V-ATPase Ancestral Library

If you use these results in your work, please cite: Hanson-Smith and Johnson, PLoS Comp. Bio., 2016


Overview | Alignments | Sites | Trees | Ancestors | Mutations


Select an Alignment:

Select a Site:

Site 200 in Alignment 'msaprobs'


Similarity to Other Alignments

What percentage of the residues at this site are inferred to be a single site (i.e. homologous) in the alignments produced by other methods? A value of 100% indicates that the existence of site 200 is robust across multiple methods. Values less than 100% indicate that other alignment methods made different homology inferences.

Similarity of Site 200 in 'msaprobs'
to Sites in 'muscle'

What percentage of the residues at this site in msaprobs are inferred to be a single site (i.e. homologous) in the alignments produced by muscle? A value of 100% indicates that the existence of site 200 is reproduced using the muscle method. Values less than 100% indicate that muscle made different homology inferences for the residues at this site.


Species Residue at Site 200
in 'msaprobs'
muscle

The residue for every species at site 200 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

M_musculus_16 VGAAWGIYIT G SSIIGGGVKA Site 157
O_mordax_3 LGAAYGTAKS G TGIAAMSVMR Site 157
D_rerio_3 LGAAYGTAKS G TDIAAMSVMR Site 157
M_grisea_16 VGAAWGIFIT G SSILGGGVKA Site 157
M_grisea_11 AGAAFGTAKS G IGIAGVGTFR Site 157
A_niger_3 FGAAYGTAKA G VGVCGMAVLR Site 157
C_glabrata_3 LGAAYGTAKS G VGVCVTCVLR Site 157
A_terreus_11 MGAAYGTAKS G IGISGVGTFR Site 157
A_terreus_16 VGAGWGIFLT G SSIVAGGVKA Site 157
C_parvum_16 FGAGWGIFTT G NSLVGAALRS Site 157
T_adhaerens_3 LGAAYGTAKS G TGIAAMSVMR Site 157
T_castaneum_3 LGAAYGTAKS G TGIAAMSVMR Site 157
X_tropicalis_3 LGAAYGTAKS G TGIAAMSVMR Site 157
G_zeae_3 LGASYGTAKS G VGIAAMGVLR Site 157
L_elongisporus_3 FGASYGTAKS G VGICATSVTR Site 157
A_fumigatus_3 FGAAYGTAKA G VGVCGMAVLR Site 157
M_grisea_3 LGASYGTAKS G VGIAAMGVLR Site 157
S_pombe_3 FGAAYGTAKA G VGISAMGVLR Site 157
C_albicans_3 AGAAIGTAKS G IGIAGIGTFK Site 157
B_bovis_16 LGAGWGILLC G TSIMGGSVNS Site 157
C_muris_3 LGAAYGTARA G VGISSMGVMR Site 157
S_purpuratus_3 LGAAYGTAKS G TGVAAMSVMR Site 157
C_immitis_16 VGAAWGIFIT G SSIIGGGVKA Site 157
M_mulatta_16 VGAAWGIYIT G SSIIGGGVKA Site 157
Y_lipolytica_3 FGASYGTAKS G VGICATSVLR Site 157
Species Residue at Site 200
in 'msaprobs'
muscle

The residue for every species at site 200 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

B_fuckeliana_16 HKVCRGILIT G SSILGGGVKA Site 157
C_immitis_11 LGAAYGTAKA G IGIANVGTFR Site 157
A_mellifera_16 VGAALGIHTT G VSIIGGGVKA Site 157
A_gossypii_11 LGAAIGTAKS G IGISGIGTFR Site 157
T_annulata_16 FGAATGLMLC G PSIMGGSVKS Site 157
N_vectensis_3 LGAAYGTAKS G TGIAAMSVMR Site 157
S_Salar_16 VGAAWGIYIT G SSIIGGGVKA Site 157
L_elongisporus_16 VGAAWGIFIT G TSIIGAGVKA Site 157
C_neoformans_16 SGAAWGIFVT G ASILGGGVRA Site 157
C_neoformans_11 VGAAYGTSKA G IGIAGLGTFR Site 157
P_knowlesi_16 IGAAWGIFVC G TSIVGASVKS Site 157
A_terreus_3 FGAAYGTAKA G VGVCSMAVLR Site 157
A_pisum_3 LGAAYGTAKS G TGIAAMSVMR Site 157
S_Salar_3 LGAAYGTAKS G TGIAAMSVMR Site 157
P_marneffei_3 FGAAYGTAKA G VGVCGMAVLR Site 157
P_stipitis_3 FGASYGTAKS G VGICATCVTR Site 157
A_fumigatus_11 MGAAYGTAKS G IGISGVGTFR Site 157
A_gossypii_3 FGAAYGTAKS G VSICATCVLR Site 157
C_hominis_3 FGAAYGTAKA G LAIASCGVMR Site 157
C_muris_16 LGAGWGIFTT G SSLVGASVKS Site 157
X_laevis_16 VGAAWGIYIT G SSILGGGVKA Site 157
M_mulatta_3 PRAAYGTVKS R AGIAAMSVMR Site 157
M_brevicollis_16 VGAAWGIFIT G ASILGGGVMA Site 157
K_lactis_3 FGAAYGTAKS G VGICATCVLR Site 157
T_castaneum_16 VGAAAGIHTT G VSIIGGGVKA Site 157
Species Residue at Site 200
in 'msaprobs'
muscle

