V-ATPase Ancestral Library

If you use these results in your work, please cite: Hanson-Smith and Johnson, PLoS Comp. Bio., 2016


Overview | Alignments | Sites | Trees | Ancestors | Mutations


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Select a Site:

Site 208 in Alignment 'msaprobs'


Similarity to Other Alignments

What percentage of the residues at this site are inferred to be a single site (i.e. homologous) in the alignments produced by other methods? A value of 100% indicates that the existence of site 208 is robust across multiple methods. Values less than 100% indicate that other alignment methods made different homology inferences.

Similarity of Site 208 in 'msaprobs'
to Sites in 'muscle'

What percentage of the residues at this site in msaprobs are inferred to be a single site (i.e. homologous) in the alignments produced by muscle? A value of 100% indicates that the existence of site 208 is reproduced using the muscle method. Values less than 100% indicate that muscle made different homology inferences for the residues at this site.


Species Residue at Site 208
in 'msaprobs'
muscle

The residue for every species at site 208 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

M_musculus_16 ITGSSIIGGG V KAPRIKTKNL Site 165
O_mordax_3 KSGTGIAAMS V MRPELIMKSI Site 165
D_rerio_3 KSGTDIAAMS V MRPELIMKSI Site 165
M_grisea_16 ITGSSILGGG V KAPRIRTKNL Site 165
M_grisea_11 KSGIGIAGVG T FRPDLIMKCL Site 165
A_niger_3 KAGVGVCGMA V LRPDLIVKNI Site 165
C_glabrata_3 KSGVGVCVTC V LRPDLLIKSI Site 165
A_terreus_11 KSGIGISGVG T FRPDLIMKSL Site 165
A_terreus_16 LTGSSIVAGG V KAPRIRTKNL Site 165
C_parvum_16 TTGNSLVGAA L RSPRIRSKNL Site 165
T_adhaerens_3 KSGTGIAAMS V MRPELIMKSI Site 165
T_castaneum_3 KSGTGIAAMS V MRPELIMKSI Site 165
X_tropicalis_3 KSGTGIAAMS V MRPELIMKSI Site 165
G_zeae_3 KSGVGIAAMG V LRPDLIVKNI Site 165
L_elongisporus_3 KSGVGICATS V TRPDLLVKNV Site 165
A_fumigatus_3 KAGVGVCGMA V LRPDLIVKNI Site 165
M_grisea_3 KSGVGIAAMG V LRPDLIVKNI Site 165
S_pombe_3 KAGVGISAMG V LRPDLIVKNT Site 165
C_albicans_3 KSGIGIAGIG T FKPELIMKSL Site 165
B_bovis_16 LCGTSIMGGS V NSPRITVKNL Site 165
C_muris_3 RAGVGISSMG V MRPELIMKSI Site 165
S_purpuratus_3 KSGTGVAAMS V MRPELIMKSI Site 165
C_immitis_16 ITGSSIIGGG V KAPRIRTKNL Site 165
M_mulatta_16 ITGSSIIGGG V KAPRIKTKNL Site 165
Y_lipolytica_3 KSGVGICATS V LRPDLLIKNT Site 165
Species Residue at Site 208
in 'msaprobs'
muscle

The residue for every species at site 208 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

B_fuckeliana_16 ITGSSILGGG V KAPRIRTKNL Site 165
C_immitis_11 KAGIGIANVG T FRPDLIMKSL Site 165
A_mellifera_16 TTGVSIIGGG V KAPRIKTKNL Site 165
A_gossypii_11 KSGIGISGIG T FRPELIMKSL Site 165
T_annulata_16 LCGPSIMGGS V KSPRITVKNL Site 165
N_vectensis_3 KSGTGIAAMS V MRPELIMKSI Site 165
S_Salar_16 ITGSSIIGGG V KAPRIKTKNL Site 165
L_elongisporus_16 ITGTSIIGAG V KAPRITTKNL Site 165
C_neoformans_16 VTGASILGGG V RAPRIRTKNL Site 165
C_neoformans_11 KAGIGIAGLG T FRPDLIMKSL Site 165
P_knowlesi_16 VCGTSIVGAS V KSPRIISKNL Site 165
A_terreus_3 KAGVGVCSMA V LRPDLIVKNI Site 165
A_pisum_3 KSGTGIAAMS V MRPELIMKSI Site 165
S_Salar_3 KSGTGIAAMS V MRPELIMKSI Site 165
P_marneffei_3 KAGVGVCGMA V LRPDLIVRNI Site 165
P_stipitis_3 KSGVGICATC V TRPDLLVKNV Site 165
A_fumigatus_11 KSGIGISGVG T FRPDLIMKSL Site 165
A_gossypii_3 KSGVSICATC V LRPDLLFKNI Site 165
C_hominis_3 KAGLAIASCG V MRPDLVMRSI Site 165
C_muris_16 TTGSSLVGAS V KSPRIRSKNL Site 165
X_laevis_16 ITGSSILGGG V KAPRIKTKNL Site 165
M_mulatta_3 KSRAGIAAMS V MRPELIMKSI Site 165
M_brevicollis_16 ITGASILGGG V MAPRIKTKNL Site 165
K_lactis_3 KSGVGICATC V LRPDLLFKNI Site 165
T_castaneum_16 TTGVSIIGGG V KAPRIKTKNL Site 165
Species Residue at Site 208
in 'msaprobs'
muscle

