculus_16 SSIIGGGVKA P RIKTKNLVSI Site 168
O_mordax_3 TGIAAMSVMR P ELIMKSIIPV Site 168
D_rerio_3 TDIAAMSVMR P ELIMKSIIPV Site 168
M_grisea_16 SSILGGGVKA P RIRTKNLISI Site 168
M_grisea_11 IGIAGVGTFR P DLIMKCLIPV Site 168
A_niger_3 VGVCGMAVLR P DLIVKNIVPI Site 168
C_glabrata_3 VGVCVTCVLR P DLLIKSIVPI Site 168
A_terreus_11 IGISGVGTFR P DLIMKSLIPV Site 168
A_terreus_16 SSIVAGGVKA P RIRTKNLISI Site 168
C_parvum_16 NSLVGAALRS P RIRSKNLISV Site 168
T_adhaerens_3 TGIAAMSVMR P ELIMKSIIPV Site 168
T_castaneum_3 TGIAAMSVMR P ELIMKSIIPV Site 168
X_tropicalis_3 TGIAAMSVMR P ELIMKSIIPV Site 168
G_zeae_3 VGIAAMGVLR P DLIVKNIVPV Site 168
L_elongisporus_3 VGICATSVTR P DLLVKNVVPV Site 168
A_fumigatus_3 VGVCGMAVLR P DLIVKNIVPI Site 168
M_grisea_3 VGIAAMGVLR P DLIVKNIVPV Site 168
S_pombe_3 VGISAMGVLR P DLIVKNTIPV Site 168
C_albicans_3 IGIAGIGTFK P ELIMKSLIPV Site 168
B_bovis_16 TSIMGGSVNS P RITVKNLVSV Site 168
C_muris_3 VGISSMGVMR P ELIMKSIIPA Site 168
S_purpuratus_3 TGVAAMSVMR P ELIMKSIIPV Site 168
C_immitis_16 SSIIGGGVKA P RIRTKNLISI Site 168
M_mulatta_16 SSIIGGGVKA P RIKTKNLVSI Site 168
Y_lipolytica_3 VGICATSVLR P DLLIKNTVPV Site 168
Species Residue at Site 211
in 'msaprobs'
muscle

The residue for every species at site 211 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

B_fuckeliana_16 SSILGGGVKA P RIRTKNLISI Site 168
C_immitis_11 IGIANVGTFR P DLIMKSLVPV Site 168
A_mellifera_16 VSIIGGGVKA P RIKTKNLISV Site 168
A_gossypii_11 IGISGIGTFR P ELIMKSLIPV Site 168
T_annulata_16 PSIMGGSVKS P RITVKNLVSV Site 168
N_vectensis_3 TGIAAMSVMR P ELIMKSIIPV Site 168
S_Salar_16 SSIIGGGVKA P RIKTKNLVSI Site 168
L_elongisporus_16 TSIIGAGVKA P RITTKNLISI Site 168
C_neoformans_16 ASILGGGVRA P RIRTKNLISI Site 168
C_neoformans_11 IGIAGLGTFR P DLIMKSLIPV Site 168
P_knowlesi_16 TSIVGASVKS P RIISKNLISI Site 168
A_terreus_3 VGVCSMAVLR P DLIVKNIVPI Site 168
A_pisum_3 TGIAAMSVMR P ELIMKSIIPV Site 168
S_Salar_3 TGIAAMSVMR P ELIMKSIIPV Site 168
P_marneffei_3 VGVCGMAVLR P DLIVRNIVPI Site 168
P_stipitis_3 VGICATCVTR P DLLVKNVVPV Site 168
A_fumigatus_11 IGISGVGTFR P DLIMKSLIPV Site 168
A_gossypii_3 VSICATCVLR P DLLFKNIVPV Site 168
C_hominis_3 LAIASCGVMR P DLVMRSIIPA Site 168
C_muris_16 SSLVGASVKS P RIRSKNLISI Site 168
X_laevis_16 SSILGGGVKA P RIKTKNLVSI Site 168
M_mulatta_3 AGIAAMSVMR P ELIMKSIVPV Site 168
M_brevicollis_16 ASILGGGVMA P RIKTKNLISI Site 168
K_lactis_3 VGICATCVLR P DLLFKNIVPV Site 168
T_castaneum_16 VSIIGGGVKA P RIKTKNLISV Site 168
Species Residue at Site 211
in 'msaprobs'
muscle