The residue for every species at site 200 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

C_intestinalis_16 VGAAWGIFTT G SSIMGAGVIT Site 157
E_caballus_3 LGAAYGTAKS G TGIAAMSVMR Site 157
C_globosum_3 LGASYGTAKS G VGIAAMGVLR Site 157
A_clavatus_3 FGAAYGTAKA G VGVCGMAVLR Site 157
N_crassa_11 AGAAYGTAKS G IGIAGVGTFR Site 157
N_crassa_16 VGAAWGIFIT G SSILGGGVKA Site 157
X_tropicalis_16 VGAAWGIYIT G SSILGGGVKA Site 157
P_anserina_11 MGAAYGTAKA G IGIAGVGTFR Site 157
P_vivax_16 IGAAWGIFIC G TSIVGASVKS Site 157
P_anserina_16 VGAAWGIFIT G SSILGGGVKA Site 157
H_sapiens_16 VGAAWGIYIT G SSIIGGGVKA Site 157
T_annulata_3 LGAAYGTARS G VGISSMGVMR Site 157
C_intestinalis_3 IGAAYGTAKS G TGIAAMSVMR Site 157
L_elongisporus_11 AGAAIGTAKS G IGIAGIGTFK Site 157
A_gossypii_16 VGAAWGIFIT G ASIIGAGVRA Site 157
A_pisum_16 VGAALGIHTT G VSIVGGGVKA Site 157
N_crassa_3 LGASYGTAKS G VGIAAMGVLR Site 157
V_polyspora_3 LGAAYGTAKS G VGICATCVLR Site 157
S_cerevisiae_3 LGAAYGTAKS G VGICATCVLR Site 157
P_marneffei_16 VGAAWGIFLT G SSILGGGVKA Site 157
D_hansenii_3 FGASYGTAKS G VGICATCVLR Site 157
S_pombe_11 LGAGYGTALA G RGIAAVGAFR Site 157
T_guttata_3 LGAAYGTAKS G TGIAAMSVMR Site 157
S_pombe_16 IGAAWGIFIC G TSILGGAVKA Site 157
B_fuckeliana_3 FGAAYGTAKS G VGICAMGVLR Site 157
Species Residue at Site 200
in 'msaprobs'
muscle

The residue for every species at site 200 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

T_adhaerens_16 VGAAWGIFAT G SSIVGGGVKA Site 157
S_cerevisiae_16 VGAAWGIFIT G SSMIGAGVRA Site 157
R_norvegicus_3 MGAAYGTAKS G TGIAAMSVMR Site 157
S_cerevisiae_11 LGAAIGTAKS G IGIAGIGTFK Site 157
B_taurus_3 LGAAYGTAKS G TGIAAMSVMR Site 157
C_familiaris_3 LGAAYGTAKS G TGIAAMSVMR Site 157
P_anserina_3 LGASYGTAKS G VGIAAMGVLR Site 157
P_marneffei_11 IGAAYGTAKS G IGIAGVGQYR Site 157
P_knowlesi_3 LGAAYGTAKS G VGVCSVGVMR Site 157
T_guttata_16 VGAAWGIYIT G STIIAGGVKA Site 157
B_fuckeliana_11 IGAAYGTAKS G IGIAGVGTFR Site 157
C_cinerea_okayama_3 IGASYGTAKS G VGISAMSVLR Site 157
P_falciparum_16 MGAAWGIFIC G TSIVGASVKS Site 157
N_vectensis_16 VGAAWGILLT G ASICGGGVKA Site 157
A_niger_11 MGAAYGTAKS G IGISGVGTFR Site 157
A_niger_16 VGAAWGIFLT G SSIVGGGVKA Site 157
C_parvum_3 LGAAYGIAKS G VGISSMAVMR Site 157
S_purpuratus_16 VGAAWGIFTT G TSIVGGGVKA Site 157
B_floridae_3 FGAAYGTAKS G MGIAAMSVMR Site 157
Y_lipolytica_16 IGAAWGIFIT G STIIGAGVKA Site 157
A_mellifera_3 LGAAYGTAKS G TGIAAMSVMR Site 157
A_clavatus_16 VGAGWGIFLT G SSIVGGGVRA Site 157
A_clavatus_11 LGAAYGTAKS G IGISGVGTFR Site 157
S_sclerotiorum_3 FGAAYGTAKS G VGICAMGVLR Site 157
P_falciparum_3 LGAAFGTAKS G VGVCSVGVMR Site 157
Species Residue at Site 200
in 'msaprobs'
muscle

