V-ATPase Ancestral Library

If you use these results in your work, please cite: Hanson-Smith and Johnson, PLoS Comp. Bio., 2016


Overview | Alignments | Sites | Trees | Ancestors | Mutations


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Select a Site:

Site 210 in Alignment 'msaprobs'


Similarity to Other Alignments

What percentage of the residues at this site are inferred to be a single site (i.e. homologous) in the alignments produced by other methods? A value of 100% indicates that the existence of site 210 is robust across multiple methods. Values less than 100% indicate that other alignment methods made different homology inferences.

Similarity of Site 210 in 'msaprobs'
to Sites in 'muscle'

What percentage of the residues at this site in msaprobs are inferred to be a single site (i.e. homologous) in the alignments produced by muscle? A value of 100% indicates that the existence of site 210 is reproduced using the muscle method. Values less than 100% indicate that muscle made different homology inferences for the residues at this site.


Species Residue at Site 210
in 'msaprobs'
muscle

The residue for every species at site 210 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

M_musculus_16 GSSIIGGGVK A PRIKTKNLVS Site 167
O_mordax_3 GTGIAAMSVM R PELIMKSIIP Site 167
D_rerio_3 GTDIAAMSVM R PELIMKSIIP Site 167
M_grisea_16 GSSILGGGVK A PRIRTKNLIS Site 167
M_grisea_11 GIGIAGVGTF R PDLIMKCLIP Site 167
A_niger_3 GVGVCGMAVL R PDLIVKNIVP Site 167
C_glabrata_3 GVGVCVTCVL R PDLLIKSIVP Site 167
A_terreus_11 GIGISGVGTF R PDLIMKSLIP Site 167
A_terreus_16 GSSIVAGGVK A PRIRTKNLIS Site 167
C_parvum_16 GNSLVGAALR S PRIRSKNLIS Site 167
T_adhaerens_3 GTGIAAMSVM R PELIMKSIIP Site 167
T_castaneum_3 GTGIAAMSVM R PELIMKSIIP Site 167
X_tropicalis_3 GTGIAAMSVM R PELIMKSIIP Site 167
G_zeae_3 GVGIAAMGVL R PDLIVKNIVP Site 167
L_elongisporus_3 GVGICATSVT R PDLLVKNVVP Site 167
A_fumigatus_3 GVGVCGMAVL R PDLIVKNIVP Site 167
M_grisea_3 GVGIAAMGVL R PDLIVKNIVP Site 167
S_pombe_3 GVGISAMGVL R PDLIVKNTIP Site 167
C_albicans_3 GIGIAGIGTF K PELIMKSLIP Site 167
B_bovis_16 GTSIMGGSVN S PRITVKNLVS Site 167
C_muris_3 GVGISSMGVM R PELIMKSIIP Site 167
S_purpuratus_3 GTGVAAMSVM R PELIMKSIIP Site 167
C_immitis_16 GSSIIGGGVK A PRIRTKNLIS Site 167
M_mulatta_16 GSSIIGGGVK A PRIKTKNLVS Site 167
Y_lipolytica_3 GVGICATSVL R PDLLIKNTVP Site 167
Species Residue at Site 210
in 'msaprobs'
muscle

The residue for every species at site 210 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

B_fuckeliana_16 GSSILGGGVK A PRIRTKNLIS Site 167
C_immitis_11 GIGIANVGTF R PDLIMKSLVP Site 167
A_mellifera_16 GVSIIGGGVK A PRIKTKNLIS Site 167
A_gossypii_11 GIGISGIGTF R PELIMKSLIP Site 167
T_annulata_16 GPSIMGGSVK S PRITVKNLVS Site 167
N_vectensis_3 GTGIAAMSVM R PELIMKSIIP Site 167
S_Salar_16 GSSIIGGGVK A PRIKTKNLVS Site 167
L_elongisporus_16 GTSIIGAGVK A PRITTKNLIS Site 167
C_neoformans_16 GASILGGGVR A PRIRTKNLIS Site 167
C_neoformans_11 GIGIAGLGTF R PDLIMKSLIP Site 167
P_knowlesi_16 GTSIVGASVK S PRIISKNLIS Site 167
A_terreus_3 GVGVCSMAVL R PDLIVKNIVP Site 167
A_pisum_3 GTGIAAMSVM R PELIMKSIIP Site 167
S_Salar_3 GTGIAAMSVM R PELIMKSIIP Site 167
P_marneffei_3 GVGVCGMAVL R PDLIVRNIVP Site 167
P_stipitis_3 GVGICATCVT R PDLLVKNVVP Site 167
A_fumigatus_11 GIGISGVGTF R PDLIMKSLIP Site 167
A_gossypii_3 GVSICATCVL R PDLLFKNIVP Site 167
C_hominis_3 GLAIASCGVM R PDLVMRSIIP Site 167
C_muris_16 GSSLVGASVK S PRIRSKNLIS Site 167
X_laevis_16 GSSILGGGVK A PRIKTKNLVS Site 167
M_mulatta_3 RAGIAAMSVM R PELIMKSIVP Site 167
M_brevicollis_16 GASILGGGVM A PRIKTKNLIS Site 167
K_lactis_3 GVGICATCVL R PDLLFKNIVP Site 167
T_castaneum_16 GVSIIGGGVK A PRIKTKNLIS Site 167
Species Residue at Site 210
in 'msaprobs'
muscle