The residue for every species at site 211 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

C_intestinalis_16 SSIMGAGVIT P RIYSKNLVSI Site 168
E_caballus_3 TGIAAMSVMR P ELIMKSIIPV Site 168
C_globosum_3 VGIAAMGVLR P DLIVKNIVPV Site 168
A_clavatus_3 VGVCGMAVLR P DLIVKNIVPI Site 168
N_crassa_11 IGIAGVGTFR P DLIMKCLIPV Site 168
N_crassa_16 SSILGGGVKA P RIRTKNLISI Site 168
X_tropicalis_16 SSILGGGVKA P RIKTKNLVSI Site 168
P_anserina_11 IGIAGVGTFR P DLIMKCLIPV Site 168
P_vivax_16 TSIVGASVKS P RIISKNLISI Site 168
P_anserina_16 SSILGGGVKA P RIRTKNLISI Site 168
H_sapiens_16 SSIIGGGVKA P RIKTKNLVSI Site 168
T_annulata_3 VGISSMGVMR P DLVMKSIIPV Site 168
C_intestinalis_3 TGIAAMSVMR P ELIMKSVVPV Site 168
L_elongisporus_11 IGIAGIGTFK P ELIMKSLIPV Site 168
A_gossypii_16 ASIIGAGVRA P RITTKNLISI Site 168
A_pisum_16 VSIVGGGVKA P RIKTKNLISV Site 168
N_crassa_3 VGIAAMGVLR P DLIVKNIVPV Site 168
V_polyspora_3 VGICATCVLR P DLLIKNVVPV Site 168
S_cerevisiae_3 VGICATCVLR P DLLFKNIVPV Site 168
P_marneffei_16 SSILGGGVKA P RIRTKNLISI Site 168
D_hansenii_3 VGICATCVLR P DLLVKNIVPV Site 168
S_pombe_11 RGIAAVGAFR P EIVMKSLIPV Site 168
T_guttata_3 TGIAAMSVMR P ELIMKSIIPV Site 168
S_pombe_16 TSILGGAVKA P RIKTKNLISI Site 168
B_fuckeliana_3 VGICAMGVLR P DLIVKNIVPV Site 168
Species Residue at Site 211
in 'msaprobs'
muscle

The residue for every species at site 211 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

T_adhaerens_16 SSIVGGGVKA P RIKTKNLVSI Site 168
S_cerevisiae_16 SSMIGAGVRA P RITTKNLISI Site 168
R_norvegicus_3 TGIAAMSVMR P ELIMKSIIPV Site 168
S_cerevisiae_11 IGIAGIGTFK P ELIMKSLIPV Site 168
B_taurus_3 TGIAAMSVMR P EMIMKSIIPV Site 168
C_familiaris_3 TGIAAMSVMR P ELIMKSIIPV Site 168
P_anserina_3 VGIAAMGVLR P DLIVKNIVPV Site 168
P_marneffei_11 IGIAGVGQYR P DLIMRSLIPV Site 168
P_knowlesi_3 VGVCSVGVMR P DLIMKSILPV Site 168
T_guttata_16 STIIAGGVKA P RIKTKNLVSI Site 168
B_fuckeliana_11 IGIAGVGTFR P DLIMKSLIPV Site 168
C_cinerea_okayama_3 VGISAMSVLR P DMMMKCSIPV Site 168
P_falciparum_16 TSIVGASVKS P RIISKNLISI Site 168
N_vectensis_16 ASICGGGVKA P RIKAKNLVSI Site 168
A_niger_11 IGISGVGTFR P DLIMKSLIPV Site 168
A_niger_16 SSIVGGGVKA P RIRTKNLISI Site 168
C_parvum_3 VGISSMAVMR P DLIMRSIIPA Site 168
S_purpuratus_16 TSIVGGGVKA P RIRTKNLISI Site 168
B_floridae_3 MGIAAMSVMR P ELIMKSILPV Site 168
Y_lipolytica_16 STIIGAGVKA P RITTKNLISI Site 168
A_mellifera_3 TGIAAMSVMR P ELIMKSIIPV Site 168
A_clavatus_16 SSIVGGGVRA P RIRTKNLISI Site 168
A_clavatus_11 IGISGVGTFR P DLIMKSLIPV Site 168
S_sclerotiorum_3 VGICAMGVLR P DLIVKNIVPV Site 168
P_falciparum_3 VGVCSVGVMR P DLIMKSILPV Site 168
Species Residue at Site 211
in 'msaprobs'
muscle