The residue for every species at site 200 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

D_discoideum_16 VGSAWGIWVT A SSLMGAAVKE Site 157
C_cinerea_okayama_11 VGAAFGTSKA G IGIAGLGQFK Site 157
D_hansenii_16 VGAAWGIFIT G SSIIGAGVKA Site 157
D_hansenii_11 AGAAIGTAKS G IGISGIGTFK Site 157
C_cinerea_okayama_16 AGA------- - ----------  
P_vivax_3 LGAAYGTAKS G VGVCSVGVMR Site 157
C_immitis_3 FGAAYGTAKA G VGVCSTAVLR Site 157
G_zeae_11 IGAAYGTAKS G IGIAGVGTFR Site 157
C_neoformans_3 IGAAYGTAKS G VGISAMAVLR Site 157
H_sapiens_3 LGAAYGTAKS G TGIAAMSVMR Site 157
G_zeae_16 VGAAWGIFIT G SSILGGGVKA Site 157
Y_lipolytica_11 AGAAIGTAKS G IGIAGIGVFK Site 157
M_brevicollis_3 LGAAYGTAKS G TGIAAMSVMR Site 157
D_discoideum_3 MGAAYGTAKA S VGISNMGVMK Site 157
P_stipitis_16 VGAAWGIFIT G STILGAGVKA Site 157
C_albicans_16 VGAAWGIFIT G TSILGAGVKA Site 157
C_albicans_11 AGAAIGTAKS G IGIAGIGTFK Site 157
P_stipitis_11 AGAAIGTAKS G VGIAGIGTFK Site 157
X_laevis_3 LGAAYGTAKS G TGIAAMSVMR Site 157
C_glabrata_11 LGAAIGTAKS G IGIAGIGTFK Site 157
E_caballus_16 VGAAWGIYIT G SSIIGGGVKA Site 157
C_glabrata_16 VGAAWGIFIT G SSMIGAGVRA Site 157
V_polyspora_11 LGAAIGTAKS G IGIAGIGTFK Site 157
V_polyspora_16 IGAAWGIFIT G SSIIGAGVRA Site 157
C_hominis_16 FGAGWGIFTT G NSLVGAALRS Site 157
Species Residue at Site 200
in 'msaprobs'
muscle

The residue for every species at site 200 of the msaprobs alignment can be found in the muscle alignment, but with a possibly different site number.

C_globosum_11 AGAAYGTAKS G IGIAGVGTFR Site 157
C_globosum_16 VGAAWGIFIT G SSILGGGVKA Site 157
O_mordax_16 VGAAWGIYIT G SSIIGGGVKA Site 157
D_rerio_16 VGAAWGIYIT G SSIIGGGVKA Site 157
B_bovis_3 LGAAYGTARS G VGISSMGVMR Site 157
B_floridae_16 VGAAWGILTT G SSIIGGGVKA Site 157
M_musculus_3 MGAAYGTAKS G TGIAAMSVMR Site 157
A_fumigatus_16 VGAAWGIFLT G SSIVGGGVKA Site 157
C_familiaris_16 VGAAWGIYIT G SSIIGGGVKA Site 157
K_lactis_11 LGAAIGTAKS G IGISGIGTFK Site 157
K_lactis_16 VGAAWGIFIT G SSIIGAGVRA Site 157
B_taurus_16 VGAAWGIYIT G SSIIGGGVKA Site 157
S_sclerotiorum_16 VGAAWGILIT G SSILGGGVKA Site 157
S_sclerotiorum_11 IGAAYGTAKS G IGIAGVGTFR Site 157
R_norvegicus_16 VGAAWGIYIT G SSIIGGGVKA Site 157

Generated by PhyloBot at 17:04, October 30th 2020
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