The residue for every species at site 208 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

C_intestinalis_16 TTGSSIMGAG V ITPRIYSKNL Site 165
E_caballus_3 KSGTGIAAMS V MRPELIMKSI Site 165
C_globosum_3 KSGVGIAAMG V LRPDLIVKNI Site 165
A_clavatus_3 KAGVGVCGMA V LRPDLIVKNI Site 165
N_crassa_11 KSGIGIAGVG T FRPDLIMKCL Site 165
N_crassa_16 ITGSSILGGG V KAPRIRTKNL Site 165
X_tropicalis_16 ITGSSILGGG V KAPRIKTKNL Site 165
P_anserina_11 KAGIGIAGVG T FRPDLIMKCL Site 165
P_vivax_16 ICGTSIVGAS V KSPRIISKNL Site 165
P_anserina_16 ITGSSILGGG V KAPRIRTKNL Site 165
H_sapiens_16 ITGSSIIGGG V KAPRIKTKNL Site 165
T_annulata_3 RSGVGISSMG V MRPDLVMKSI Site 165
C_intestinalis_3 KSGTGIAAMS V MRPELIMKSV Site 165
L_elongisporus_11 KSGIGIAGIG T FKPELIMKSL Site 165
A_gossypii_16 ITGASIIGAG V RAPRITTKNL Site 165
A_pisum_16 TTGVSIVGGG V KAPRIKTKNL Site 165
N_crassa_3 KSGVGIAAMG V LRPDLIVKNI Site 165
V_polyspora_3 KSGVGICATC V LRPDLLIKNV Site 165
S_cerevisiae_3 KSGVGICATC V LRPDLLFKNI Site 165
P_marneffei_16 LTGSSILGGG V KAPRIRTKNL Site 165
D_hansenii_3 KSGVGICATC V LRPDLLVKNI Site 165
S_pombe_11 LAGRGIAAVG A FRPEIVMKSL Site 165
T_guttata_3 KSGTGIAAMS V MRPELIMKSI Site 165
S_pombe_16 ICGTSILGGA V KAPRIKTKNL Site 165
B_fuckeliana_3 KSGVGICAMG V LRPDLIVKNI Site 165
Species Residue at Site 208
in 'msaprobs'
muscle

The residue for every species at site 208 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

T_adhaerens_16 ATGSSIVGGG V KAPRIKTKNL Site 165
S_cerevisiae_16 ITGSSMIGAG V RAPRITTKNL Site 165
R_norvegicus_3 KSGTGIAAMS V MRPELIMKSI Site 165
S_cerevisiae_11 KSGIGIAGIG T FKPELIMKSL Site 165
B_taurus_3 KSGTGIAAMS V MRPEMIMKSI Site 165
C_familiaris_3 KSGTGIAAMS V MRPELIMKSI Site 165
P_anserina_3 KSGVGIAAMG V LRPDLIVKNI Site 165
P_marneffei_11 KSGIGIAGVG Q YRPDLIMRSL Site 165
P_knowlesi_3 KSGVGVCSVG V MRPDLIMKSI Site 165
T_guttata_16 ITGSTIIAGG V KAPRIKTKNL Site 165
B_fuckeliana_11 KSGIGIAGVG T FRPDLIMKSL Site 165
C_cinerea_okayama_3 KSGVGISAMS V LRPDMMMKCS Site 165
P_falciparum_16 ICGTSIVGAS V KSPRIISKNL Site 165
N_vectensis_16 LTGASICGGG V KAPRIKAKNL Site 165
A_niger_11 KSGIGISGVG T FRPDLIMKSL Site 165
A_niger_16 LTGSSIVGGG V KAPRIRTKNL Site 165
C_parvum_3 KSGVGISSMA V MRPDLIMRSI Site 165
S_purpuratus_16 TTGTSIVGGG V KAPRIRTKNL Site 165
B_floridae_3 KSGMGIAAMS V MRPELIMKSI Site 165
Y_lipolytica_16 ITGSTIIGAG V KAPRITTKNL Site 165
A_mellifera_3 KSGTGIAAMS V MRPELIMKSI Site 165
A_clavatus_16 LTGSSIVGGG V RAPRIRTKNL Site 165
A_clavatus_11 KSGIGISGVG T FRPDLIMKSL Site 165
S_sclerotiorum_3 KSGVGICAMG V LRPDLIVKNI Site 165
P_falciparum_3 KSGVGVCSVG V MRPDLIMKSI Site 165
Species Residue at Site 208
in 'msaprobs'
muscle