The residue for every species at site 211 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

D_discoideum_16 SSLMGAAVKE P RIRSKNIISI Site 168
C_cinerea_okayama_11 IGIAGLGQFK P ELIMKSLIPV Site 168
D_hansenii_16 SSIIGAGVKA P RITTKNLISI Site 168
D_hansenii_11 IGISGIGTFK P ELIMKSLIPV Site 168
C_cinerea_okayama_16 ---------- - -------ACI  
P_vivax_3 VGVCSVGVMR P DLIMKSILPV Site 168
C_immitis_3 VGVCSTAVLR P DLIVKNIVPI Site 168
G_zeae_11 IGIAGVGTFR P DLIMKCLIPV Site 168
C_neoformans_3 VGISAMAVLR P DLMMKCAIPV Site 168
H_sapiens_3 TGIAAMSVMR P EQIMKSIIPV Site 168
G_zeae_16 SSILGGGVKA P RIRTKNLISI Site 168
Y_lipolytica_11 IGIAGIGVFK P ELIMKSLIPV Site 168
M_brevicollis_3 TGIAAMSVMR P ELIMKSIIPV Site 168
D_discoideum_3 VGISNMGVMK P DLVIKAFIPV Site 168
P_stipitis_16 STILGAGVKA P RITTKNLISI Site 168
C_albicans_16 TSILGAGVKA P RITTKNLISI Site 168
C_albicans_11 IGIAGIGTFK P ELIMKSLIPV Site 168
P_stipitis_11 VGIAGIGTFK P ELIMKSLIPV Site 168
X_laevis_3 TGIAAMSVMR P ELIMKSIIPV Site 168
C_glabrata_11 IGIAGIGTFK P ELIMKSLIPV Site 168
E_caballus_16 SSIIGGGVKA P RIKTKNLVSI Site 168
C_glabrata_16 SSMIGAGVRA P RITTKNLISI Site 168
V_polyspora_11 IGIAGIGTFK P ELLMKSLIPV Site 168
V_polyspora_16 SSIIGAGVRA P RITTKNLISI Site 168
C_hominis_16 NSLVGAALRS P RIRSKNLISV Site 168
Species Residue at Site 211
in 'msaprobs'
muscle

The residue for every species at site 211 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

C_globosum_11 IGIAGVGTFR P DLIMKCLIPV Site 168
C_globosum_16 SSILGGGVKA P RIRTKNLISI Site 168
O_mordax_16 SSIIGGGVKA P RIKTKNLVSI Site 168
D_rerio_16 SSIIGGGVKA P RIKTKNLVSI Site 168
B_bovis_3 VGISSMGVMR P DLVMRSIIPV Site 168
B_floridae_16 SSIIGGGVKA P RIRTKNLISI Site 168
M_musculus_3 TGIAAMSVMR P ELIMKSIIPV Site 168
A_fumigatus_16 SSIVGGGVKA P RIRTKNLISI Site 168
C_familiaris_16 SSIIGGGVKA P RIKTKNLVSI Site 168
K_lactis_11 IGISGIGTFK P ELIMKSLIPV Site 168
K_lactis_16 SSIIGAGVRA P RITTKNLISI Site 168
B_taurus_16 SSIIGGGVKA P RIKTKNLVSI Site 168
S_sclerotiorum_16 SSILGGGVKA P RIRTKNLISI Site 168
S_sclerotiorum_11 IGIAGVGTFR P DLIMKSLIPV Site 168
R_norvegicus_16 SSIIGGGVKA P RIKTKNLVSI Site 168

Generated by PhyloBot at 15:44, October 30th 2020
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