The residue for every species at site 210 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

C_intestinalis_16 GSSIMGAGVI T PRIYSKNLVS Site 167
E_caballus_3 GTGIAAMSVM R PELIMKSIIP Site 167
C_globosum_3 GVGIAAMGVL R PDLIVKNIVP Site 167
A_clavatus_3 GVGVCGMAVL R PDLIVKNIVP Site 167
N_crassa_11 GIGIAGVGTF R PDLIMKCLIP Site 167
N_crassa_16 GSSILGGGVK A PRIRTKNLIS Site 167
X_tropicalis_16 GSSILGGGVK A PRIKTKNLVS Site 167
P_anserina_11 GIGIAGVGTF R PDLIMKCLIP Site 167
P_vivax_16 GTSIVGASVK S PRIISKNLIS Site 167
P_anserina_16 GSSILGGGVK A PRIRTKNLIS Site 167
H_sapiens_16 GSSIIGGGVK A PRIKTKNLVS Site 167
T_annulata_3 GVGISSMGVM R PDLVMKSIIP Site 167
C_intestinalis_3 GTGIAAMSVM R PELIMKSVVP Site 167
L_elongisporus_11 GIGIAGIGTF K PELIMKSLIP Site 167
A_gossypii_16 GASIIGAGVR A PRITTKNLIS Site 167
A_pisum_16 GVSIVGGGVK A PRIKTKNLIS Site 167
N_crassa_3 GVGIAAMGVL R PDLIVKNIVP Site 167
V_polyspora_3 GVGICATCVL R PDLLIKNVVP Site 167
S_cerevisiae_3 GVGICATCVL R PDLLFKNIVP Site 167
P_marneffei_16 GSSILGGGVK A PRIRTKNLIS Site 167
D_hansenii_3 GVGICATCVL R PDLLVKNIVP Site 167
S_pombe_11 GRGIAAVGAF R PEIVMKSLIP Site 167
T_guttata_3 GTGIAAMSVM R PELIMKSIIP Site 167
S_pombe_16 GTSILGGAVK A PRIKTKNLIS Site 167
B_fuckeliana_3 GVGICAMGVL R PDLIVKNIVP Site 167
Species Residue at Site 210
in 'msaprobs'
muscle

The residue for every species at site 210 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

T_adhaerens_16 GSSIVGGGVK A PRIKTKNLVS Site 167
S_cerevisiae_16 GSSMIGAGVR A PRITTKNLIS Site 167
R_norvegicus_3 GTGIAAMSVM R PELIMKSIIP Site 167
S_cerevisiae_11 GIGIAGIGTF K PELIMKSLIP Site 167
B_taurus_3 GTGIAAMSVM R PEMIMKSIIP Site 167
C_familiaris_3 GTGIAAMSVM R PELIMKSIIP Site 167
P_anserina_3 GVGIAAMGVL R PDLIVKNIVP Site 167
P_marneffei_11 GIGIAGVGQY R PDLIMRSLIP Site 167
P_knowlesi_3 GVGVCSVGVM R PDLIMKSILP Site 167
T_guttata_16 GSTIIAGGVK A PRIKTKNLVS Site 167
B_fuckeliana_11 GIGIAGVGTF R PDLIMKSLIP Site 167
C_cinerea_okayama_3 GVGISAMSVL R PDMMMKCSIP Site 167
P_falciparum_16 GTSIVGASVK S PRIISKNLIS Site 167
N_vectensis_16 GASICGGGVK A PRIKAKNLVS Site 167
A_niger_11 GIGISGVGTF R PDLIMKSLIP Site 167
A_niger_16 GSSIVGGGVK A PRIRTKNLIS Site 167
C_parvum_3 GVGISSMAVM R PDLIMRSIIP Site 167
S_purpuratus_16 GTSIVGGGVK A PRIRTKNLIS Site 167
B_floridae_3 GMGIAAMSVM R PELIMKSILP Site 167
Y_lipolytica_16 GSTIIGAGVK A PRITTKNLIS Site 167
A_mellifera_3 GTGIAAMSVM R PELIMKSIIP Site 167
A_clavatus_16 GSSIVGGGVR A PRIRTKNLIS Site 167
A_clavatus_11 GIGISGVGTF R PDLIMKSLIP Site 167
S_sclerotiorum_3 GVGICAMGVL R PDLIVKNIVP Site 167
P_falciparum_3 GVGVCSVGVM R PDLIMKSILP Site 167
Species Residue at Site 210
in 'msaprobs'
muscle