The residue for every species at site 208 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

D_discoideum_16 VTASSLMGAA V KEPRIRSKNI Site 165
C_cinerea_okayama_11 KAGIGIAGLG Q FKPELIMKSL Site 165
D_hansenii_16 ITGSSIIGAG V KAPRITTKNL Site 165
D_hansenii_11 KSGIGISGIG T FKPELIMKSL Site 165
C_cinerea_okayama_16 ---------- - ----------  
P_vivax_3 KSGVGVCSVG V MRPDLIMKSI Site 165
C_immitis_3 KAGVGVCSTA V LRPDLIVKNI Site 165
G_zeae_11 KSGIGIAGVG T FRPDLIMKCL Site 165
C_neoformans_3 KSGVGISAMA V LRPDLMMKCA Site 165
H_sapiens_3 KSGTGIAAMS V MRPEQIMKSI Site 165
G_zeae_16 ITGSSILGGG V KAPRIRTKNL Site 165
Y_lipolytica_11 KSGIGIAGIG V FKPELIMKSL Site 165
M_brevicollis_3 KSGTGIAAMS V MRPELIMKSI Site 165
D_discoideum_3 KASVGISNMG V MKPDLVIKAF Site 165
P_stipitis_16 ITGSTILGAG V KAPRITTKNL Site 165
C_albicans_16 ITGTSILGAG V KAPRITTKNL Site 165
C_albicans_11 KSGIGIAGIG T FKPELIMKSL Site 165
P_stipitis_11 KSGVGIAGIG T FKPELIMKSL Site 165
X_laevis_3 KSGTGIAAMS V MRPELIMKSI Site 165
C_glabrata_11 KSGIGIAGIG T FKPELIMKSL Site 165
E_caballus_16 ITGSSIIGGG V KAPRIKTKNL Site 165
C_glabrata_16 ITGSSMIGAG V RAPRITTKNL Site 165
V_polyspora_11 KSGIGIAGIG T FKPELLMKSL Site 165
V_polyspora_16 ITGSSIIGAG V RAPRITTKNL Site 165
C_hominis_16 TTGNSLVGAA L RSPRIRSKNL Site 165
Species Residue at Site 208
in 'msaprobs'
muscle

The residue for every species at site 208 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

C_globosum_11 KSGIGIAGVG T FRPDLIMKCL Site 165
C_globosum_16 ITGSSILGGG V KAPRIRTKNL Site 165
O_mordax_16 ITGSSIIGGG V KAPRIKTKNL Site 165
D_rerio_16 ITGSSIIGGG V KAPRIKTKNL Site 165
B_bovis_3 RSGVGISSMG V MRPDLVMRSI Site 165
B_floridae_16 TTGSSIIGGG V KAPRIRTKNL Site 165
M_musculus_3 KSGTGIAAMS V MRPELIMKSI Site 165
A_fumigatus_16 LTGSSIVGGG V KAPRIRTKNL Site 165
C_familiaris_16 ITGSSIIGGG V KAPRIKTKNL Site 165
K_lactis_11 KSGIGISGIG T FKPELIMKSL Site 165
K_lactis_16 ITGSSIIGAG V RAPRITTKNL Site 165
B_taurus_16 ITGSSIIGGG V KAPRIKTKNL Site 165
S_sclerotiorum_16 ITGSSILGGG V KAPRIRTKNL Site 165
S_sclerotiorum_11 KSGIGIAGVG T FRPDLIMKSL Site 165
R_norvegicus_16 ITGSSIIGGG V KAPRIKTKNL Site 165

Generated by PhyloBot at 15:19, October 27th 2020
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