The residue for every species at site 210 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

D_discoideum_16 ASSLMGAAVK E PRIRSKNIIS Site 167
C_cinerea_okayama_11 GIGIAGLGQF K PELIMKSLIP Site 167
D_hansenii_16 GSSIIGAGVK A PRITTKNLIS Site 167
D_hansenii_11 GIGISGIGTF K PELIMKSLIP Site 167
C_cinerea_okayama_16 ---------- - --------AC  
P_vivax_3 GVGVCSVGVM R PDLIMKSILP Site 167
C_immitis_3 GVGVCSTAVL R PDLIVKNIVP Site 167
G_zeae_11 GIGIAGVGTF R PDLIMKCLIP Site 167
C_neoformans_3 GVGISAMAVL R PDLMMKCAIP Site 167
H_sapiens_3 GTGIAAMSVM R PEQIMKSIIP Site 167
G_zeae_16 GSSILGGGVK A PRIRTKNLIS Site 167
Y_lipolytica_11 GIGIAGIGVF K PELIMKSLIP Site 167
M_brevicollis_3 GTGIAAMSVM R PELIMKSIIP Site 167
D_discoideum_3 SVGISNMGVM K PDLVIKAFIP Site 167
P_stipitis_16 GSTILGAGVK A PRITTKNLIS Site 167
C_albicans_16 GTSILGAGVK A PRITTKNLIS Site 167
C_albicans_11 GIGIAGIGTF K PELIMKSLIP Site 167
P_stipitis_11 GVGIAGIGTF K PELIMKSLIP Site 167
X_laevis_3 GTGIAAMSVM R PELIMKSIIP Site 167
C_glabrata_11 GIGIAGIGTF K PELIMKSLIP Site 167
E_caballus_16 GSSIIGGGVK A PRIKTKNLVS Site 167
C_glabrata_16 GSSMIGAGVR A PRITTKNLIS Site 167
V_polyspora_11 GIGIAGIGTF K PELLMKSLIP Site 167
V_polyspora_16 GSSIIGAGVR A PRITTKNLIS Site 167
C_hominis_16 GNSLVGAALR S PRIRSKNLIS Site 167
Species Residue at Site 210
in 'msaprobs'
muscle

The residue for every species at site 210 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

C_globosum_11 GIGIAGVGTF R PDLIMKCLIP Site 167
C_globosum_16 GSSILGGGVK A PRIRTKNLIS Site 167
O_mordax_16 GSSIIGGGVK A PRIKTKNLVS Site 167
D_rerio_16 GSSIIGGGVK A PRIKTKNLVS Site 167
B_bovis_3 GVGISSMGVM R PDLVMRSIIP Site 167
B_floridae_16 GSSIIGGGVK A PRIRTKNLIS Site 167
M_musculus_3 GTGIAAMSVM R PELIMKSIIP Site 167
A_fumigatus_16 GSSIVGGGVK A PRIRTKNLIS Site 167
C_familiaris_16 GSSIIGGGVK A PRIKTKNLVS Site 167
K_lactis_11 GIGISGIGTF K PELIMKSLIP Site 167
K_lactis_16 GSSIIGAGVR A PRITTKNLIS Site 167
B_taurus_16 GSSIIGGGVK A PRIKTKNLVS Site 167
S_sclerotiorum_16 GSSILGGGVK A PRIRTKNLIS Site 167
S_sclerotiorum_11 GIGIAGVGTF R PDLIMKSLIP Site 167
R_norvegicus_16 GSSIIGGGVK A PRIKTKNLVS Site 167

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